Wall clock time and date at job start Tue Mar 31 2020 03:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.47066 * 2 1 4 4 C 1.53002 * 109.47399 * 240.00016 * 2 1 3 5 5 N 1.46500 * 109.47148 * 175.00020 * 4 2 1 6 6 C 1.34946 * 126.03644 * 124.95038 * 5 4 2 7 7 C 1.35316 * 107.74870 * 180.02562 * 6 5 4 8 8 C 1.39875 * 107.91722 * 0.02562 * 7 6 5 9 9 N 1.30829 * 108.20298 * 0.02562 * 8 7 6 10 10 N 1.46898 * 109.46987 * 119.99781 * 2 1 3 11 11 C 1.46900 * 111.00381 * 275.00047 * 10 2 1 12 12 C 1.52997 * 109.47128 * 179.97438 * 11 10 2 13 13 C 1.50706 * 109.47223 * 180.02562 * 12 11 10 14 14 O 1.21287 * 119.99362 * 0.02562 * 13 12 11 15 15 N 1.34766 * 120.00199 * 179.97438 * 13 12 11 16 16 C 1.46499 * 120.00117 * 0.02562 * 15 13 12 17 17 C 1.46496 * 120.00083 * 180.02562 * 15 13 12 18 18 C 1.50699 * 109.47345 * 89.99913 * 17 15 13 19 19 H 1.07998 * 119.99794 * 0.02562 * 18 17 15 20 20 C 1.37878 * 120.00224 * 179.97438 * 18 17 15 21 21 N 1.31516 * 119.99969 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00019 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47254 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47267 * 120.00295 * 22 20 18 25 25 H 1.48506 * 109.47019 * 240.00193 * 22 20 18 26 26 H 1.09003 * 109.46828 * 300.00440 * 1 2 3 27 27 H 1.09008 * 109.46606 * 59.99796 * 1 2 3 28 28 H 1.08994 * 109.46826 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46833 * 55.00012 * 4 2 1 30 30 H 1.08993 * 109.46978 * 295.00488 * 4 2 1 31 31 H 1.07999 * 126.12479 * 0.04451 * 6 5 4 32 32 H 1.07999 * 126.03957 * 180.26092 * 7 6 5 33 33 H 1.08004 * 125.89587 * 180.02562 * 8 7 6 34 34 H 1.00904 * 111.00101 * 38.95899 * 10 2 1 35 35 H 1.08995 * 109.47035 * 300.00194 * 11 10 2 36 36 H 1.09004 * 109.46920 * 60.00172 * 11 10 2 37 37 H 1.08995 * 109.47454 * 300.00101 * 12 11 10 38 38 H 1.09003 * 109.47441 * 60.00530 * 12 11 10 39 39 H 1.08998 * 109.47702 * 89.99696 * 16 15 13 40 40 H 1.09009 * 109.47043 * 210.00089 * 16 15 13 41 41 H 1.08998 * 109.46884 * 329.99594 * 16 15 13 42 42 H 1.09006 * 109.47302 * 210.00367 * 17 15 13 43 43 H 1.09002 * 109.47171 * 330.00246 * 17 15 13 44 44 H 0.97004 * 119.99985 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 3.5001 -0.6178 -1.3109 6 6 4.3656 -1.6486 -1.4083 7 6 5.6172 -1.1351 -1.4369 8 6 5.5130 0.2573 -1.3535 9 7 4.2445 0.5684 -1.2770 10 7 2.0196 -0.6924 1.1995 11 6 2.0824 0.2226 2.3469 12 6 2.5949 -0.5332 3.5745 13 6 2.6588 0.4054 4.7519 14 8 2.3265 1.5646 4.6219 15 7 3.0840 -0.0436 5.9493 16 6 3.4848 -1.4439 6.1063 17 6 3.1456 0.8687 7.0939 18 6 1.8319 0.8383 7.8317 19 1 1.0314 0.2026 7.4831 20 6 1.6523 1.6211 8.9524 21 7 2.6273 2.3948 9.3772 22 14 0.0242 1.5829 9.8673 23 1 -0.9010 0.6377 9.1921 24 1 0.2524 1.1375 11.2655 25 1 -0.5730 2.9425 9.8722 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 1.6055 -0.2617 -2.1369 30 1 1.7517 -1.7714 -1.2056 31 1 4.1058 -2.6958 -1.4554 32 1 6.5342 -1.7002 -1.5146 33 1 6.3374 0.9550 -1.3524 34 1 1.4495 -1.4979 1.4100 35 1 2.7588 1.0462 2.1183 36 1 1.0870 0.6163 2.5526 37 1 1.9183 -1.3565 3.8030 38 1 3.5903 -0.9272 3.3692 39 1 4.5496 -1.5430 5.8955 40 1 3.2852 -1.7665 7.1283 41 1 2.9177 -2.0641 5.4122 42 1 3.9463 0.5568 7.7645 43 1 3.3408 1.8815 6.7413 44 1 2.5008 2.9459 10.1654 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270665058.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:36:51 Heat of formation + Delta-G solvation = 15.401703 kcal Electronic energy + Delta-G solvation = -23400.809716 eV Core-core repulsion = 19967.876985 eV Total energy + Delta-G solvation = -3432.932731 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.83387 -40.72514 -38.49015 -36.63169 -34.87314 -34.51048 -32.48365 -30.80131 -30.33341 -29.02096 -27.30215 -27.15051 -25.32656 -23.31033 -22.66531 -21.73441 -21.16111 -19.90794 -18.73142 -18.14231 -17.93301 -17.13402 -16.90785 -16.44707 -16.25179 -15.94845 -15.61027 -15.20267 -14.67207 -14.58372 -14.31617 -14.27320 -13.86427 -13.61781 -13.50367 -13.48935 -13.40156 -13.23255 -12.99657 -12.83514 -12.79874 -12.60644 -12.42137 -12.23611 -12.19297 -11.99938 -11.69841 -11.35882 -10.67914 -10.64875 -10.19522 -9.53170 -9.43987 -9.25475 -8.25028 -6.40601 1.19781 1.34341 1.36946 1.48844 1.81449 1.84799 2.11323 2.26723 2.40860 3.04052 3.09497 3.62877 3.80746 4.00497 4.00721 4.08898 4.21248 4.23067 4.28348 4.38488 4.50556 4.55623 4.61522 4.70979 4.72402 4.80789 4.89505 4.93623 4.98026 5.00654 5.03839 5.08344 5.20330 5.21320 5.29548 5.53617 5.81736 5.84510 5.91492 6.03033 6.35429 6.50119 6.66934 6.76793 6.95838 7.25340 7.45916 8.82493 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.023052 B = 0.002945 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.365673 B = 9506.318014 C =10065.469979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.072 3.928 3 H 0.056 0.944 4 C 0.144 3.856 5 N -0.359 5.359 6 C 0.065 3.935 7 C -0.296 4.296 8 C 0.022 3.978 9 N -0.342 5.342 10 N -0.673 5.673 11 C 0.094 3.906 12 C -0.113 4.113 13 C 0.492 3.508 14 O -0.604 6.604 15 N -0.611 5.611 16 C 0.079 3.921 17 C 0.257 3.743 18 C -0.543 4.543 19 H 0.055 0.945 20 C 0.004 3.996 21 N -0.930 5.930 22 Si 0.971 3.029 23 H -0.265 1.265 24 H -0.267 1.267 25 H -0.282 1.282 26 H 0.043 0.957 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.096 0.904 30 H 0.130 0.870 31 H 0.206 0.794 32 H 0.160 0.840 33 H 0.188 0.812 34 H 0.353 0.647 35 H 0.042 0.958 36 H 0.021 0.979 37 H 0.119 0.881 38 H 0.113 0.887 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.098 0.902 42 H 0.023 0.977 43 H -0.006 1.006 44 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.351 -15.961 -22.997 27.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.038 4.038 3 H 0.074 0.926 4 C 0.023 3.977 5 N -0.140 5.140 6 C -0.082 4.082 7 C -0.325 4.325 8 C -0.162 4.162 9 N -0.165 5.165 10 N -0.305 5.305 11 C -0.036 4.036 12 C -0.153 4.153 13 C 0.281 3.719 14 O -0.486 6.486 15 N -0.342 5.342 16 C -0.063 4.063 17 C 0.136 3.864 18 C -0.581 4.581 19 H 0.073 0.927 20 C -0.194 4.194 21 N -0.570 5.570 22 Si 0.795 3.205 23 H -0.189 1.189 24 H -0.192 1.192 25 H -0.208 1.208 26 H 0.062 0.938 27 H 0.095 0.905 28 H 0.105 0.895 29 H 0.114 0.886 30 H 0.148 0.852 31 H 0.222 0.778 32 H 0.177 0.823 33 H 0.205 0.795 34 H 0.173 0.827 35 H 0.061 0.939 36 H 0.040 0.960 37 H 0.137 0.863 38 H 0.131 0.869 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.116 0.884 42 H 0.041 0.959 43 H 0.012 0.988 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.795 -14.258 -22.975 27.052 hybrid contribution -0.704 0.360 1.193 1.431 sum -1.498 -13.898 -21.782 25.882 Atomic orbital electron populations 1.22378 0.94285 1.03965 1.02775 1.21795 0.94162 0.97738 0.90150 0.92557 1.21975 0.73907 1.04192 0.97620 1.48677 1.07050 1.03483 1.54828 1.23065 0.89747 0.95661 0.99729 1.21763 0.98775 0.93971 1.18007 1.24191 0.94559 0.97324 1.00166 1.77246 1.05379 1.08163 1.25728 1.60440 1.57648 1.09583 1.02809 1.21310 0.98585 0.94408 0.89329 1.21486 1.05502 0.97832 0.90469 1.21422 0.76562 0.88825 0.85084 1.90638 1.51063 1.21730 1.85189 1.48202 1.63697 1.12537 1.09769 1.21946 1.00784 0.79932 1.03659 1.18754 0.96254 0.88387 0.83018 1.21731 0.99901 1.25480 1.11002 0.92722 1.25927 1.00931 0.94428 0.98151 1.70070 1.34200 1.27348 1.25353 0.85313 0.78729 0.77986 0.78436 1.18915 1.19242 1.20813 0.93764 0.90513 0.89511 0.88598 0.85215 0.77761 0.82275 0.79544 0.82689 0.93947 0.96040 0.86338 0.86882 0.91355 0.91522 0.88399 0.95907 0.98836 0.92363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.38 9.16 71.98 0.66 -1.73 16 2 C 0.07 1.30 2.70 44.92 0.12 1.42 16 3 H 0.06 1.47 7.71 -2.38 -0.02 1.45 16 4 C 0.14 1.90 6.14 86.38 0.53 2.43 16 5 N -0.36 -7.06 3.60 -348.07 -1.25 -8.31 16 6 C 0.07 1.03 11.45 83.54 0.96 1.98 16 7 C -0.30 -5.42 10.80 21.99 0.24 -5.19 16 8 C 0.02 0.51 12.03 85.24 1.03 1.54 16 9 N -0.34 -9.15 12.34 -57.02 -0.70 -9.86 16 10 N -0.67 -13.19 6.17 -491.57 -3.04 -16.23 16 11 C 0.09 2.71 4.77 86.30 0.41 3.12 16 12 C -0.11 -3.17 4.51 29.85 0.13 -3.04 16 13 C 0.49 21.19 7.67 87.66 0.67 21.86 16 14 O -0.60 -32.91 15.56 -3.05 -0.05 -32.95 16 15 N -0.61 -26.72 2.86 -851.13 -2.43 -29.15 16 16 C 0.08 2.36 10.24 127.77 1.31 3.66 16 17 C 0.26 14.42 5.16 85.63 0.44 14.86 16 18 C -0.54 -32.01 9.39 25.60 0.24 -31.77 16 19 H 0.05 3.17 7.81 -2.91 -0.02 3.15 16 20 C 0.00 0.26 5.46 84.65 0.46 0.72 16 21 N -0.93 -57.51 13.29 21.45 0.28 -57.22 16 22 Si 0.97 45.47 29.54 68.60 2.03 47.50 16 23 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 24 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 25 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 26 H 0.04 0.82 7.45 -2.39 -0.02 0.80 16 27 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 28 H 0.09 0.75 8.13 -2.39 -0.02 0.73 16 29 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.13 0.79 8.07 -2.39 -0.02 0.77 16 31 H 0.21 1.46 8.06 -2.91 -0.02 1.43 16 32 H 0.16 2.18 8.06 -2.91 -0.02 2.15 16 33 H 0.19 3.45 8.06 -2.91 -0.02 3.43 16 34 H 0.35 4.98 8.47 -89.69 -0.76 4.22 16 35 H 0.04 1.54 8.01 -2.39 -0.02 1.52 16 36 H 0.02 0.69 7.39 -2.39 -0.02 0.67 16 37 H 0.12 2.55 7.40 -2.39 -0.02 2.54 16 38 H 0.11 2.78 8.11 -2.39 -0.02 2.77 16 39 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.07 2.09 8.07 -2.38 -0.02 2.07 16 41 H 0.10 2.13 6.44 -2.39 -0.02 2.11 16 42 H 0.02 1.29 8.07 -2.38 -0.02 1.27 16 43 H -0.01 -0.42 7.42 -2.39 -0.02 -0.44 16 44 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -84.41 369.64 2.26 -82.15 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: 0.22 Total: 14.20 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: 7.20 Total: 9.88 kcal Atomic # 7 Polarization: -113.64 SS G_CDS: -7.14 Total: -120.78 kcal Atomic # 8 Polarization: -32.91 SS G_CDS: -0.05 Total: -32.95 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -84.41 2.26 -82.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270665058.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.555 kcal (2) G-P(sol) polarization free energy of solvation -84.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds