Wall clock time and date at job start Tue Mar 31 2020 03:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.46956 * 2 1 4 4 H 1.09003 * 109.47175 * 304.99559 * 3 2 1 5 5 C 1.50699 * 109.47029 * 185.00090 * 3 2 1 6 6 H 1.08001 * 119.99696 * 239.99479 * 5 3 2 7 7 C 1.37880 * 120.00342 * 59.99852 * 5 3 2 8 8 N 1.31511 * 119.99688 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 120.00111 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47197 * 89.99886 * 9 7 5 11 11 H 1.48502 * 109.47085 * 209.99772 * 9 7 5 12 12 H 1.48503 * 109.47269 * 329.99607 * 9 7 5 13 13 N 1.46495 * 109.47720 * 64.99768 * 3 2 1 14 14 C 1.34777 * 120.00188 * 275.00364 * 13 3 2 15 15 O 1.21285 * 119.99855 * 354.47418 * 14 13 3 16 16 C 1.50699 * 120.00614 * 174.47128 * 14 13 3 17 17 H 1.09007 * 109.46565 * 323.44925 * 16 14 13 18 18 C 1.50700 * 109.46907 * 83.44689 * 16 14 13 19 19 C 1.34667 * 126.59176 * 84.17117 * 18 16 14 20 20 N 1.34130 * 108.02235 * 179.87402 * 19 18 16 21 21 C 1.30506 * 109.25152 * 0.39632 * 20 19 18 22 22 N 1.35042 * 108.70269 * 359.75758 * 21 20 19 23 23 C 1.46494 * 126.39708 * 179.97438 * 22 21 20 24 24 N 1.46896 * 109.47590 * 203.44610 * 16 14 13 25 25 C 1.46905 * 110.99407 * 58.74465 * 24 16 14 26 26 C 1.46902 * 111.00171 * 182.69482 * 24 16 14 27 27 H 1.09004 * 109.46877 * 60.00529 * 1 2 3 28 28 H 1.09001 * 109.47386 * 300.00197 * 1 2 3 29 29 H 1.08999 * 109.47133 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46877 * 119.99471 * 2 1 3 31 31 H 1.09001 * 109.47386 * 239.99803 * 2 1 3 32 32 H 0.97006 * 120.00060 * 180.02562 * 8 7 5 33 33 H 0.96997 * 120.00233 * 94.99440 * 13 3 2 34 34 H 1.07991 * 125.99002 * 0.02873 * 19 18 16 35 35 H 1.08005 * 125.64585 * 179.76939 * 21 20 19 36 36 H 1.09003 * 109.47660 * 274.51347 * 23 22 21 37 37 H 1.09006 * 109.47169 * 34.51269 * 23 22 21 38 38 H 1.09004 * 109.47255 * 154.50830 * 23 22 21 39 39 H 1.08992 * 109.47490 * 55.08206 * 25 24 16 40 40 H 1.09005 * 109.46903 * 175.07909 * 25 24 16 41 41 H 1.09000 * 109.47393 * 295.07526 * 25 24 16 42 42 H 1.08994 * 109.46634 * 63.79384 * 26 24 16 43 43 H 1.08999 * 109.47221 * 183.80049 * 26 24 16 44 44 H 1.09003 * 109.46873 * 303.79549 * 26 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5419 1.4443 -0.1239 6 1 4.1471 1.8890 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4063 0.3366 -2.1728 9 14 6.0050 0.8801 -1.3811 10 1 6.5539 -0.3520 -0.7597 11 1 6.3836 0.9214 -2.8164 12 1 6.5576 2.0721 -0.6889 13 7 1.6524 2.0976 1.2517 14 6 0.4351 2.6645 1.3668 15 8 -0.3009 2.7211 0.4045 16 6 -0.0116 3.2280 2.6912 17 1 0.3619 2.5979 3.4986 18 6 0.5313 4.6246 2.8516 19 6 -0.0147 5.7582 2.3718 20 7 0.7718 6.7829 2.7328 21 6 1.7891 6.3263 3.4110 22 7 1.6775 4.9840 3.5081 23 6 2.6092 4.0812 4.1884 24 7 -1.4793 3.2649 2.7377 25 6 -2.0457 1.9219 2.5544 26 6 -1.9514 3.8687 3.9910 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5138 0.8901 31 1 1.8934 -0.5139 -0.8900 32 1 3.8294 -0.0619 -2.9495 33 1 2.2719 2.1233 1.9977 34 1 -0.9274 5.8300 1.7990 35 1 2.5878 6.9232 3.8261 36 1 3.4177 3.8133 3.5081 37 1 3.0225 4.5791 5.0656 38 1 2.0808 3.1794 4.4978 39 1 -1.6200 1.2439 3.2940 40 1 -3.1277 1.9636 2.6800 41 1 -1.8098 1.5616 1.5530 42 1 -1.6300 4.9092 4.0364 43 1 -3.0397 3.8224 4.0293 44 1 -1.5345 3.3223 4.8370 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280891471.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:40 Heat of formation + Delta-G solvation = 40.308991 kcal Electronic energy + Delta-G solvation = -25366.979867 eV Core-core repulsion = 21935.127197 eV Total energy + Delta-G solvation = -3431.852670 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.10598 -39.36753 -36.81550 -34.93715 -34.02473 -32.45002 -31.39092 -30.34148 -27.97875 -27.09002 -26.90509 -26.38958 -23.33773 -22.32526 -21.26979 -20.90670 -19.69279 -19.19043 -17.46218 -17.08436 -16.04967 -15.87097 -15.30351 -15.23187 -14.92424 -14.42555 -14.20076 -13.92537 -13.75343 -13.37008 -12.98331 -12.79694 -12.78293 -12.68724 -12.50080 -12.20834 -11.97948 -11.69525 -11.61352 -11.32135 -11.30553 -11.03357 -10.85107 -10.35075 -10.19066 -9.88155 -9.69516 -9.56292 -9.16960 -9.07823 -8.55564 -8.30829 -8.11403 -7.85285 -6.16417 -4.26006 2.04286 2.71197 3.19836 3.24597 3.27544 3.28978 3.39460 3.69698 4.22221 4.38538 4.60262 4.68526 4.79840 4.92355 5.06971 5.15107 5.20703 5.29837 5.32582 5.43135 5.52329 5.62762 5.66795 5.89709 5.95192 6.10351 6.31072 6.31699 6.42043 6.57114 6.83287 6.92119 6.95087 7.06656 7.14745 7.25521 7.29742 7.39846 7.56410 7.67291 7.86099 8.13191 8.18406 8.60060 8.73751 9.08078 9.41311 10.88898 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.015521 B = 0.005645 C = 0.004526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.632560 B = 4959.193162 C = 6184.848450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.127 4.127 3 C 0.272 3.728 4 H 0.051 0.949 5 C -0.534 4.534 6 H 0.058 0.942 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.900 3.100 10 H -0.280 1.280 11 H -0.284 1.284 12 H -0.275 1.275 13 N -0.709 5.709 14 C 0.513 3.487 15 O -0.519 6.519 16 C 0.147 3.853 17 H 0.055 0.945 18 C -0.021 4.021 19 C 0.013 3.987 20 N -0.497 5.497 21 C 0.181 3.819 22 N -0.456 5.456 23 C 0.065 3.935 24 N -0.513 5.513 25 C 0.018 3.982 26 C 0.024 3.976 27 H 0.051 0.949 28 H 0.037 0.963 29 H 0.025 0.975 30 H 0.030 0.970 31 H 0.100 0.900 32 H 0.265 0.735 33 H 0.381 0.619 34 H 0.174 0.826 35 H 0.204 0.796 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.020 0.980 40 H 0.071 0.929 41 H 0.092 0.908 42 H 0.073 0.927 43 H 0.071 0.929 44 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.206 3.974 15.250 16.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.166 4.166 3 C 0.170 3.830 4 H 0.069 0.931 5 C -0.572 4.572 6 H 0.076 0.924 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.727 3.273 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.200 1.200 13 N -0.357 5.357 14 C 0.296 3.704 15 O -0.394 6.394 16 C 0.034 3.966 17 H 0.072 0.928 18 C -0.135 4.135 19 C -0.135 4.135 20 N -0.215 5.215 21 C -0.100 4.100 22 N -0.140 5.140 23 C -0.078 4.078 24 N -0.237 5.237 25 C -0.130 4.130 26 C -0.124 4.124 27 H 0.071 0.929 28 H 0.056 0.944 29 H 0.044 0.956 30 H 0.049 0.951 31 H 0.119 0.881 32 H 0.075 0.925 33 H 0.212 0.788 34 H 0.191 0.809 35 H 0.221 0.779 36 H 0.104 0.896 37 H 0.107 0.893 38 H 0.101 0.899 39 H 0.039 0.961 40 H 0.089 0.911 41 H 0.110 0.890 42 H 0.092 0.908 43 H 0.090 0.910 44 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -4.934 4.902 13.830 15.481 hybrid contribution 1.937 -1.459 1.244 2.725 sum -2.997 3.443 15.074 15.750 Atomic orbital electron populations 1.21899 0.98524 0.98314 1.01123 1.21942 0.92519 0.99834 1.02311 1.18784 0.94246 0.88957 0.80972 0.93085 1.21172 0.90656 1.39098 1.06288 0.92397 1.24871 0.98546 0.94820 0.95344 1.69883 1.35118 1.37442 1.09336 0.86477 0.84935 0.78338 0.77516 1.20557 1.20983 1.19952 1.46474 1.14290 1.56363 1.18602 1.19820 0.82992 0.78678 0.88920 1.90676 1.53759 1.56597 1.38386 1.19846 0.89401 0.90519 0.96881 0.92772 1.20454 0.91271 0.96390 1.05415 1.22084 1.01317 0.86904 1.03223 1.70333 1.04438 1.31905 1.14829 1.24891 1.00889 0.80759 1.03486 1.45188 1.19071 1.08441 1.41332 1.22129 0.93355 0.94177 0.98135 1.61533 1.04492 1.22585 1.35104 1.22620 0.99718 0.87557 1.03089 1.22472 1.00616 1.00379 0.88898 0.92945 0.94398 0.95587 0.95138 0.88149 0.92503 0.78779 0.80869 0.77940 0.89640 0.89290 0.89883 0.96104 0.91065 0.88971 0.90782 0.91026 0.96234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 8.59 37.16 0.32 -2.67 16 2 C -0.13 -2.98 5.45 -26.73 -0.15 -3.12 16 3 C 0.27 6.67 2.25 -69.09 -0.16 6.51 16 4 H 0.05 1.48 7.50 -51.93 -0.39 1.09 16 5 C -0.53 -13.76 8.73 -34.44 -0.30 -14.07 16 6 H 0.06 1.43 7.74 -52.49 -0.41 1.02 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.31 11.29 55.43 0.63 -23.68 16 9 Si 0.90 20.28 29.54 -169.99 -5.02 15.26 16 10 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 13 N -0.71 -14.27 5.02 -54.94 -0.28 -14.54 16 14 C 0.51 10.02 4.65 -10.99 -0.05 9.97 16 15 O -0.52 -11.94 12.83 5.55 0.07 -11.87 16 16 C 0.15 2.26 2.16 -70.02 -0.15 2.11 16 17 H 0.05 0.74 7.00 -51.93 -0.36 0.37 16 18 C -0.02 -0.32 4.92 -81.60 -0.40 -0.72 16 19 C 0.01 0.22 10.11 -17.81 -0.18 0.04 16 20 N -0.50 -8.03 11.25 -14.66 -0.17 -8.20 16 21 C 0.18 2.34 12.56 -90.37 -1.14 1.20 16 22 N -0.46 -5.75 3.15 -121.36 -0.38 -6.13 16 23 C 0.06 0.56 11.05 59.84 0.66 1.22 16 24 N -0.51 -7.47 4.34 -246.00 -1.07 -8.53 16 25 C 0.02 0.25 9.12 60.07 0.55 0.79 16 26 C 0.02 0.28 9.14 60.07 0.55 0.83 16 27 H 0.05 1.20 7.93 -51.93 -0.41 0.79 16 28 H 0.04 0.75 4.11 -51.93 -0.21 0.54 16 29 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.10 2.63 5.95 -51.93 -0.31 2.32 16 32 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 33 H 0.38 6.68 8.54 -40.82 -0.35 6.34 16 34 H 0.17 2.92 8.06 -52.49 -0.42 2.50 16 35 H 0.20 1.75 8.06 -52.48 -0.42 1.33 16 36 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.08 0.65 6.98 -51.93 -0.36 0.29 16 39 H 0.02 0.26 8.13 -51.93 -0.42 -0.16 16 40 H 0.07 0.83 7.98 -51.93 -0.41 0.42 16 41 H 0.09 1.55 4.64 -51.93 -0.24 1.31 16 42 H 0.07 0.91 6.24 -51.93 -0.32 0.58 16 43 H 0.07 0.72 7.99 -51.93 -0.42 0.30 16 44 H 0.02 0.21 8.14 -51.93 -0.42 -0.22 16 LS Contribution 348.63 15.07 5.25 5.25 Total: -1.00 -31.82 348.63 -8.21 -40.04 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: -6.71 Total: 8.62 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: -0.54 Total: 3.78 kcal Atomic # 7 Polarization: -59.82 SS G_CDS: -1.27 Total: -61.09 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: 0.07 Total: -11.87 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.82 -8.21 -40.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280891471.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.348 kcal (2) G-P(sol) polarization free energy of solvation -31.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds