Wall clock time and date at job start Tue Mar 31 2020 03:42:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46902 * 1
3 3 C 1.46897 * 110.99656 * 2 1
4 4 C 1.46894 * 110.99740 * 123.95719 * 2 1 3
5 5 C 1.52999 * 109.47426 * 66.04620 * 4 2 1
6 6 C 1.53002 * 109.46871 * 179.97438 * 5 4 2
7 7 N 1.46508 * 109.46689 * 180.02562 * 6 5 4
8 8 C 1.46494 * 119.99799 * 269.99853 * 7 6 5
9 9 C 1.50697 * 109.47331 * 268.26915 * 8 7 6
10 10 H 1.08000 * 119.99829 * 354.19062 * 9 8 7
11 11 C 1.37875 * 120.00244 * 174.20239 * 9 8 7
12 12 N 1.31514 * 120.00114 * 180.02562 * 11 9 8
13 13 Si 1.86801 * 119.99866 * 359.97438 * 11 9 8
14 14 H 1.48502 * 109.46862 * 90.00956 * 13 11 9
15 15 H 1.48504 * 109.46942 * 210.00186 * 13 11 9
16 16 H 1.48493 * 109.47424 * 330.00488 * 13 11 9
17 17 C 1.34778 * 119.99930 * 90.00041 * 7 6 5
18 18 O 1.21682 * 120.00139 * 354.99852 * 17 7 6
19 19 C 1.46760 * 119.99838 * 174.72126 * 17 7 6
20 20 C 1.36668 * 126.84369 * 352.36540 * 19 17 7
21 21 N 1.33324 * 107.78282 * 179.97438 * 20 19 17
22 22 C 1.30854 * 109.68713 * 0.02562 * 21 20 19
23 23 N 1.34502 * 109.16207 * 359.72221 * 22 21 20
24 24 C 1.46501 * 126.46889 * 180.27622 * 23 22 21
25 25 H 1.09003 * 109.47455 * 296.04140 * 1 2 3
26 26 H 1.09006 * 109.47171 * 56.04355 * 1 2 3
27 27 H 1.08999 * 109.47122 * 176.04109 * 1 2 3
28 28 H 1.08997 * 109.47012 * 183.95167 * 3 2 1
29 29 H 1.08993 * 109.47709 * 303.95676 * 3 2 1
30 30 H 1.09003 * 109.46911 * 63.95593 * 3 2 1
31 31 H 1.09002 * 109.47214 * 306.04081 * 4 2 1
32 32 H 1.09002 * 109.47267 * 186.05075 * 4 2 1
33 33 H 1.09002 * 109.46841 * 60.00113 * 5 4 2
34 34 H 1.08999 * 109.46961 * 299.99755 * 5 4 2
35 35 H 1.08993 * 109.47339 * 60.00518 * 6 5 4
36 36 H 1.08999 * 109.47269 * 299.99739 * 6 5 4
37 37 H 1.09003 * 109.47530 * 28.26966 * 8 7 6
38 38 H 1.09000 * 109.47262 * 148.26922 * 8 7 6
39 39 H 0.97006 * 120.00500 * 179.97438 * 12 11 9
40 40 H 1.07999 * 126.10664 * 0.03315 * 20 19 17
41 41 H 1.08003 * 125.42064 * 180.02562 * 22 21 20
42 42 H 1.09005 * 109.47029 * 268.97042 * 24 23 22
43 43 H 1.08991 * 109.47538 * 28.97525 * 24 23 22
44 44 H 1.09003 * 109.46699 * 148.97707 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9954 1.3714 0.0000
4 6 1.9954 -0.7660 1.1375
5 6 1.6314 -2.2426 0.9702
6 6 2.1803 -3.0405 2.1548
7 7 1.8322 -4.4546 1.9943
8 6 0.5759 -4.9669 2.5466
9 6 0.8141 -5.4827 3.9424
10 1 1.8175 -5.5207 4.3401
11 6 -0.2489 -5.9063 4.7116
12 7 -0.0410 -6.3560 5.9299
13 14 -1.9844 -5.8402 4.0238
14 1 -2.2934 -7.1197 3.3362
15 1 -2.9487 -5.6292 5.1333
16 1 -2.0908 -4.7195 3.0555
17 6 2.6680 -5.2840 1.3384
18 8 3.6663 -4.8420 0.8013
19 6 2.3770 -6.7212 1.2774
20 6 1.3900 -7.3868 1.9486
21 7 1.4681 -8.6752 1.6150
22 6 2.4518 -8.8531 0.7706
23 7 3.0426 -7.6699 0.5255
24 6 4.1794 -7.4326 -0.3677
25 1 -0.3634 0.4512 0.9233
26 1 -0.3634 0.5740 -0.8525
27 1 -0.3633 -1.0252 -0.0710
28 1 3.0827 1.3433 -0.0708
29 1 1.5897 1.9164 -0.8523
30 1 1.7043 1.8723 0.9233
31 1 1.5611 -0.3873 2.0628
32 1 3.0797 -0.6611 1.1757
33 1 2.0658 -2.6213 0.0450
34 1 0.5471 -2.3475 0.9322
35 1 1.7462 -2.6620 3.0802
36 1 3.2645 -2.9356 2.1924
37 1 -0.1617 -4.1649 2.5767
38 1 0.2062 -5.7771 1.9181
39 1 -0.7888 -6.6537 6.4712
40 1 0.6740 -6.9473 2.6273
41 1 2.7402 -9.7987 0.3357
42 1 5.1084 -7.5173 0.1962
43 1 4.1722 -8.1713 -1.1691
44 1 4.1034 -6.4326 -0.7947
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000289803418.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:42:07
Heat of formation + Delta-G solvation = 57.111887 kcal
Electronic energy + Delta-G solvation = -24533.149618 eV
Core-core repulsion = 21102.025576 eV
Total energy + Delta-G solvation = -3431.124042 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 294.180 amu
Computer time = 0.46 seconds
Orbital eigenvalues (eV)
-41.63078 -38.93325 -37.59163 -35.60324 -33.47395 -33.04562 -31.84051 -29.31055
-28.25188 -27.65082 -26.57268 -25.98829 -23.19804 -22.73395 -21.30083 -20.86850
-20.53609 -18.61423 -17.10197 -16.65442 -16.08836 -15.76512 -15.45240 -15.41635
-15.03474 -14.67920 -14.37748 -13.86237 -13.71777 -13.65672 -13.37884 -13.04709
-12.56952 -12.50870 -12.47215 -12.45930 -12.18221 -11.86557 -11.70825 -11.43844
-11.24793 -11.04376 -10.91943 -10.51160 -10.24493 -10.22868 -9.70987 -9.65166
-9.18496 -9.11495 -8.78443 -8.40654 -8.00751 -7.78025 -6.27441 -4.29952
1.96172 2.99373 3.19556 3.24478 3.28938 3.47636 3.76810 4.00857
4.09707 4.22472 4.99094 5.00970 5.02269 5.08341 5.08885 5.14268
5.27413 5.33206 5.41359 5.48713 5.58471 5.61211 5.70436 5.72851
5.73657 5.79634 5.87606 5.92832 6.07601 6.32078 6.39279 6.40390
6.53070 6.57596 6.69772 6.97538 7.00044 7.25866 7.31081 7.39915
7.65160 8.03089 8.32363 8.53267 8.78226 8.86352 9.27953 10.84077
Molecular weight = 294.18amu
Principal moments of inertia in cm(-1)
A = 0.010909 B = 0.005936 C = 0.004222
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2566.085002 B = 4715.753872 C = 6629.658518
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.021 3.979
2 N -0.549 5.549
3 C 0.025 3.975
4 C 0.059 3.941
5 C -0.130 4.130
6 C 0.127 3.873
7 N -0.576 5.576
8 C 0.186 3.814
9 C -0.545 4.545
10 H 0.082 0.918
11 C 0.082 3.918
12 N -0.877 5.877
13 Si 0.860 3.140
14 H -0.264 1.264
15 H -0.280 1.280
16 H -0.261 1.261
17 C 0.597 3.403
18 O -0.577 6.577
19 C -0.096 4.096
20 C 0.043 3.957
21 N -0.507 5.507
22 C 0.185 3.815
23 N -0.439 5.439
24 C 0.077 3.923
25 H 0.025 0.975
26 H 0.064 0.936
27 H 0.073 0.927
28 H 0.067 0.933
29 H 0.065 0.935
30 H 0.024 0.976
31 H 0.036 0.964
32 H 0.075 0.925
33 H 0.073 0.927
34 H 0.063 0.937
35 H 0.082 0.918
36 H 0.076 0.924
37 H 0.039 0.961
38 H 0.046 0.954
39 H 0.269 0.731
40 H 0.232 0.768
41 H 0.203 0.797
42 H 0.073 0.927
43 H 0.079 0.921
44 H 0.096 0.904
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.891 6.731 -11.886 13.963
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.128 4.128
2 N -0.272 5.272
3 C -0.123 4.123
4 C -0.070 4.070
5 C -0.169 4.169
6 C 0.003 3.997
7 N -0.304 5.304
8 C 0.065 3.935
9 C -0.583 4.583
10 H 0.101 0.899
11 C -0.124 4.124
12 N -0.513 5.513
13 Si 0.686 3.314
14 H -0.189 1.189
15 H -0.206 1.206
16 H -0.186 1.186
17 C 0.387 3.613
18 O -0.460 6.460
19 C -0.210 4.210
20 C -0.109 4.109
21 N -0.226 5.226
22 C -0.096 4.096
23 N -0.122 5.122
24 C -0.066 4.066
25 H 0.044 0.956
26 H 0.083 0.917
27 H 0.091 0.909
28 H 0.086 0.914
29 H 0.084 0.916
30 H 0.042 0.958
31 H 0.054 0.946
32 H 0.094 0.906
33 H 0.091 0.909
34 H 0.082 0.918
35 H 0.100 0.900
36 H 0.094 0.906
37 H 0.057 0.943
38 H 0.063 0.937
39 H 0.080 0.920
40 H 0.248 0.752
41 H 0.219 0.781
42 H 0.092 0.908
43 H 0.098 0.902
44 H 0.114 0.886
Dipole moment (debyes) X Y Z Total
from point charges 3.089 6.094 -12.224 14.004
hybrid contribution -0.592 0.849 0.335 1.088
sum 2.497 6.943 -11.889 13.992
Atomic orbital electron populations
1.22443 0.87475 1.02677 1.00156 1.61969 1.08053 1.13476 1.43743
1.22365 1.00757 0.88995 1.00218 1.22074 1.00194 0.93751 0.90952
1.21965 1.01428 0.93404 1.00111 1.21258 1.00870 0.79924 0.97615
1.47476 1.21520 1.07966 1.53436 1.20491 0.81842 0.95949 0.95204
1.21307 0.96630 1.43585 0.96775 0.89948 1.24893 0.98790 0.94134
0.94569 1.69872 1.32212 1.40603 1.08636 0.87080 0.84856 0.79908
0.79575 1.18926 1.20591 1.18581 1.16717 0.82484 0.83795 0.78346
1.90681 1.28516 1.78058 1.48748 1.20777 1.02439 0.91625 1.06165
1.25189 0.98827 0.88365 0.98497 1.70308 1.18639 1.19428 1.14183
1.25046 0.94254 0.90032 1.00294 1.45161 1.25752 1.07670 1.33624
1.22055 0.87250 1.04356 0.92908 0.95616 0.91745 0.90851 0.91407
0.91627 0.95786 0.94566 0.90632 0.90867 0.91810 0.90005 0.90603
0.94342 0.93714 0.92047 0.75247 0.78073 0.90829 0.90246 0.88570
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.23 9.32 60.07 0.56 0.79 16
2 N -0.55 -6.76 5.02 -251.26 -1.26 -8.02 16
3 C 0.03 0.25 9.57 60.06 0.57 0.82 16
4 C 0.06 0.76 4.96 -3.83 -0.02 0.74 16
5 C -0.13 -1.97 5.46 -26.73 -0.15 -2.12 16
6 C 0.13 2.21 5.36 -4.04 -0.02 2.19 16
7 N -0.58 -11.81 2.46 -176.58 -0.43 -12.24 16
8 C 0.19 4.07 3.76 -5.20 -0.02 4.05 16
9 C -0.55 -13.94 7.51 -34.44 -0.26 -14.19 16
10 H 0.08 2.39 8.06 -52.49 -0.42 1.97 16
11 C 0.08 2.15 5.22 -17.82 -0.09 2.06 16
12 N -0.88 -24.95 13.96 55.43 0.77 -24.18 16
13 Si 0.86 19.31 27.37 -169.99 -4.65 14.65 16
14 H -0.26 -5.93 7.11 56.52 0.40 -5.53 16
15 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16
16 H -0.26 -5.48 6.38 56.52 0.36 -5.12 16
17 C 0.60 12.78 7.62 -12.82 -0.10 12.68 16
18 O -0.58 -12.57 14.67 5.20 0.08 -12.50 16
19 C -0.10 -2.03 6.74 -82.15 -0.55 -2.58 16
20 C 0.04 0.96 9.27 -17.47 -0.16 0.80 16
21 N -0.51 -10.70 11.20 -14.42 -0.16 -10.86 16
22 C 0.19 3.11 12.52 -90.57 -1.13 1.97 16
23 N -0.44 -7.67 3.17 -121.97 -0.39 -8.05 16
24 C 0.08 1.01 10.58 59.85 0.63 1.64 16
25 H 0.03 0.28 8.14 -51.93 -0.42 -0.15 16
26 H 0.06 0.62 8.12 -51.93 -0.42 0.20 16
27 H 0.07 0.87 6.47 -51.93 -0.34 0.53 16
28 H 0.07 0.63 8.12 -51.93 -0.42 0.21 16
29 H 0.06 0.57 8.12 -51.93 -0.42 0.15 16
30 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16
31 H 0.04 0.45 8.12 -51.93 -0.42 0.03 16
32 H 0.08 0.94 8.06 -51.93 -0.42 0.52 16
33 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16
34 H 0.06 0.97 6.55 -51.93 -0.34 0.63 16
35 H 0.08 1.40 8.07 -51.93 -0.42 0.98 16
36 H 0.08 1.34 7.49 -51.93 -0.39 0.95 16
37 H 0.04 0.81 6.71 -51.93 -0.35 0.46 16
38 H 0.05 0.99 4.61 -51.93 -0.24 0.76 16
39 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16
40 H 0.23 5.60 2.80 -52.49 -0.15 5.45 16
41 H 0.20 2.31 8.06 -52.48 -0.42 1.88 16
42 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16
43 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16
44 H 0.10 1.40 6.75 -51.93 -0.35 1.05 16
LS Contribution 351.47 15.07 5.30 5.30
Total: -1.00 -31.42 351.47 -8.30 -39.72
By element:
Atomic # 1 Polarization: 14.13 SS G_CDS: -6.81 Total: 7.32 kcal
Atomic # 6 Polarization: 9.60 SS G_CDS: -0.74 Total: 8.86 kcal
Atomic # 7 Polarization: -61.88 SS G_CDS: -1.47 Total: -63.35 kcal
Atomic # 8 Polarization: -12.57 SS G_CDS: 0.08 Total: -12.50 kcal
Atomic # 14 Polarization: 19.31 SS G_CDS: -4.65 Total: 14.65 kcal
Total LS contribution 5.30 Total: 5.30 kcal
Total: -31.42 -8.30 -39.72 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000289803418.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 96.834 kcal
(2) G-P(sol) polarization free energy of solvation -31.424 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.410 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.298 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.722 kcal
(6) G-S(sol) free energy of system = (1) + (5) 57.112 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.46 seconds