Wall clock time and date at job start Tue Mar 31 2020 03:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46898 * 110.99953 * 2 1 4 4 C 1.53002 * 109.47015 * 293.95082 * 3 2 1 5 5 C 1.50692 * 109.47406 * 179.97438 * 4 3 2 6 6 O 1.21288 * 119.99879 * 0.02562 * 5 4 3 7 7 N 1.34779 * 120.00286 * 180.02562 * 5 4 3 8 8 C 1.46503 * 119.99920 * 0.02562 * 7 5 4 9 9 C 1.46505 * 120.00117 * 179.97438 * 7 5 4 10 10 C 1.50705 * 109.46692 * 90.00030 * 9 7 5 11 11 H 1.07996 * 120.00067 * 0.02562 * 10 9 7 12 12 C 1.37878 * 119.99846 * 179.97438 * 10 9 7 13 13 N 1.31513 * 119.99719 * 359.97438 * 12 10 9 14 14 Si 1.86792 * 119.99941 * 180.02562 * 12 10 9 15 15 H 1.48504 * 109.47525 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.47648 * 120.00152 * 14 12 10 17 17 H 1.48511 * 109.47076 * 240.00087 * 14 12 10 18 18 C 1.46896 * 111.00141 * 123.95308 * 2 1 3 19 19 C 1.53002 * 109.47243 * 66.04370 * 18 2 1 20 20 N 1.46506 * 109.47035 * 179.97438 * 19 18 2 21 21 C 1.34944 * 126.03372 * 125.00124 * 20 19 18 22 22 C 1.35317 * 107.74658 * 179.97438 * 21 20 19 23 23 C 1.39871 * 107.91935 * 0.02562 * 22 21 20 24 24 N 1.30845 * 108.20108 * 359.74200 * 23 22 21 25 25 H 1.08996 * 109.46988 * 296.04665 * 1 2 3 26 26 H 1.09000 * 109.47343 * 56.05204 * 1 2 3 27 27 H 1.09000 * 109.46850 * 176.05026 * 1 2 3 28 28 H 1.08994 * 109.47665 * 53.95228 * 3 2 1 29 29 H 1.08996 * 109.47097 * 173.95947 * 3 2 1 30 30 H 1.08996 * 109.47540 * 300.00561 * 4 3 2 31 31 H 1.09004 * 109.46914 * 60.00043 * 4 3 2 32 32 H 1.09006 * 109.46808 * 89.99880 * 8 7 5 33 33 H 1.08999 * 109.46929 * 209.99621 * 8 7 5 34 34 H 1.08993 * 109.46906 * 329.99861 * 8 7 5 35 35 H 1.08996 * 109.46955 * 209.99730 * 9 7 5 36 36 H 1.08995 * 109.46962 * 330.00342 * 9 7 5 37 37 H 0.97003 * 119.99783 * 179.97438 * 13 12 10 38 38 H 1.09004 * 109.47041 * 306.04581 * 18 2 1 39 39 H 1.09004 * 109.47535 * 186.04620 * 18 2 1 40 40 H 1.09004 * 109.46930 * 60.00143 * 19 18 2 41 41 H 1.09000 * 109.47312 * 300.00087 * 19 18 2 42 42 H 1.08001 * 126.12891 * 0.02562 * 21 20 19 43 43 H 1.08002 * 126.04160 * 179.97438 * 22 21 20 44 44 H 1.07995 * 125.90070 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6315 2.0574 -1.3183 5 6 2.1709 3.4644 -1.3181 6 8 2.7864 3.8778 -0.3583 7 7 1.9695 4.2636 -2.3846 8 6 1.2256 3.7644 -3.5438 9 6 2.4935 5.6317 -2.3842 10 6 3.8858 5.6365 -2.9610 11 1 4.3351 4.7129 -3.2948 12 6 4.5855 6.8201 -3.0634 13 7 4.0376 7.9449 -2.6582 14 14 6.3109 6.8261 -3.7789 15 1 6.6947 5.4424 -4.1576 16 1 6.3451 7.6965 -4.9817 17 1 7.2652 7.3443 -2.7658 18 6 1.9955 -0.7659 1.1376 19 6 1.6314 -2.2426 0.9704 20 7 2.1571 -3.0065 2.1046 21 6 1.4421 -3.8084 2.9213 22 6 2.2921 -4.3279 3.8370 23 6 3.5703 -3.8258 3.5712 24 7 3.4914 -3.0377 2.5297 25 1 -0.3633 0.4512 0.9233 26 1 -0.3634 0.5739 -0.8525 27 1 -0.3633 -1.0252 -0.0708 28 1 1.5611 1.9274 0.8308 29 1 3.0797 1.3444 0.1081 30 1 2.0657 1.5015 -2.1492 31 1 0.5472 2.0844 -1.4266 32 1 0.1645 3.9771 -3.4136 33 1 1.5867 4.2569 -4.4467 34 1 1.3721 2.6881 -3.6336 35 1 1.8476 6.2683 -2.9888 36 1 2.5223 6.0094 -1.3622 37 1 4.5300 8.7776 -2.7299 38 1 1.5611 -0.3872 2.0628 39 1 3.0798 -0.6611 1.1756 40 1 2.0658 -2.6214 0.0451 41 1 0.5472 -2.3475 0.9324 42 1 0.3815 -4.0016 2.8552 43 1 2.0299 -5.0090 4.6330 44 1 4.4680 -4.0527 4.1271 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181567745.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:42:23 Heat of formation + Delta-G solvation = 28.016029 kcal Electronic energy + Delta-G solvation = -22962.765771 eV Core-core repulsion = 19530.380038 eV Total energy + Delta-G solvation = -3432.385733 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.00149 -40.76355 -38.83787 -36.60824 -34.87763 -34.62842 -32.31423 -31.01896 -29.83865 -29.07441 -27.63188 -27.13051 -25.30847 -23.79418 -22.14982 -21.88317 -21.31385 -19.92632 -18.72257 -18.36797 -17.81508 -17.15408 -17.06377 -16.55546 -16.31635 -15.85487 -15.73527 -15.43478 -14.89169 -14.67763 -14.53081 -14.14631 -13.93805 -13.79702 -13.58866 -13.46980 -13.42827 -13.23371 -13.17014 -12.90354 -12.76024 -12.57536 -12.36327 -12.23003 -12.09716 -11.91048 -11.68618 -11.48424 -10.67015 -10.62873 -10.39221 -9.53877 -9.46103 -9.42399 -8.24614 -6.39430 1.01570 1.34510 1.37210 1.49061 1.58618 1.82866 1.98394 2.28053 2.40842 2.92747 3.04837 3.55515 3.79735 3.90396 3.93442 4.05817 4.10390 4.15287 4.27021 4.39046 4.45136 4.52905 4.59832 4.65172 4.72819 4.78096 4.86887 4.90545 4.93217 4.95059 4.98600 5.05610 5.09592 5.17795 5.21463 5.54906 5.73791 5.83045 5.83173 5.97895 6.04381 6.19850 6.68158 6.78553 6.80432 7.26462 7.47542 8.82619 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.023400 B = 0.002527 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.285366 B =11077.131746 C =11855.552913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 N -0.535 5.535 3 C 0.081 3.919 4 C -0.113 4.113 5 C 0.492 3.508 6 O -0.604 6.604 7 N -0.611 5.611 8 C 0.078 3.922 9 C 0.257 3.743 10 C -0.541 4.541 11 H 0.052 0.948 12 C 0.005 3.995 13 N -0.929 5.929 14 Si 0.969 3.031 15 H -0.267 1.267 16 H -0.267 1.267 17 H -0.282 1.282 18 C 0.053 3.947 19 C 0.143 3.857 20 N -0.382 5.382 21 C 0.056 3.944 22 C -0.288 4.288 23 C 0.031 3.969 24 N -0.346 5.346 25 H 0.025 0.975 26 H 0.085 0.915 27 H 0.097 0.903 28 H 0.026 0.974 29 H 0.056 0.944 30 H 0.118 0.882 31 H 0.122 0.878 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.097 0.903 35 H 0.025 0.975 36 H -0.004 1.004 37 H 0.267 0.733 38 H 0.031 0.969 39 H 0.061 0.939 40 H 0.093 0.907 41 H 0.131 0.869 42 H 0.211 0.789 43 H 0.169 0.831 44 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.407 -25.969 5.717 29.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 N -0.259 5.259 3 C -0.048 4.048 4 C -0.153 4.153 5 C 0.281 3.719 6 O -0.487 6.487 7 N -0.343 5.343 8 C -0.064 4.064 9 C 0.136 3.864 10 C -0.580 4.580 11 H 0.071 0.929 12 C -0.194 4.194 13 N -0.569 5.569 14 Si 0.793 3.207 15 H -0.191 1.191 16 H -0.192 1.192 17 H -0.208 1.208 18 C -0.076 4.076 19 C 0.022 3.978 20 N -0.165 5.165 21 C -0.090 4.090 22 C -0.317 4.317 23 C -0.154 4.154 24 N -0.168 5.168 25 H 0.044 0.956 26 H 0.104 0.896 27 H 0.116 0.884 28 H 0.044 0.956 29 H 0.074 0.926 30 H 0.136 0.864 31 H 0.140 0.860 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.115 0.885 35 H 0.043 0.957 36 H 0.014 0.986 37 H 0.076 0.924 38 H 0.049 0.951 39 H 0.079 0.921 40 H 0.111 0.889 41 H 0.149 0.851 42 H 0.228 0.772 43 H 0.186 0.814 44 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -11.353 -24.942 4.829 27.827 hybrid contribution 0.548 0.738 1.212 1.521 sum -10.805 -24.204 6.041 27.186 Atomic orbital electron populations 1.22741 0.85446 1.04134 1.01613 1.61900 1.09649 1.12471 1.41891 1.21603 0.99629 0.87634 0.95901 1.21551 1.03886 0.89685 1.00171 1.21425 0.79624 0.88920 0.81895 1.90641 1.44055 1.77189 1.36774 1.48213 1.54059 1.14411 1.17569 1.21963 0.95925 1.01038 0.87498 1.18756 0.93390 0.78815 0.95456 1.21734 1.01258 0.93745 1.41263 0.92939 1.25888 1.02712 0.94963 0.95811 1.70058 1.39549 0.99154 1.48116 0.85352 0.78699 0.78460 0.78201 1.19148 1.19192 1.20825 1.22172 1.00415 0.93333 0.91720 1.21755 1.00778 0.89010 0.86299 1.48890 1.05448 1.36566 1.25570 1.23272 1.00406 0.93606 0.91752 1.21898 0.92481 1.11057 1.06312 1.24407 1.00439 0.95578 0.95003 1.77362 0.97827 1.24569 1.17085 0.95628 0.89603 0.88438 0.95593 0.92574 0.86441 0.86027 0.90888 0.91728 0.88487 0.95734 0.98634 0.92384 0.95086 0.92055 0.88892 0.85129 0.77242 0.81395 0.78444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.13 127.69 1.17 1.27 16 2 N -0.53 -10.79 4.76 -922.47 -4.39 -15.18 16 3 C 0.08 2.28 4.25 86.30 0.37 2.65 16 4 C -0.11 -3.06 4.18 29.85 0.12 -2.93 16 5 C 0.49 20.62 7.67 87.65 0.67 21.29 16 6 O -0.60 -32.21 15.56 -3.06 -0.05 -32.25 16 7 N -0.61 -26.13 2.86 -851.11 -2.43 -28.56 16 8 C 0.08 2.24 10.24 127.77 1.31 3.55 16 9 C 0.26 14.19 5.16 85.63 0.44 14.63 16 10 C -0.54 -31.91 9.39 25.60 0.24 -31.67 16 11 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 12 C 0.01 0.30 5.46 84.66 0.46 0.76 16 13 N -0.93 -57.16 13.29 21.45 0.28 -56.88 16 14 Si 0.97 45.85 29.54 68.60 2.03 47.88 16 15 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 16 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 17 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 18 C 0.05 1.09 5.15 86.30 0.44 1.53 16 19 C 0.14 2.11 6.43 86.38 0.56 2.66 16 20 N -0.38 -7.16 3.68 -348.04 -1.28 -8.44 16 21 C 0.06 0.74 11.45 83.54 0.96 1.70 16 22 C -0.29 -4.21 10.80 21.99 0.24 -3.97 16 23 C 0.03 0.59 12.03 85.24 1.03 1.61 16 24 N -0.35 -8.50 12.42 -57.02 -0.71 -9.21 16 25 H 0.03 0.37 8.14 -2.39 -0.02 0.35 16 26 H 0.09 1.02 6.30 -2.39 -0.02 1.00 16 27 H 0.10 0.73 6.47 -2.39 -0.02 0.72 16 28 H 0.03 0.81 8.08 -2.39 -0.02 0.79 16 29 H 0.06 1.89 7.89 -2.39 -0.02 1.87 16 30 H 0.12 2.76 7.40 -2.39 -0.02 2.74 16 31 H 0.12 2.43 6.44 -2.38 -0.02 2.42 16 32 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 33 H 0.06 2.00 8.07 -2.39 -0.02 1.98 16 34 H 0.10 2.07 6.44 -2.39 -0.02 2.05 16 35 H 0.02 1.36 8.07 -2.39 -0.02 1.34 16 36 H 0.00 -0.29 7.42 -2.39 -0.02 -0.30 16 37 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 38 H 0.03 0.69 8.12 -2.38 -0.02 0.67 16 39 H 0.06 1.64 7.93 -2.39 -0.02 1.62 16 40 H 0.09 1.43 8.14 -2.38 -0.02 1.41 16 41 H 0.13 0.96 6.48 -2.39 -0.02 0.94 16 42 H 0.21 0.91 8.06 -2.91 -0.02 0.89 16 43 H 0.17 1.54 8.06 -2.91 -0.02 1.52 16 44 H 0.20 2.64 8.06 -2.91 -0.02 2.61 16 Total: -1.00 -83.37 364.60 2.42 -80.95 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: 0.97 Total: 8.61 kcal Atomic # 6 Polarization: 5.08 SS G_CDS: 8.00 Total: 13.08 kcal Atomic # 7 Polarization: -109.74 SS G_CDS: -8.53 Total: -118.26 kcal Atomic # 8 Polarization: -32.21 SS G_CDS: -0.05 Total: -32.25 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.88 kcal Total: -83.37 2.42 -80.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181567745.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.965 kcal (2) G-P(sol) polarization free energy of solvation -83.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds