Wall clock time and date at job start Tue Mar 31 2020 03:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47378 * 2 1 4 4 H 1.09004 * 109.47106 * 305.00434 * 3 2 1 5 5 C 1.50699 * 109.47540 * 184.99960 * 3 2 1 6 6 H 1.08003 * 120.00285 * 240.00274 * 5 3 2 7 7 C 1.37875 * 119.99802 * 59.99516 * 5 3 2 8 8 N 1.31513 * 120.00085 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00137 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47046 * 90.00234 * 9 7 5 11 11 H 1.48492 * 109.47194 * 210.00323 * 9 7 5 12 12 H 1.48504 * 109.47049 * 330.00589 * 9 7 5 13 13 N 1.46502 * 109.47117 * 64.99698 * 3 2 1 14 14 C 1.34775 * 120.00576 * 275.00099 * 13 3 2 15 15 O 1.21282 * 119.99517 * 354.51152 * 14 13 3 16 16 C 1.50691 * 120.00355 * 174.50649 * 14 13 3 17 17 H 1.09002 * 109.47276 * 31.79389 * 16 14 13 18 18 C 1.50700 * 109.47469 * 271.79562 * 16 14 13 19 19 C 1.34672 * 126.59166 * 275.82917 * 18 16 14 20 20 N 1.34120 * 108.02117 * 179.97438 * 19 18 16 21 21 C 1.30504 * 109.25821 * 359.97438 * 20 19 18 22 22 N 1.35044 * 108.69715 * 359.77314 * 21 20 19 23 23 C 1.46493 * 126.39571 * 180.26598 * 22 21 20 24 24 N 1.46902 * 109.47211 * 151.79481 * 16 14 13 25 25 C 1.46900 * 111.00238 * 177.74873 * 24 16 14 26 26 C 1.46895 * 111.00088 * 301.70325 * 24 16 14 27 27 H 1.09001 * 109.47076 * 299.99941 * 1 2 3 28 28 H 1.08999 * 109.47330 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47008 * 59.99670 * 1 2 3 30 30 H 1.08999 * 109.46821 * 119.99861 * 2 1 3 31 31 H 1.09001 * 109.47076 * 240.00059 * 2 1 3 32 32 H 0.97004 * 120.00178 * 179.97438 * 8 7 5 33 33 H 0.97009 * 119.99929 * 95.00253 * 13 3 2 34 34 H 1.08004 * 125.98930 * 359.95661 * 19 18 16 35 35 H 1.07997 * 125.64655 * 180.02562 * 21 20 19 36 36 H 1.09001 * 109.47457 * 275.00607 * 23 22 21 37 37 H 1.09002 * 109.47502 * 35.00665 * 23 22 21 38 38 H 1.08999 * 109.47330 * 155.01097 * 23 22 21 39 39 H 1.08998 * 109.46952 * 61.16837 * 25 24 16 40 40 H 1.08995 * 109.47308 * 181.17175 * 25 24 16 41 41 H 1.09004 * 109.47267 * 301.17498 * 25 24 16 42 42 H 1.09004 * 109.47031 * 56.04891 * 26 24 16 43 43 H 1.09002 * 109.47304 * 176.04138 * 26 24 16 44 44 H 1.08999 * 109.47200 * 296.04579 * 26 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5420 1.4443 -0.1238 6 1 4.1473 1.8888 0.6523 7 6 4.1433 0.8783 -1.2279 8 7 3.4062 0.3373 -2.1732 9 14 6.0050 0.8799 -1.3811 10 1 6.5539 -0.3521 -0.7598 11 1 6.3835 0.9213 -2.8164 12 1 6.5576 2.0718 -0.6889 13 7 1.6525 2.0975 1.2518 14 6 0.4352 2.6644 1.3670 15 8 -0.3010 2.7206 0.4049 16 6 -0.0111 3.2285 2.6912 17 1 0.8541 3.6093 3.2340 18 6 -0.6748 2.1446 3.5009 19 6 -1.9615 1.7557 3.4197 20 7 -2.1527 0.7664 4.3049 21 6 -1.0331 0.5270 4.9314 22 7 -0.0840 1.3617 4.4558 23 6 1.3157 1.4203 4.8840 24 7 -0.9651 4.3217 2.4613 25 6 -1.4635 4.8617 3.7333 26 6 -0.3643 5.3805 1.6393 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 3.8293 -0.0606 -2.9502 33 1 2.2720 2.1231 1.9978 34 1 -2.7087 2.1683 2.7579 35 1 -0.8886 -0.2181 5.6996 36 1 1.4002 2.0578 5.7641 37 1 1.6635 0.4165 5.1279 38 1 1.9252 1.8303 4.0787 39 1 -0.6297 5.2636 4.3089 40 1 -2.1834 5.6554 3.5338 41 1 -1.9471 4.0667 4.3010 42 1 -0.0036 4.9534 0.7035 43 1 -1.1129 6.1435 1.4256 44 1 0.4693 5.8303 2.1785 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280891469.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:39 Heat of formation + Delta-G solvation = 40.019055 kcal Electronic energy + Delta-G solvation = -25450.496329 eV Core-core repulsion = 22018.631086 eV Total energy + Delta-G solvation = -3431.865243 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.11378 -39.34631 -36.84970 -34.92719 -34.02365 -32.44703 -31.23256 -30.48716 -27.87093 -27.15660 -26.93399 -26.34534 -23.26052 -22.39956 -21.26768 -20.87978 -19.62775 -19.22012 -17.47970 -17.01237 -16.03935 -15.93796 -15.34338 -15.20229 -14.97139 -14.41977 -14.10290 -13.89529 -13.74450 -13.40002 -13.00584 -12.84343 -12.77409 -12.67421 -12.39290 -12.25093 -11.90210 -11.75748 -11.58976 -11.28696 -11.26441 -11.02697 -10.84247 -10.34916 -10.19776 -9.88237 -9.66729 -9.56479 -9.16866 -9.06345 -8.55526 -8.32524 -8.10774 -7.85971 -6.16472 -4.26625 2.02814 2.71231 3.19425 3.23857 3.26804 3.28304 3.40906 3.68714 4.21357 4.36787 4.64217 4.70465 4.79209 4.97696 4.97884 5.14647 5.21786 5.23852 5.32618 5.44339 5.52268 5.63589 5.66887 5.89205 5.95804 6.14245 6.32098 6.39598 6.46228 6.66149 6.83031 6.92581 7.02340 7.05094 7.19697 7.25351 7.34159 7.40911 7.57722 7.68410 7.85993 8.14344 8.18173 8.59530 8.73557 9.07632 9.40867 10.88651 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.017612 B = 0.005097 C = 0.004747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.400197 B = 5492.223105 C = 5897.407905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.125 4.125 3 C 0.273 3.727 4 H 0.051 0.949 5 C -0.535 4.535 6 H 0.059 0.941 7 C 0.068 3.932 8 N -0.880 5.880 9 Si 0.900 3.100 10 H -0.280 1.280 11 H -0.284 1.284 12 H -0.274 1.274 13 N -0.710 5.710 14 C 0.513 3.487 15 O -0.518 6.518 16 C 0.147 3.853 17 H 0.053 0.947 18 C -0.018 4.018 19 C 0.015 3.985 20 N -0.496 5.496 21 C 0.181 3.819 22 N -0.456 5.456 23 C 0.069 3.931 24 N -0.513 5.513 25 C 0.024 3.976 26 C 0.022 3.978 27 H 0.038 0.962 28 H 0.023 0.977 29 H 0.049 0.951 30 H 0.027 0.973 31 H 0.099 0.901 32 H 0.265 0.735 33 H 0.380 0.620 34 H 0.174 0.826 35 H 0.204 0.796 36 H 0.076 0.924 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.020 0.980 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.084 0.916 43 H 0.073 0.927 44 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.610 5.220 14.911 16.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.164 4.164 3 C 0.171 3.829 4 H 0.069 0.931 5 C -0.574 4.574 6 H 0.077 0.923 7 C -0.136 4.136 8 N -0.517 5.517 9 Si 0.727 3.273 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.199 1.199 13 N -0.359 5.359 14 C 0.295 3.705 15 O -0.393 6.393 16 C 0.033 3.967 17 H 0.071 0.929 18 C -0.133 4.133 19 C -0.134 4.134 20 N -0.215 5.215 21 C -0.101 4.101 22 N -0.140 5.140 23 C -0.074 4.074 24 N -0.238 5.238 25 C -0.124 4.124 26 C -0.125 4.125 27 H 0.057 0.943 28 H 0.042 0.958 29 H 0.068 0.932 30 H 0.046 0.954 31 H 0.117 0.883 32 H 0.075 0.925 33 H 0.212 0.788 34 H 0.191 0.809 35 H 0.220 0.780 36 H 0.095 0.905 37 H 0.110 0.890 38 H 0.102 0.898 39 H 0.038 0.962 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.103 0.897 43 H 0.092 0.908 44 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -5.113 4.546 13.903 15.496 hybrid contribution 2.940 0.597 0.689 3.078 sum -2.173 5.143 14.592 15.624 Atomic orbital electron populations 1.21805 0.98209 0.98283 1.01179 1.21914 0.92659 0.99733 1.02053 1.18784 0.94152 0.89069 0.80859 0.93097 1.21189 0.90658 1.39231 1.06311 0.92295 1.24876 0.98526 0.94797 0.95371 1.69892 1.35126 1.37388 1.09298 0.86479 0.84942 0.78370 0.77482 1.20573 1.21003 1.19926 1.46531 1.14275 1.56515 1.18530 1.19824 0.82690 0.79333 0.88640 1.90686 1.53473 1.56563 1.38586 1.19812 0.93063 0.90070 0.93755 0.92937 1.20406 0.94988 1.00236 0.97642 1.22076 0.94737 0.96340 1.00223 1.70330 1.25000 1.16344 1.09785 1.24885 0.83916 0.98526 1.02740 1.45181 1.10433 1.28593 1.29828 1.22076 0.79313 1.04501 1.01495 1.61541 1.36361 1.09079 1.16802 1.22463 0.99293 1.00316 0.90301 1.22491 0.97953 0.93612 0.98486 0.94265 0.95808 0.93151 0.95400 0.88293 0.92494 0.78785 0.80907 0.77983 0.90535 0.89024 0.89766 0.96164 0.90948 0.90820 0.89732 0.90827 0.95995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.16 8.59 37.16 0.32 -2.84 16 2 C -0.12 -3.02 5.45 -26.73 -0.15 -3.17 16 3 C 0.27 6.68 2.25 -69.08 -0.16 6.53 16 4 H 0.05 1.46 7.50 -51.93 -0.39 1.07 16 5 C -0.54 -13.69 8.73 -34.44 -0.30 -13.99 16 6 H 0.06 1.43 7.74 -52.48 -0.41 1.03 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.28 11.29 55.43 0.63 -23.66 16 9 Si 0.90 20.11 29.54 -169.99 -5.02 15.09 16 10 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 12 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 13 N -0.71 -14.16 5.02 -54.94 -0.28 -14.44 16 14 C 0.51 9.94 4.26 -10.99 -0.05 9.89 16 15 O -0.52 -11.92 13.07 5.56 0.07 -11.85 16 16 C 0.15 2.24 1.99 -70.02 -0.14 2.10 16 17 H 0.05 0.71 7.50 -51.93 -0.39 0.32 16 18 C -0.02 -0.28 4.85 -81.60 -0.40 -0.67 16 19 C 0.01 0.24 10.19 -17.81 -0.18 0.06 16 20 N -0.50 -7.92 11.25 -14.66 -0.16 -8.09 16 21 C 0.18 2.30 12.56 -90.37 -1.14 1.16 16 22 N -0.46 -5.69 3.15 -121.37 -0.38 -6.08 16 23 C 0.07 0.60 10.91 59.84 0.65 1.25 16 24 N -0.51 -7.46 4.35 -246.01 -1.07 -8.53 16 25 C 0.02 0.28 9.21 60.06 0.55 0.83 16 26 C 0.02 0.31 9.25 60.06 0.56 0.86 16 27 H 0.04 0.90 5.76 -51.93 -0.30 0.60 16 28 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.05 1.23 7.93 -51.93 -0.41 0.82 16 30 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.10 2.66 5.95 -51.93 -0.31 2.35 16 32 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 33 H 0.38 6.57 7.53 -40.82 -0.31 6.26 16 34 H 0.17 2.91 8.06 -52.48 -0.42 2.49 16 35 H 0.20 1.72 8.06 -52.49 -0.42 1.29 16 36 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.08 0.78 6.42 -51.93 -0.33 0.45 16 39 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.07 0.90 6.13 -51.93 -0.32 0.58 16 42 H 0.08 1.42 6.17 -51.93 -0.32 1.10 16 43 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.02 0.27 8.14 -51.93 -0.42 -0.16 16 LS Contribution 350.72 15.07 5.29 5.29 Total: -1.00 -31.72 350.72 -8.29 -40.02 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: -6.85 Total: 8.54 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: -0.51 Total: 3.70 kcal Atomic # 7 Polarization: -59.52 SS G_CDS: -1.27 Total: -60.78 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: 0.07 Total: -11.85 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.72 -8.29 -40.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280891469.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.035 kcal (2) G-P(sol) polarization free energy of solvation -31.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds