Wall clock time and date at job start Tue Mar 31 2020 03:35:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47161 * 2 1 4 4 N 1.46901 * 109.47269 * 240.00137 * 2 1 3 5 5 C 1.46905 * 110.99870 * 84.99904 * 4 2 1 6 6 H 1.09003 * 109.47224 * 325.00460 * 5 4 2 7 7 C 1.53002 * 109.47102 * 85.00132 * 5 4 2 8 8 C 1.50702 * 109.47206 * 205.00135 * 5 4 2 9 9 C 1.39877 * 126.03807 * 320.02657 * 8 5 4 10 10 N 1.30835 * 108.19871 * 179.97438 * 9 8 5 11 11 N 1.40084 * 108.20678 * 359.97438 * 10 9 8 12 12 C 1.46501 * 126.03456 * 180.02562 * 11 10 9 13 13 C 1.34948 * 107.92592 * 359.75486 * 11 10 9 14 14 C 1.50692 * 109.47298 * 120.00156 * 2 1 3 15 15 O 1.21284 * 120.00161 * 119.99881 * 14 2 1 16 16 N 1.34781 * 120.00152 * 300.00012 * 14 2 1 17 17 C 1.46497 * 119.99806 * 0.02562 * 16 14 2 18 18 C 1.46499 * 119.99956 * 179.97438 * 16 14 2 19 19 C 1.50707 * 109.46802 * 90.00450 * 18 16 14 20 20 H 1.07997 * 119.99883 * 359.97438 * 19 18 16 21 21 C 1.37871 * 119.99785 * 179.97438 * 19 18 16 22 22 N 1.31522 * 120.00496 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99943 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47108 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47198 * 120.00082 * 23 21 19 26 26 H 1.48504 * 109.47377 * 240.00053 * 23 21 19 27 27 H 1.09004 * 109.47587 * 59.99932 * 1 2 3 28 28 H 1.09000 * 109.47161 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47343 * 299.99942 * 1 2 3 30 30 H 1.00901 * 111.00067 * 208.95080 * 4 2 1 31 31 H 1.08999 * 109.47105 * 180.02562 * 7 5 4 32 32 H 1.08996 * 109.46950 * 299.99914 * 7 5 4 33 33 H 1.09000 * 109.46959 * 59.99562 * 7 5 4 34 34 H 1.07997 * 125.89676 * 359.97438 * 9 8 5 35 35 H 1.09001 * 109.47043 * 89.97826 * 12 11 10 36 36 H 1.08999 * 109.46809 * 209.97281 * 12 11 10 37 37 H 1.08997 * 109.47152 * 329.97280 * 12 11 10 38 38 H 1.08005 * 126.12557 * 180.23692 * 13 11 10 39 39 H 1.09000 * 109.47254 * 89.99799 * 17 16 14 40 40 H 1.08997 * 109.46806 * 209.99903 * 17 16 14 41 41 H 1.09004 * 109.47134 * 329.99606 * 17 16 14 42 42 H 1.09003 * 109.47393 * 209.99977 * 18 16 14 43 43 H 1.08991 * 109.47773 * 330.00436 * 18 16 14 44 44 H 0.96994 * 120.00478 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.0824 0.2227 -2.3469 6 1 1.2576 0.9331 -2.2907 7 6 3.4111 0.9810 -2.3224 8 6 1.9786 -0.5675 -3.6260 9 6 2.5846 -1.8018 -3.8822 10 7 2.2635 -2.1706 -5.0957 11 7 1.4413 -1.1814 -5.6507 12 6 0.8576 -1.1998 -6.9943 13 6 1.2769 -0.2115 -4.7268 14 6 2.0323 -0.7104 1.2304 15 8 2.7296 -1.6965 1.1191 16 7 1.7067 -0.2500 2.4546 17 6 0.8640 0.9408 2.5890 18 6 2.1946 -0.9410 3.6506 19 6 3.5224 -0.3579 4.0611 20 1 3.9591 0.4465 3.4880 21 6 4.1794 -0.8515 5.1681 22 7 3.6472 -1.8308 5.8664 23 14 5.8254 -0.1293 5.6764 24 1 6.2032 0.9538 4.7333 25 1 5.7196 0.4255 7.0498 26 1 6.8617 -1.1926 5.6506 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 2.9173 -1.1204 -1.0288 31 1 3.4574 1.6604 -3.1735 32 1 3.4861 1.5525 -1.3973 33 1 4.2359 0.2707 -2.3785 34 1 3.2096 -2.3548 -3.1967 35 1 -0.1163 -1.6882 -6.9607 36 1 0.7391 -0.1773 -7.3528 37 1 1.5158 -1.7474 -7.6688 38 1 0.6927 0.6890 -4.8461 39 1 -0.1838 0.6424 2.6225 40 1 1.1218 1.4663 3.5085 41 1 1.0271 1.5996 1.7360 42 1 1.4766 -0.8155 4.4611 43 1 2.3155 -2.0022 3.4334 44 1 4.1096 -2.1783 6.6450 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273371802.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:35:01 Heat of formation + Delta-G solvation = 28.406600 kcal Electronic energy + Delta-G solvation = -23858.602455 eV Core-core repulsion = 20426.233658 eV Total energy + Delta-G solvation = -3432.368796 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.07615 -40.93017 -37.83183 -36.60168 -34.90778 -34.15150 -33.05218 -30.68142 -29.68585 -28.66472 -27.53834 -27.35164 -25.70080 -24.13487 -22.79178 -21.81837 -20.71697 -19.99289 -18.70186 -18.22252 -17.46130 -17.20365 -16.63659 -16.37311 -16.25282 -15.46538 -15.30257 -15.12204 -15.02446 -14.29830 -14.21323 -14.08569 -13.86922 -13.60977 -13.51490 -13.43838 -13.33058 -13.15327 -13.03025 -12.81962 -12.66067 -12.57569 -12.46931 -12.25155 -12.18773 -12.05708 -11.66018 -11.31958 -10.64990 -10.46809 -10.27280 -9.43652 -9.36785 -9.13166 -8.22091 -6.37086 1.04392 1.36138 1.38769 1.50332 1.79161 1.85455 1.90706 2.29999 2.45026 3.07357 3.29775 3.68465 3.77071 4.09766 4.14834 4.23641 4.33666 4.38907 4.42863 4.45660 4.49206 4.51994 4.68630 4.73810 4.77986 4.86204 4.90779 4.94480 5.00524 5.05782 5.11206 5.20681 5.25042 5.33735 5.41987 5.56853 5.74999 5.84379 6.06306 6.14103 6.28274 6.40876 6.71105 6.81797 6.83165 7.28647 7.49374 8.85161 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.025805 B = 0.003152 C = 0.003025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.800277 B = 8880.670819 C = 9252.493009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.082 3.918 3 H 0.088 0.912 4 N -0.677 5.677 5 C 0.168 3.832 6 H 0.106 0.894 7 C -0.173 4.173 8 C -0.230 4.230 9 C 0.050 3.950 10 N -0.344 5.344 11 N -0.383 5.383 12 C 0.095 3.905 13 C 0.067 3.933 14 C 0.493 3.507 15 O -0.592 6.592 16 N -0.607 5.607 17 C 0.075 3.925 18 C 0.259 3.741 19 C -0.539 4.539 20 H 0.053 0.947 21 C 0.006 3.994 22 N -0.929 5.929 23 Si 0.968 3.032 24 H -0.266 1.266 25 H -0.269 1.269 26 H -0.283 1.283 27 H 0.090 0.910 28 H 0.041 0.959 29 H 0.086 0.914 30 H 0.342 0.658 31 H 0.078 0.922 32 H 0.052 0.948 33 H 0.041 0.959 34 H 0.168 0.832 35 H 0.082 0.918 36 H 0.119 0.881 37 H 0.084 0.916 38 H 0.214 0.786 39 H 0.076 0.924 40 H 0.065 0.935 41 H 0.096 0.904 42 H 0.024 0.976 43 H -0.005 1.005 44 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.680 11.922 -22.921 27.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.031 4.031 3 H 0.106 0.894 4 N -0.310 5.310 5 C 0.058 3.942 6 H 0.124 0.876 7 C -0.232 4.232 8 C -0.242 4.242 9 C -0.135 4.135 10 N -0.167 5.167 11 N -0.165 5.165 12 C -0.045 4.045 13 C -0.080 4.080 14 C 0.281 3.719 15 O -0.472 6.472 16 N -0.338 5.338 17 C -0.067 4.067 18 C 0.137 3.863 19 C -0.577 4.577 20 H 0.072 0.928 21 C -0.193 4.193 22 N -0.569 5.569 23 Si 0.793 3.207 24 H -0.190 1.190 25 H -0.194 1.194 26 H -0.209 1.209 27 H 0.108 0.892 28 H 0.061 0.939 29 H 0.105 0.895 30 H 0.162 0.838 31 H 0.097 0.903 32 H 0.071 0.929 33 H 0.060 0.940 34 H 0.185 0.815 35 H 0.100 0.900 36 H 0.137 0.863 37 H 0.103 0.897 38 H 0.231 0.769 39 H 0.094 0.906 40 H 0.084 0.916 41 H 0.114 0.886 42 H 0.042 0.958 43 H 0.013 0.987 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.874 10.157 -24.031 27.896 hybrid contribution 1.836 0.528 1.690 2.550 sum -8.039 10.685 -22.341 26.037 Atomic orbital electron populations 1.21981 0.90695 1.02544 1.04354 1.21424 0.98560 0.96414 0.86669 0.89427 1.60517 1.34792 1.32482 1.03240 1.19783 0.97616 0.91130 0.85707 0.87605 1.22458 0.97737 1.00684 1.02362 1.20009 1.07777 0.98664 0.97744 1.23725 0.99939 0.96439 0.93402 1.77286 1.13716 1.14036 1.11612 1.48786 1.38373 1.15213 1.14140 1.22159 0.98809 1.05953 0.77605 1.22792 1.00415 0.96006 0.88814 1.21422 0.79889 0.84735 0.85853 1.90621 1.40571 1.29208 1.86849 1.48098 1.50215 1.29488 1.06000 1.22138 0.94260 0.86481 1.03813 1.18754 0.93808 0.91667 0.82072 1.21711 1.05785 1.18988 1.11266 0.92830 1.25881 1.01864 0.95274 0.96304 1.70063 1.40663 1.27335 1.18880 0.85355 0.78665 0.78267 0.78430 1.18993 1.19366 1.20919 0.89152 0.93938 0.89547 0.83789 0.90307 0.92864 0.93992 0.81499 0.89956 0.86259 0.89688 0.76943 0.90598 0.91580 0.88594 0.95790 0.98703 0.92428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 9.03 71.98 0.65 -2.42 16 2 C 0.08 2.33 2.03 44.16 0.09 2.42 16 3 H 0.09 2.08 6.37 -2.39 -0.02 2.06 16 4 N -0.68 -19.37 5.67 -477.16 -2.71 -22.08 16 5 C 0.17 3.47 2.83 44.17 0.12 3.59 16 6 H 0.11 1.64 7.11 -2.39 -0.02 1.63 16 7 C -0.17 -3.48 9.13 71.98 0.66 -2.82 16 8 C -0.23 -5.06 5.09 -20.14 -0.10 -5.16 16 9 C 0.05 1.37 11.66 85.24 0.99 2.37 16 10 N -0.34 -9.47 12.58 -57.02 -0.72 -10.19 16 11 N -0.38 -7.32 4.01 -369.57 -1.48 -8.81 16 12 C 0.09 0.87 11.47 127.77 1.47 2.33 16 13 C 0.07 1.09 11.40 83.54 0.95 2.05 16 14 C 0.49 20.71 7.10 87.65 0.62 21.33 16 15 O -0.59 -31.32 15.23 -3.04 -0.05 -31.36 16 16 N -0.61 -25.76 2.86 -851.14 -2.43 -28.19 16 17 C 0.07 2.16 8.80 127.77 1.12 3.28 16 18 C 0.26 14.17 5.16 85.64 0.44 14.61 16 19 C -0.54 -31.31 9.39 25.60 0.24 -31.07 16 20 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 21 C 0.01 0.32 5.46 84.65 0.46 0.78 16 22 N -0.93 -56.99 13.29 21.45 0.28 -56.70 16 23 Si 0.97 45.29 29.54 68.60 2.03 47.32 16 24 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 25 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 26 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 27 H 0.09 1.45 7.43 -2.39 -0.02 1.43 16 28 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.09 1.65 4.53 -2.38 -0.01 1.64 16 30 H 0.34 11.76 7.19 -89.69 -0.64 11.11 16 31 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.05 1.09 7.43 -2.39 -0.02 1.07 16 33 H 0.04 0.98 8.13 -2.39 -0.02 0.97 16 34 H 0.17 4.75 8.06 -2.91 -0.02 4.73 16 35 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.12 0.26 8.14 -2.39 -0.02 0.24 16 37 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.21 1.41 8.06 -2.91 -0.02 1.39 16 39 H 0.08 1.79 6.95 -2.39 -0.02 1.78 16 40 H 0.07 2.00 8.07 -2.39 -0.02 1.98 16 41 H 0.10 2.04 6.01 -2.38 -0.01 2.03 16 42 H 0.02 1.33 8.07 -2.39 -0.02 1.31 16 43 H -0.01 -0.33 7.42 -2.39 -0.02 -0.35 16 44 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -82.30 360.70 3.00 -79.29 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: 0.35 Total: 19.43 kcal Atomic # 6 Polarization: 3.57 SS G_CDS: 7.72 Total: 11.29 kcal Atomic # 7 Polarization: -118.92 SS G_CDS: -7.05 Total: -125.97 kcal Atomic # 8 Polarization: -31.32 SS G_CDS: -0.05 Total: -31.36 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -82.30 3.00 -79.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273371802.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.699 kcal (2) G-P(sol) polarization free energy of solvation -82.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds