Wall clock time and date at job start Tue Mar 31 2020 03:42:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46902 * 1
3 3 C 1.46897 * 110.99656 * 2 1
4 4 C 1.46894 * 110.99740 * 123.95719 * 2 1 3
5 5 C 1.52999 * 109.47426 * 66.04620 * 4 2 1
6 6 C 1.53002 * 109.46871 * 179.97438 * 5 4 2
7 7 N 1.46508 * 109.46689 * 180.02562 * 6 5 4
8 8 C 1.46494 * 119.99799 * 269.99853 * 7 6 5
9 9 C 1.50697 * 109.47331 * 268.26915 * 8 7 6
10 10 H 1.08000 * 119.99829 * 354.19062 * 9 8 7
11 11 C 1.37875 * 120.00244 * 174.20239 * 9 8 7
12 12 N 1.31514 * 120.00114 * 180.02562 * 11 9 8
13 13 Si 1.86801 * 119.99866 * 359.97438 * 11 9 8
14 14 H 1.48502 * 109.46862 * 90.00956 * 13 11 9
15 15 H 1.48504 * 109.46942 * 210.00186 * 13 11 9
16 16 H 1.48493 * 109.47424 * 330.00488 * 13 11 9
17 17 C 1.34778 * 119.99930 * 90.00041 * 7 6 5
18 18 O 1.21682 * 120.00139 * 354.99852 * 17 7 6
19 19 C 1.46760 * 119.99838 * 174.72126 * 17 7 6
20 20 C 1.36668 * 126.84369 * 352.36540 * 19 17 7
21 21 N 1.33324 * 107.78282 * 179.97438 * 20 19 17
22 22 C 1.30854 * 109.68713 * 0.02562 * 21 20 19
23 23 N 1.34502 * 109.16207 * 359.72221 * 22 21 20
24 24 C 1.46501 * 126.46889 * 180.27622 * 23 22 21
25 25 H 1.09003 * 109.47455 * 296.04140 * 1 2 3
26 26 H 1.09006 * 109.47171 * 56.04355 * 1 2 3
27 27 H 1.08999 * 109.47122 * 176.04109 * 1 2 3
28 28 H 1.08997 * 109.47012 * 183.95167 * 3 2 1
29 29 H 1.08993 * 109.47709 * 303.95676 * 3 2 1
30 30 H 1.09003 * 109.46911 * 63.95593 * 3 2 1
31 31 H 1.09002 * 109.47214 * 306.04081 * 4 2 1
32 32 H 1.09002 * 109.47267 * 186.05075 * 4 2 1
33 33 H 1.09002 * 109.46841 * 60.00113 * 5 4 2
34 34 H 1.08999 * 109.46961 * 299.99755 * 5 4 2
35 35 H 1.08993 * 109.47339 * 60.00518 * 6 5 4
36 36 H 1.08999 * 109.47269 * 299.99739 * 6 5 4
37 37 H 1.09003 * 109.47530 * 28.26966 * 8 7 6
38 38 H 1.09000 * 109.47262 * 148.26922 * 8 7 6
39 39 H 0.97006 * 120.00500 * 179.97438 * 12 11 9
40 40 H 1.07999 * 126.10664 * 0.03315 * 20 19 17
41 41 H 1.08003 * 125.42064 * 180.02562 * 22 21 20
42 42 H 1.09005 * 109.47029 * 268.97042 * 24 23 22
43 43 H 1.08991 * 109.47538 * 28.97525 * 24 23 22
44 44 H 1.09003 * 109.46699 * 148.97707 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9954 1.3714 0.0000
4 6 1.9954 -0.7660 1.1375
5 6 1.6314 -2.2426 0.9702
6 6 2.1803 -3.0405 2.1548
7 7 1.8322 -4.4546 1.9943
8 6 0.5759 -4.9669 2.5466
9 6 0.8141 -5.4827 3.9424
10 1 1.8175 -5.5207 4.3401
11 6 -0.2489 -5.9063 4.7116
12 7 -0.0410 -6.3560 5.9299
13 14 -1.9844 -5.8402 4.0238
14 1 -2.2934 -7.1197 3.3362
15 1 -2.9487 -5.6292 5.1333
16 1 -2.0908 -4.7195 3.0555
17 6 2.6680 -5.2840 1.3384
18 8 3.6663 -4.8420 0.8013
19 6 2.3770 -6.7212 1.2774
20 6 1.3900 -7.3868 1.9486
21 7 1.4681 -8.6752 1.6150
22 6 2.4518 -8.8531 0.7706
23 7 3.0426 -7.6699 0.5255
24 6 4.1794 -7.4326 -0.3677
25 1 -0.3634 0.4512 0.9233
26 1 -0.3634 0.5740 -0.8525
27 1 -0.3633 -1.0252 -0.0710
28 1 3.0827 1.3433 -0.0708
29 1 1.5897 1.9164 -0.8523
30 1 1.7043 1.8723 0.9233
31 1 1.5611 -0.3873 2.0628
32 1 3.0797 -0.6611 1.1757
33 1 2.0658 -2.6213 0.0450
34 1 0.5471 -2.3475 0.9322
35 1 1.7462 -2.6620 3.0802
36 1 3.2645 -2.9356 2.1924
37 1 -0.1617 -4.1649 2.5767
38 1 0.2062 -5.7771 1.9181
39 1 -0.7888 -6.6537 6.4712
40 1 0.6740 -6.9473 2.6273
41 1 2.7402 -9.7987 0.3357
42 1 5.1084 -7.5173 0.1962
43 1 4.1722 -8.1713 -1.1691
44 1 4.1034 -6.4326 -0.7947
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000289803418.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:42:06
Heat of formation + Delta-G solvation = 36.191133 kcal
Electronic energy + Delta-G solvation = -24534.056810 eV
Core-core repulsion = 21102.025576 eV
Total energy + Delta-G solvation = -3432.031234 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 294.180 amu
Computer time = 0.45 seconds
Orbital eigenvalues (eV)
-43.11823 -40.51860 -38.61874 -37.24737 -34.92876 -34.74728 -33.37506 -30.74884
-30.05980 -28.48036 -27.80746 -27.23275 -24.79417 -24.24252 -22.79820 -22.17531
-21.74100 -20.16786 -19.09615 -18.18167 -17.57806 -17.11943 -16.88715 -16.49923
-16.27031 -16.07562 -15.71967 -15.24709 -15.18415 -15.01990 -14.81215 -14.76326
-14.26552 -13.76664 -13.57941 -13.42142 -13.25828 -13.22820 -12.81040 -12.67328
-12.60479 -12.52353 -12.31325 -12.11808 -11.96618 -11.71066 -11.50006 -11.24906
-10.86396 -10.71657 -10.57066 -9.63067 -9.39694 -9.31104 -8.31689 -6.38157
0.42328 1.40154 1.43968 1.49417 1.62757 1.96378 2.32802 2.37712
2.40653 3.02281 3.05273 3.60173 3.88451 3.93902 4.01588 4.12092
4.22294 4.31583 4.38116 4.41928 4.44895 4.50767 4.60230 4.61620
4.68644 4.71738 4.72485 4.78501 4.81202 4.86784 5.00912 5.01926
5.11302 5.19905 5.26817 5.37967 5.63854 5.74266 6.05296 6.11696
6.14436 6.29875 6.48972 6.67040 7.00254 7.18046 7.26762 8.83853
Molecular weight = 294.18amu
Principal moments of inertia in cm(-1)
A = 0.010909 B = 0.005936 C = 0.004222
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2566.085002 B = 4715.753872 C = 6629.658518
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.020 3.980
2 N -0.564 5.564
3 C 0.025 3.975
4 C 0.065 3.935
5 C -0.113 4.113
6 C 0.124 3.876
7 N -0.580 5.580
8 C 0.198 3.802
9 C -0.534 4.534
10 H 0.033 0.967
11 C 0.031 3.969
12 N -0.930 5.930
13 Si 0.923 3.077
14 H -0.264 1.264
15 H -0.280 1.280
16 H -0.233 1.233
17 C 0.590 3.410
18 O -0.586 6.586
19 C -0.117 4.117
20 C 0.020 3.980
21 N -0.547 5.547
22 C 0.212 3.788
23 N -0.438 5.438
24 C 0.073 3.927
25 H 0.029 0.971
26 H 0.079 0.921
27 H 0.063 0.937
28 H 0.071 0.929
29 H 0.079 0.921
30 H 0.029 0.971
31 H 0.042 0.958
32 H 0.078 0.922
33 H 0.055 0.945
34 H 0.064 0.936
35 H 0.083 0.917
36 H 0.070 0.930
37 H 0.054 0.946
38 H 0.050 0.950
39 H 0.270 0.730
40 H 0.208 0.792
41 H 0.260 0.740
42 H 0.080 0.920
43 H 0.129 0.871
44 H 0.079 0.921
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.589 6.981 -14.333 16.152
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.128 4.128
2 N -0.289 5.289
3 C -0.123 4.123
4 C -0.064 4.064
5 C -0.152 4.152
6 C 0.002 3.998
7 N -0.308 5.308
8 C 0.076 3.924
9 C -0.572 4.572
10 H 0.051 0.949
11 C -0.170 4.170
12 N -0.568 5.568
13 Si 0.745 3.255
14 H -0.189 1.189
15 H -0.205 1.205
16 H -0.156 1.156
17 C 0.380 3.620
18 O -0.470 6.470
19 C -0.233 4.233
20 C -0.132 4.132
21 N -0.266 5.266
22 C -0.070 4.070
23 N -0.120 5.120
24 C -0.067 4.067
25 H 0.047 0.953
26 H 0.098 0.902
27 H 0.081 0.919
28 H 0.089 0.911
29 H 0.097 0.903
30 H 0.048 0.952
31 H 0.060 0.940
32 H 0.096 0.904
33 H 0.074 0.926
34 H 0.083 0.917
35 H 0.102 0.898
36 H 0.089 0.911
37 H 0.072 0.928
38 H 0.067 0.933
39 H 0.080 0.920
40 H 0.224 0.776
41 H 0.276 0.724
42 H 0.099 0.901
43 H 0.147 0.853
44 H 0.097 0.903
Dipole moment (debyes) X Y Z Total
from point charges 2.815 6.387 -14.704 16.277
hybrid contribution -0.342 0.700 1.060 1.316
sum 2.473 7.088 -13.644 15.572
Atomic orbital electron populations
1.22466 0.86869 1.02386 1.01055 1.61955 1.08788 1.14855 1.43273
1.22419 1.01021 0.87759 1.01101 1.21962 1.00478 0.92280 0.91673
1.21764 1.01031 0.94550 0.97876 1.21412 1.00752 0.78788 0.98892
1.47560 1.21091 1.09121 1.53059 1.20274 0.82783 0.96334 0.92983
1.21280 0.94343 1.43184 0.98379 0.94865 1.25681 1.03149 0.93594
0.94581 1.70020 1.33581 1.42730 1.10490 0.86085 0.79267 0.80788
0.79373 1.18877 1.20498 1.15576 1.16905 0.82463 0.84241 0.78352
1.90658 1.28737 1.78334 1.49305 1.20748 1.03199 0.91974 1.07337
1.24795 0.99495 0.89608 0.99317 1.70232 1.21199 1.18724 1.16432
1.26081 0.91801 0.91395 0.97715 1.45442 1.26235 1.07000 1.33287
1.22346 0.85820 1.05128 0.93455 0.95263 0.90193 0.91852 0.91069
0.90270 0.95248 0.93999 0.90366 0.92586 0.91722 0.89827 0.91109
0.92828 0.93265 0.92031 0.77590 0.72418 0.90136 0.85257 0.90266
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.41 9.32 127.69 1.19 1.61 16
2 N -0.56 -12.94 5.02 -948.86 -4.76 -17.70 16
3 C 0.02 0.44 9.57 127.69 1.22 1.66 16
4 C 0.06 1.59 4.96 86.30 0.43 2.02 16
5 C -0.11 -3.37 5.46 30.59 0.17 -3.20 16
6 C 0.12 4.37 5.36 86.38 0.46 4.83 16
7 N -0.58 -24.18 2.46 -830.78 -2.04 -26.22 16
8 C 0.20 8.72 3.76 85.63 0.32 9.05 16
9 C -0.53 -28.30 7.51 25.60 0.19 -28.11 16
10 H 0.03 2.05 8.06 -2.91 -0.02 2.02 16
11 C 0.03 1.66 5.22 84.65 0.44 2.11 16
12 N -0.93 -54.97 13.96 21.45 0.30 -54.68 16
13 Si 0.92 39.92 27.37 68.60 1.88 41.80 16
14 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16
15 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16
16 H -0.23 -8.92 6.38 99.48 0.63 -8.29 16
17 C 0.59 25.59 7.62 86.47 0.66 26.25 16
18 O -0.59 -25.69 14.67 -4.29 -0.06 -25.75 16
19 C -0.12 -4.96 6.74 40.01 0.27 -4.69 16
20 C 0.02 0.91 9.27 84.10 0.78 1.69 16
21 N -0.55 -22.65 11.20 -199.55 -2.24 -24.89 16
22 C 0.21 6.51 12.52 180.33 2.26 8.77 16
23 N -0.44 -14.43 3.17 -539.81 -1.71 -16.15 16
24 C 0.07 1.71 10.58 127.77 1.35 3.06 16
25 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16
26 H 0.08 1.37 8.12 -2.38 -0.02 1.35 16
27 H 0.06 1.41 6.47 -2.39 -0.02 1.39 16
28 H 0.07 1.20 8.12 -2.39 -0.02 1.18 16
29 H 0.08 1.18 8.12 -2.39 -0.02 1.16 16
30 H 0.03 0.49 8.14 -2.39 -0.02 0.47 16
31 H 0.04 0.99 8.12 -2.39 -0.02 0.97 16
32 H 0.08 1.87 8.06 -2.39 -0.02 1.86 16
33 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16
34 H 0.06 1.91 6.55 -2.39 -0.02 1.89 16
35 H 0.08 2.88 8.07 -2.39 -0.02 2.86 16
36 H 0.07 2.54 7.49 -2.39 -0.02 2.52 16
37 H 0.05 2.20 6.71 -2.39 -0.02 2.19 16
38 H 0.05 2.20 4.61 -2.39 -0.01 2.19 16
39 H 0.27 14.97 8.31 -92.70 -0.77 14.20 16
40 H 0.21 10.36 2.80 -2.91 -0.01 10.35 16
41 H 0.26 4.53 8.06 -2.91 -0.02 4.51 16
42 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16
43 H 0.13 1.72 8.14 -2.39 -0.02 1.70 16
44 H 0.08 2.17 6.75 -2.39 -0.02 2.15 16
Total: -1.00 -71.70 351.47 2.02 -69.67
By element:
Atomic # 1 Polarization: 27.97 SS G_CDS: 0.92 Total: 28.88 kcal
Atomic # 6 Polarization: 15.29 SS G_CDS: 9.75 Total: 25.03 kcal
Atomic # 7 Polarization: -129.18 SS G_CDS: -10.45 Total: -139.63 kcal
Atomic # 8 Polarization: -25.69 SS G_CDS: -0.06 Total: -25.75 kcal
Atomic # 14 Polarization: 39.92 SS G_CDS: 1.88 Total: 41.80 kcal
Total: -71.70 2.02 -69.67 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000289803418.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 105.864 kcal
(2) G-P(sol) polarization free energy of solvation -71.697 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.167 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.024 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.673 kcal
(6) G-S(sol) free energy of system = (1) + (5) 36.191 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.45 seconds