Wall clock time and date at job start Tue Mar 31 2020 03:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47340 * 2 1 4 4 N 1.46906 * 109.47113 * 119.99821 * 2 1 3 5 5 C 1.46901 * 110.99793 * 275.00325 * 4 2 1 6 6 C 1.53000 * 109.46769 * 180.02562 * 5 4 2 7 7 C 1.50703 * 109.46912 * 179.97438 * 6 5 4 8 8 O 1.21278 * 119.99985 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00161 * 179.97438 * 7 6 5 10 10 C 1.46505 * 119.99832 * 0.02562 * 9 7 6 11 11 C 1.46496 * 120.00271 * 179.97438 * 9 7 6 12 12 C 1.50705 * 109.47066 * 90.00086 * 11 9 7 13 13 H 1.08001 * 119.99987 * 0.02562 * 12 11 9 14 14 C 1.37872 * 120.00127 * 179.97438 * 12 11 9 15 15 N 1.31516 * 120.00037 * 180.02562 * 14 12 11 16 16 Si 1.86799 * 120.00065 * 0.02562 * 14 12 11 17 17 H 1.48497 * 109.47380 * 89.99525 * 16 14 12 18 18 H 1.48502 * 109.46914 * 210.00057 * 16 14 12 19 19 H 1.48507 * 109.46856 * 329.99469 * 16 14 12 20 20 C 1.50696 * 109.47391 * 239.99666 * 2 1 3 21 21 C 1.39873 * 126.04368 * 280.02850 * 20 2 1 22 22 N 1.30837 * 108.20321 * 179.97438 * 21 20 2 23 23 N 1.40078 * 108.20605 * 359.97438 * 22 21 20 24 24 C 1.46502 * 126.03600 * 180.02562 * 23 22 21 25 25 C 1.34952 * 107.92736 * 359.76158 * 23 22 21 26 26 H 1.08995 * 109.47731 * 300.00135 * 1 2 3 27 27 H 1.08996 * 109.47268 * 60.00580 * 1 2 3 28 28 H 1.09003 * 109.47340 * 179.97438 * 1 2 3 29 29 H 1.00899 * 110.99995 * 151.04723 * 4 2 1 30 30 H 1.09002 * 109.47401 * 59.99808 * 5 4 2 31 31 H 1.09001 * 109.46874 * 299.99821 * 5 4 2 32 32 H 1.09001 * 109.47194 * 299.99524 * 6 5 4 33 33 H 1.08992 * 109.47399 * 59.99697 * 6 5 4 34 34 H 1.09003 * 109.46862 * 89.99771 * 10 9 7 35 35 H 1.08996 * 109.47101 * 209.99896 * 10 9 7 36 36 H 1.09003 * 109.46885 * 329.99503 * 10 9 7 37 37 H 1.08998 * 109.47205 * 209.99950 * 11 9 7 38 38 H 1.08997 * 109.47416 * 330.00811 * 11 9 7 39 39 H 0.97001 * 119.99958 * 180.02562 * 15 14 12 40 40 H 1.07998 * 125.89632 * 359.97438 * 21 20 2 41 41 H 1.09000 * 109.47369 * 89.98014 * 24 23 22 42 42 H 1.09000 * 109.47146 * 209.97520 * 24 23 22 43 43 H 1.09004 * 109.46907 * 329.97227 * 24 23 22 44 44 H 1.07998 * 126.12737 * 180.23697 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 2.0823 0.2227 2.3469 6 6 2.5961 -0.5328 3.5742 7 6 2.6610 0.4062 4.7512 8 8 2.3286 1.5653 4.6213 9 7 3.0875 -0.0424 5.9484 10 6 3.4885 -1.4427 6.1055 11 6 3.1512 0.8704 7.0924 12 6 1.8384 0.8414 7.8319 13 1 1.0370 0.2061 7.4848 14 6 1.6608 1.6249 8.9524 15 7 0.5153 1.5992 9.5980 16 14 3.0471 2.7232 9.5533 17 1 2.9378 4.0563 8.9082 18 1 2.9530 2.8773 11.0273 19 1 4.3528 2.1090 9.2023 20 6 2.0323 -0.7104 -1.2304 21 6 2.1210 -2.0957 -1.4023 22 7 2.6015 -2.3294 -2.5966 23 7 2.8336 -1.0985 -3.2235 24 6 3.3693 -0.9063 -4.5735 25 6 2.4710 -0.1210 -2.3667 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 2.9173 -1.1205 1.0288 30 1 1.0869 0.6164 2.5525 31 1 2.7587 1.0463 2.1182 32 1 1.9201 -1.3566 3.8031 33 1 3.5915 -0.9261 3.3683 34 1 4.5532 -1.5417 5.8936 35 1 3.2900 -1.7651 7.1276 36 1 2.9207 -2.0632 5.4121 37 1 3.9525 0.5583 7.7622 38 1 3.3466 1.8829 6.7390 39 1 0.3902 2.1507 10.3861 40 1 1.8412 -2.8433 -0.6748 41 1 2.5478 -0.8730 -5.2891 42 1 3.9246 0.0308 -4.6140 43 1 4.0342 -1.7336 -4.8217 44 1 2.5243 0.9414 -2.5533 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273439800.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:34:54 Heat of formation + Delta-G solvation = 47.064742 kcal Electronic energy + Delta-G solvation = -22987.071138 eV Core-core repulsion = 19555.511420 eV Total energy + Delta-G solvation = -3431.559719 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.47863 -39.11595 -37.00214 -34.89175 -33.59802 -32.62369 -32.19585 -29.93700 -28.93587 -27.82817 -26.88732 -25.82213 -23.68602 -22.38276 -21.62279 -20.96117 -20.03096 -18.35217 -17.20632 -16.93354 -16.37205 -15.85554 -15.74171 -15.32297 -14.90749 -14.76889 -14.54124 -14.01119 -13.95521 -13.33216 -13.21456 -12.95022 -12.89615 -12.61052 -12.45860 -12.28774 -12.17619 -11.97078 -11.69306 -11.58070 -11.55778 -11.22109 -11.02281 -10.83197 -10.56256 -10.48917 -10.12078 -9.67194 -9.51490 -8.97040 -8.64591 -8.56506 -8.43888 -7.66115 -6.06095 -4.04578 1.61114 2.24357 2.56937 3.30791 3.36715 3.38373 3.40597 3.76710 4.16156 4.34640 4.41805 4.56965 4.73185 4.80337 4.98222 5.04924 5.14916 5.17026 5.24658 5.30646 5.35324 5.49365 5.54566 5.62862 5.66678 5.80044 5.84454 5.89637 5.95961 6.13059 6.22277 6.24044 6.29991 6.43297 6.69224 6.73089 6.97153 7.04848 7.37701 7.39933 7.46268 7.63961 8.29419 8.50155 8.96250 9.03291 9.54281 11.07326 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.034292 B = 0.002453 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.327680 B =11410.221594 C =11540.360066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.164 3.836 3 H 0.048 0.952 4 N -0.684 5.684 5 C 0.075 3.925 6 C -0.135 4.135 7 C 0.507 3.493 8 O -0.545 6.545 9 N -0.599 5.599 10 C 0.083 3.917 11 C 0.215 3.785 12 C -0.527 4.527 13 H 0.074 0.926 14 C 0.071 3.929 15 N -0.898 5.898 16 Si 0.877 3.123 17 H -0.274 1.274 18 H -0.285 1.285 19 H -0.266 1.266 20 C -0.237 4.237 21 C 0.069 3.931 22 N -0.302 5.302 23 N -0.380 5.380 24 C 0.103 3.897 25 C 0.057 3.943 26 H 0.058 0.942 27 H 0.051 0.949 28 H 0.061 0.939 29 H 0.339 0.661 30 H 0.082 0.918 31 H 0.036 0.964 32 H 0.098 0.902 33 H 0.083 0.917 34 H 0.044 0.956 35 H 0.075 0.925 36 H 0.063 0.937 37 H 0.029 0.971 38 H 0.036 0.964 39 H 0.264 0.736 40 H 0.187 0.813 41 H 0.073 0.927 42 H 0.086 0.914 43 H 0.088 0.912 44 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.850 -6.532 -25.536 27.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.054 3.946 3 H 0.066 0.934 4 N -0.315 5.315 5 C -0.054 4.054 6 C -0.176 4.176 7 C 0.294 3.706 8 O -0.423 6.423 9 N -0.331 5.331 10 C -0.061 4.061 11 C 0.094 3.906 12 C -0.566 4.566 13 H 0.093 0.907 14 C -0.131 4.131 15 N -0.536 5.536 16 Si 0.704 3.296 17 H -0.199 1.199 18 H -0.211 1.211 19 H -0.191 1.191 20 C -0.249 4.249 21 C -0.117 4.117 22 N -0.124 5.124 23 N -0.162 5.162 24 C -0.039 4.039 25 C -0.089 4.089 26 H 0.077 0.923 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.157 0.843 30 H 0.101 0.899 31 H 0.055 0.945 32 H 0.116 0.884 33 H 0.101 0.899 34 H 0.062 0.938 35 H 0.093 0.907 36 H 0.081 0.919 37 H 0.047 0.953 38 H 0.054 0.946 39 H 0.074 0.926 40 H 0.204 0.796 41 H 0.091 0.909 42 H 0.104 0.896 43 H 0.107 0.893 44 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 6.386 -6.956 -26.259 27.905 hybrid contribution 1.132 1.691 0.825 2.196 sum 7.519 -5.266 -25.434 27.040 Atomic orbital electron populations 1.21772 0.93960 1.02413 1.01118 1.19665 0.95416 0.94365 0.85174 0.93434 1.60560 1.33202 1.33621 1.04122 1.21706 1.02079 0.92960 0.88637 1.21591 1.02837 0.99439 0.93710 1.20342 0.77712 0.88636 0.83940 1.90661 1.48399 1.18928 1.84266 1.47845 1.64142 1.10757 1.10391 1.21667 0.98504 0.82638 1.03247 1.19652 0.97804 0.89747 0.83399 1.21339 0.98647 1.26321 1.10260 0.90746 1.24872 0.95627 0.96370 0.96273 1.69902 1.23832 1.40446 1.19458 0.86838 0.82916 0.81835 0.78008 1.19944 1.21094 1.19110 1.20172 1.13241 0.93792 0.97708 1.23807 0.97769 0.96075 0.94081 1.77387 1.22679 1.03233 1.09059 1.48461 1.50181 1.04023 1.13543 1.21832 0.99567 1.03583 0.78907 1.22316 1.00307 0.95398 0.90907 0.92266 0.93014 0.91971 0.84302 0.89920 0.94540 0.88410 0.89909 0.93777 0.90669 0.91878 0.95327 0.94635 0.92598 0.79599 0.90853 0.89574 0.89332 0.81102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.39 9.40 37.15 0.35 -1.04 16 2 C 0.16 1.68 3.05 -68.87 -0.21 1.47 16 3 H 0.05 0.50 7.79 -51.93 -0.40 0.09 16 4 N -0.68 -7.49 6.11 -107.95 -0.66 -8.15 16 5 C 0.08 1.03 4.77 -3.82 -0.02 1.01 16 6 C -0.14 -1.92 4.51 -27.88 -0.13 -2.05 16 7 C 0.51 10.27 7.67 -10.98 -0.08 10.19 16 8 O -0.54 -13.36 15.56 5.56 0.09 -13.28 16 9 N -0.60 -12.44 2.86 -182.95 -0.52 -12.96 16 10 C 0.08 1.28 10.24 59.85 0.61 1.89 16 11 C 0.21 5.33 4.23 -5.19 -0.02 5.31 16 12 C -0.53 -15.35 9.94 -34.44 -0.34 -15.69 16 13 H 0.07 2.38 8.06 -52.49 -0.42 1.95 16 14 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 15 N -0.90 -27.95 13.96 55.43 0.77 -27.17 16 16 Si 0.88 21.79 27.47 -169.99 -4.67 17.12 16 17 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 18 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 19 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 20 C -0.24 -2.30 4.81 -105.05 -0.51 -2.80 16 21 C 0.07 0.71 11.46 -17.36 -0.20 0.51 16 22 N -0.30 -3.39 12.58 30.62 0.39 -3.01 16 23 N -0.38 -3.36 4.01 -68.16 -0.27 -3.63 16 24 C 0.10 0.47 11.47 59.85 0.69 1.16 16 25 C 0.06 0.48 11.40 -17.22 -0.20 0.29 16 26 H 0.06 0.67 7.45 -51.93 -0.39 0.28 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.34 3.39 8.15 -39.29 -0.32 3.07 16 30 H 0.08 1.29 7.39 -51.93 -0.38 0.91 16 31 H 0.04 0.53 8.01 -51.93 -0.42 0.11 16 32 H 0.10 1.31 7.40 -51.93 -0.38 0.93 16 33 H 0.08 0.97 8.11 -51.93 -0.42 0.55 16 34 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 36 H 0.06 0.80 6.44 -51.93 -0.33 0.47 16 37 H 0.03 0.68 7.13 -51.93 -0.37 0.31 16 38 H 0.04 0.94 6.85 -51.93 -0.36 0.58 16 39 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 40 H 0.19 1.65 8.06 -52.49 -0.42 1.23 16 41 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 42 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 43 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.17 0.94 8.06 -52.49 -0.42 0.51 16 LS Contribution 365.86 15.07 5.51 5.51 Total: -1.00 -36.35 365.86 -6.69 -43.04 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -7.17 Total: 0.29 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: -0.15 Total: 2.23 kcal Atomic # 7 Polarization: -54.62 SS G_CDS: -0.30 Total: -54.92 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: 0.09 Total: -13.28 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.67 Total: 17.12 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -36.35 -6.69 -43.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273439800.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.105 kcal (2) G-P(sol) polarization free energy of solvation -36.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds