Wall clock time and date at job start Tue Mar 31 2020 03:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99745 * 2 1 4 4 H 1.48498 * 109.46762 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47025 * 299.99602 * 3 2 1 6 6 H 1.48490 * 109.47130 * 60.00093 * 3 2 1 7 7 C 1.37873 * 119.99909 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99796 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00452 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47285 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47084 * 179.97438 * 10 9 7 12 12 N 1.46896 * 109.47173 * 179.97438 * 11 10 9 13 13 C 1.46850 * 111.00218 * 293.95357 * 12 11 10 14 14 C 1.53038 * 109.52535 * 185.83476 * 13 12 11 15 15 C 1.53110 * 109.28146 * 300.82597 * 14 13 12 16 16 C 1.53120 * 109.16297 * 57.65073 * 15 14 13 17 17 O 1.42895 * 109.50326 * 62.32783 * 16 15 14 18 18 C 1.53002 * 109.50214 * 182.40568 * 16 15 14 19 19 N 1.46506 * 109.47035 * 304.99841 * 18 16 15 20 20 C 1.35316 * 125.86347 * 125.00430 * 19 18 16 21 21 C 1.35348 * 106.17123 * 179.97438 * 20 19 18 22 22 N 1.33778 * 106.50180 * 0.02562 * 21 20 19 23 23 N 1.28634 * 108.87729 * 359.73485 * 22 21 20 24 24 C 1.46850 * 111.00174 * 58.16554 * 12 11 10 25 25 H 0.96998 * 119.99961 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47292 * 59.99596 * 9 7 2 27 27 H 1.09007 * 109.47161 * 299.99900 * 9 7 2 28 28 H 1.09000 * 109.47462 * 60.00034 * 10 9 7 29 29 H 1.09002 * 109.47400 * 299.99655 * 10 9 7 30 30 H 1.08997 * 109.46955 * 60.00319 * 11 10 9 31 31 H 1.08999 * 109.47215 * 299.99768 * 11 10 9 32 32 H 1.09006 * 109.45737 * 65.82323 * 13 12 11 33 33 H 1.09001 * 109.45016 * 305.85329 * 13 12 11 34 34 H 1.08999 * 109.49890 * 180.87912 * 14 13 12 35 35 H 1.09002 * 109.49804 * 60.76647 * 14 13 12 36 36 H 1.08997 * 109.52100 * 297.74628 * 15 14 13 37 37 H 1.09001 * 109.57815 * 177.58895 * 15 14 13 38 38 H 0.96706 * 114.00276 * 60.07575 * 17 16 15 39 39 H 1.09004 * 109.46930 * 185.00071 * 18 16 15 40 40 H 1.09000 * 109.47312 * 65.00015 * 18 16 15 41 41 H 1.07993 * 126.91305 * 0.02562 * 20 19 18 42 42 H 1.08001 * 126.74863 * 179.97438 * 21 20 19 43 43 H 1.09004 * 109.46371 * 54.14239 * 24 12 11 44 44 H 1.09005 * 109.46174 * 294.18028 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 6 2.2454 -3.6620 -0.0015 11 6 1.4804 -4.9871 -0.0020 12 7 2.4350 -6.1036 -0.0024 13 6 3.2001 -6.1415 -1.2552 14 6 4.0766 -7.3957 -1.2816 15 6 5.0273 -7.3735 -0.0816 16 6 4.2067 -7.2852 1.2082 17 8 3.3817 -8.4457 1.3291 18 6 5.1506 -7.2021 2.4094 19 7 6.0760 -8.3376 2.3828 20 6 7.4267 -8.2603 2.4081 21 6 7.8781 -9.5357 2.3691 22 7 6.7957 -10.3205 2.3219 23 7 5.7439 -9.5803 2.3368 24 6 3.3266 -6.0341 1.1624 25 1 -0.4850 0.8400 -0.0004 26 1 0.6248 -2.5563 -0.8919 27 1 0.6241 -2.5575 0.8881 28 1 2.8714 -3.6047 0.8890 29 1 2.8727 -3.6039 -0.8910 30 1 0.8542 -5.0447 -0.8923 31 1 0.8534 -5.0450 0.8877 32 1 3.8318 -5.2556 -1.3218 33 1 2.5120 -6.1613 -2.1003 34 1 4.6559 -7.4154 -2.2047 35 1 3.4447 -8.2823 -1.2289 36 1 5.6856 -6.5079 -0.1545 37 1 5.6243 -8.2854 -0.0717 38 1 3.8746 -9.2770 1.3624 39 1 4.5691 -7.2288 3.3310 40 1 5.7161 -6.2714 2.3635 41 1 8.0243 -7.3618 2.4515 42 1 8.9093 -9.8566 2.3741 43 1 2.7305 -5.9759 2.0732 44 1 3.9576 -5.1488 1.0845 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330532509.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:27:19 Heat of formation + Delta-G solvation = 46.794489 kcal Electronic energy + Delta-G solvation = -24274.685290 eV Core-core repulsion = 20843.113852 eV Total energy + Delta-G solvation = -3431.571438 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.61734 -39.93147 -36.94038 -34.51206 -34.05322 -32.75379 -31.35527 -31.01981 -30.62309 -27.20089 -26.69002 -24.47419 -23.08491 -22.76124 -22.35998 -21.32821 -20.73248 -19.24336 -17.81561 -17.24140 -16.54205 -16.16943 -15.67075 -15.24238 -15.14586 -14.71247 -14.60789 -14.43785 -14.08389 -14.01139 -13.71550 -13.26076 -12.61909 -12.36440 -12.33458 -12.26628 -12.04321 -11.78039 -11.28006 -11.19019 -11.09589 -10.98609 -10.86883 -10.76234 -10.73120 -10.62321 -10.33689 -9.87931 -9.72090 -9.70052 -9.50645 -9.21697 -8.40561 -7.87893 -6.05013 -4.08100 1.26930 1.96206 2.27333 3.25653 3.33389 3.36324 3.70201 3.98189 4.19481 4.31605 4.36991 4.40618 4.45206 4.70952 4.74503 4.88379 4.90245 5.08850 5.13117 5.30423 5.36203 5.40850 5.50066 5.56390 5.63719 5.65289 5.76380 5.82291 5.89211 5.95838 6.04692 6.20286 6.22502 6.28560 6.52331 6.72674 6.96902 7.28701 7.37176 7.61137 7.64486 7.75775 7.94269 8.19137 8.36877 8.99079 9.56288 11.05993 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.024425 B = 0.003100 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.099443 B = 9030.085204 C = 9583.859912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.890 3.110 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.053 0.947 9 C 0.024 3.976 10 C -0.145 4.145 11 C 0.053 3.947 12 N -0.524 5.524 13 C 0.051 3.949 14 C -0.109 4.109 15 C -0.146 4.146 16 C 0.133 3.867 17 O -0.532 6.532 18 C 0.080 3.920 19 N -0.283 5.283 20 C -0.046 4.046 21 C -0.054 4.054 22 N -0.268 5.268 23 N -0.092 5.092 24 C 0.071 3.929 25 H 0.260 0.740 26 H 0.016 0.984 27 H 0.016 0.984 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.038 0.962 33 H 0.076 0.924 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.059 0.941 38 H 0.377 0.623 39 H 0.113 0.887 40 H 0.117 0.883 41 H 0.191 0.809 42 H 0.190 0.810 43 H 0.085 0.915 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.709 -16.006 3.082 21.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.718 3.282 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.071 0.929 9 C -0.013 4.013 10 C -0.184 4.184 11 C -0.074 4.074 12 N -0.247 5.247 13 C -0.077 4.077 14 C -0.147 4.147 15 C -0.184 4.184 16 C 0.090 3.910 17 O -0.339 6.339 18 C -0.042 4.042 19 N -0.077 5.077 20 C -0.198 4.198 21 C -0.211 4.211 22 N -0.134 5.134 23 N -0.073 5.073 24 C -0.058 4.058 25 H 0.070 0.930 26 H 0.034 0.966 27 H 0.035 0.965 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.056 0.944 33 H 0.095 0.905 34 H 0.083 0.917 35 H 0.095 0.905 36 H 0.088 0.912 37 H 0.078 0.922 38 H 0.227 0.773 39 H 0.131 0.869 40 H 0.135 0.865 41 H 0.208 0.792 42 H 0.207 0.793 43 H 0.104 0.896 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 12.607 -16.889 3.047 21.295 hybrid contribution 2.393 2.386 0.072 3.380 sum 15.000 -14.503 3.118 21.097 Atomic orbital electron populations 1.69970 1.06032 1.26526 1.50793 1.25030 0.94841 0.99242 0.95339 0.86566 0.80030 0.83921 0.77657 1.19849 1.20971 1.20968 1.21272 0.92891 0.91182 1.50607 0.92913 1.19020 0.93864 0.91172 0.97274 1.22247 1.00047 0.96058 1.00047 1.22368 0.94440 0.87858 1.02753 1.62092 1.17117 1.44546 1.00925 1.22114 0.96241 0.96408 0.92926 1.21472 0.97204 0.99604 0.96411 1.22261 0.98230 1.02057 0.95887 1.21454 0.89566 0.89222 0.90762 1.86686 1.35799 1.15518 1.95884 1.23146 0.92153 0.85622 1.03274 1.47483 1.06584 1.07544 1.46052 1.23768 0.84334 1.02027 1.09634 1.23639 1.00288 0.89609 1.07587 1.75134 0.95525 1.26517 1.16245 1.77998 1.22061 0.86981 1.20250 1.21932 0.95129 0.92555 0.96203 0.93002 0.96576 0.96547 0.93441 0.93393 0.90840 0.90842 0.94363 0.90526 0.91700 0.90499 0.91244 0.92180 0.77310 0.86897 0.86508 0.79221 0.79332 0.89639 0.92533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.60 13.29 55.43 0.74 -25.86 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 7 C -0.52 -14.47 9.11 -34.44 -0.31 -14.78 16 8 H 0.05 1.42 7.74 -52.48 -0.41 1.02 16 9 C 0.02 0.61 4.97 -27.89 -0.14 0.47 16 10 C -0.15 -2.81 4.45 -26.73 -0.12 -2.93 16 11 C 0.05 0.88 5.36 -3.82 -0.02 0.86 16 12 N -0.52 -7.62 4.74 -234.66 -1.11 -8.74 16 13 C 0.05 0.68 5.05 -3.83 -0.02 0.66 16 14 C -0.11 -1.24 5.94 -26.65 -0.16 -1.40 16 15 C -0.15 -1.50 4.73 -26.61 -0.13 -1.63 16 16 C 0.13 1.41 0.79 -90.54 -0.07 1.34 16 17 O -0.53 -6.92 12.29 -35.23 -0.43 -7.35 16 18 C 0.08 0.64 5.67 -4.04 -0.02 0.62 16 19 N -0.28 -2.55 2.52 -61.26 -0.15 -2.71 16 20 C -0.05 -0.33 11.57 -17.05 -0.20 -0.52 16 21 C -0.05 -0.44 12.05 -17.73 -0.21 -0.66 16 22 N -0.27 -3.16 12.41 30.24 0.38 -2.79 16 23 N -0.09 -1.07 10.69 60.35 0.65 -0.43 16 24 C 0.07 0.89 3.81 -3.83 -0.01 0.87 16 25 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.02 0.43 8.14 -51.92 -0.42 0.01 16 28 H 0.05 0.89 6.51 -51.93 -0.34 0.55 16 29 H 0.05 0.93 6.68 -51.93 -0.35 0.58 16 30 H 0.07 1.24 8.06 -51.93 -0.42 0.83 16 31 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.04 0.53 6.75 -51.93 -0.35 0.18 16 33 H 0.08 1.02 8.06 -51.93 -0.42 0.60 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.97 7.80 -51.93 -0.40 0.56 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.64 7.54 -51.93 -0.39 0.25 16 38 H 0.38 4.63 6.58 45.56 0.30 4.93 16 39 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.12 0.63 8.07 -51.93 -0.42 0.21 16 41 H 0.19 0.63 8.06 -52.49 -0.42 0.21 16 42 H 0.19 0.92 8.06 -52.49 -0.42 0.50 16 43 H 0.09 1.09 8.12 -51.93 -0.42 0.66 16 44 H 0.06 0.69 6.61 -51.93 -0.34 0.35 16 LS Contribution 347.56 15.07 5.24 5.24 Total: -1.00 -32.72 347.56 -7.72 -40.44 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -6.48 Total: 1.52 kcal Atomic # 6 Polarization: -14.08 SS G_CDS: -1.51 Total: -15.59 kcal Atomic # 7 Polarization: -41.01 SS G_CDS: 0.49 Total: -40.52 kcal Atomic # 8 Polarization: -6.92 SS G_CDS: -0.43 Total: -7.35 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.72 -7.72 -40.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330532509.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.233 kcal (2) G-P(sol) polarization free energy of solvation -32.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds