Wall clock time and date at job start Tue Mar 31 2020 03:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99745 * 2 1 4 4 H 1.48498 * 109.46762 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47025 * 299.99602 * 3 2 1 6 6 H 1.48490 * 109.47130 * 60.00093 * 3 2 1 7 7 C 1.37873 * 119.99909 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99796 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00452 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47285 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47084 * 179.97438 * 10 9 7 12 12 N 1.46896 * 109.47173 * 179.97438 * 11 10 9 13 13 C 1.46850 * 111.00218 * 293.95357 * 12 11 10 14 14 C 1.53038 * 109.52535 * 185.83476 * 13 12 11 15 15 C 1.53110 * 109.28146 * 300.82597 * 14 13 12 16 16 C 1.53120 * 109.16297 * 57.65073 * 15 14 13 17 17 O 1.42895 * 109.50326 * 62.32783 * 16 15 14 18 18 C 1.53002 * 109.50214 * 182.40568 * 16 15 14 19 19 N 1.46506 * 109.47035 * 304.99841 * 18 16 15 20 20 C 1.35316 * 125.86347 * 125.00430 * 19 18 16 21 21 C 1.35348 * 106.17123 * 179.97438 * 20 19 18 22 22 N 1.33778 * 106.50180 * 0.02562 * 21 20 19 23 23 N 1.28634 * 108.87729 * 359.73485 * 22 21 20 24 24 C 1.46850 * 111.00174 * 58.16554 * 12 11 10 25 25 H 0.96998 * 119.99961 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47292 * 59.99596 * 9 7 2 27 27 H 1.09007 * 109.47161 * 299.99900 * 9 7 2 28 28 H 1.09000 * 109.47462 * 60.00034 * 10 9 7 29 29 H 1.09002 * 109.47400 * 299.99655 * 10 9 7 30 30 H 1.08997 * 109.46955 * 60.00319 * 11 10 9 31 31 H 1.08999 * 109.47215 * 299.99768 * 11 10 9 32 32 H 1.09006 * 109.45737 * 65.82323 * 13 12 11 33 33 H 1.09001 * 109.45016 * 305.85329 * 13 12 11 34 34 H 1.08999 * 109.49890 * 180.87912 * 14 13 12 35 35 H 1.09002 * 109.49804 * 60.76647 * 14 13 12 36 36 H 1.08997 * 109.52100 * 297.74628 * 15 14 13 37 37 H 1.09001 * 109.57815 * 177.58895 * 15 14 13 38 38 H 0.96706 * 114.00276 * 60.07575 * 17 16 15 39 39 H 1.09004 * 109.46930 * 185.00071 * 18 16 15 40 40 H 1.09000 * 109.47312 * 65.00015 * 18 16 15 41 41 H 1.07993 * 126.91305 * 0.02562 * 20 19 18 42 42 H 1.08001 * 126.74863 * 179.97438 * 21 20 19 43 43 H 1.09004 * 109.46371 * 54.14239 * 24 12 11 44 44 H 1.09005 * 109.46174 * 294.18028 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 6 2.2454 -3.6620 -0.0015 11 6 1.4804 -4.9871 -0.0020 12 7 2.4350 -6.1036 -0.0024 13 6 3.2001 -6.1415 -1.2552 14 6 4.0766 -7.3957 -1.2816 15 6 5.0273 -7.3735 -0.0816 16 6 4.2067 -7.2852 1.2082 17 8 3.3817 -8.4457 1.3291 18 6 5.1506 -7.2021 2.4094 19 7 6.0760 -8.3376 2.3828 20 6 7.4267 -8.2603 2.4081 21 6 7.8781 -9.5357 2.3691 22 7 6.7957 -10.3205 2.3219 23 7 5.7439 -9.5803 2.3368 24 6 3.3266 -6.0341 1.1624 25 1 -0.4850 0.8400 -0.0004 26 1 0.6248 -2.5563 -0.8919 27 1 0.6241 -2.5575 0.8881 28 1 2.8714 -3.6047 0.8890 29 1 2.8727 -3.6039 -0.8910 30 1 0.8542 -5.0447 -0.8923 31 1 0.8534 -5.0450 0.8877 32 1 3.8318 -5.2556 -1.3218 33 1 2.5120 -6.1613 -2.1003 34 1 4.6559 -7.4154 -2.2047 35 1 3.4447 -8.2823 -1.2289 36 1 5.6856 -6.5079 -0.1545 37 1 5.6243 -8.2854 -0.0717 38 1 3.8746 -9.2770 1.3624 39 1 4.5691 -7.2288 3.3310 40 1 5.7161 -6.2714 2.3635 41 1 8.0243 -7.3618 2.4515 42 1 8.9093 -9.8566 2.3741 43 1 2.7305 -5.9759 2.0732 44 1 3.9576 -5.1488 1.0845 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330532509.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:27:18 Heat of formation + Delta-G solvation = 22.973589 kcal Electronic energy + Delta-G solvation = -24275.718242 eV Core-core repulsion = 20843.113852 eV Total energy + Delta-G solvation = -3432.604389 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -44.25762 -40.90314 -38.04972 -35.74008 -35.22711 -34.27427 -32.30041 -31.97950 -31.81292 -28.43219 -27.87867 -25.95964 -23.83773 -23.71813 -23.47041 -22.53982 -21.87422 -20.38461 -18.59047 -18.37835 -17.98681 -17.26769 -16.59773 -16.42123 -16.32888 -15.84759 -15.58660 -15.49612 -15.15864 -14.97767 -14.78956 -14.49845 -13.99774 -13.68976 -13.51159 -13.33287 -13.20546 -12.93044 -12.67263 -12.64458 -12.46609 -12.34335 -12.08559 -11.92266 -11.86719 -11.57865 -11.43933 -11.37008 -11.28934 -11.15297 -10.68067 -10.56372 -10.32525 -9.11167 -8.19740 -6.31930 0.66276 1.37136 1.39340 1.39757 1.52406 1.64723 2.39949 2.83867 3.11541 3.12894 3.41087 3.62629 3.63011 3.70417 3.94661 4.07356 4.12273 4.25642 4.29615 4.33472 4.35186 4.37749 4.49503 4.58492 4.59469 4.68033 4.71191 4.83952 4.87631 4.88180 5.01052 5.05667 5.18814 5.22807 5.28785 5.33936 5.50425 5.63404 5.71470 5.84557 6.09879 6.19651 6.25139 6.74995 6.85831 7.37778 7.53270 8.91410 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.024425 B = 0.003100 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.099443 B = 9030.085204 C = 9583.859912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.964 3.036 4 H -0.259 1.259 5 H -0.280 1.280 6 H -0.279 1.279 7 C -0.540 4.540 8 H 0.060 0.940 9 C 0.027 3.973 10 C -0.125 4.125 11 C 0.064 3.936 12 N -0.531 5.531 13 C 0.050 3.950 14 C -0.104 4.104 15 C -0.139 4.139 16 C 0.135 3.865 17 O -0.554 6.554 18 C 0.082 3.918 19 N -0.284 5.284 20 C -0.031 4.031 21 C -0.064 4.064 22 N -0.307 5.307 23 N -0.130 5.130 24 C 0.067 3.933 25 H 0.263 0.737 26 H -0.012 1.012 27 H -0.009 1.009 28 H 0.057 0.943 29 H 0.050 0.950 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.038 0.962 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.060 0.940 36 H 0.086 0.914 37 H 0.057 0.943 38 H 0.378 0.622 39 H 0.114 0.886 40 H 0.152 0.848 41 H 0.233 0.767 42 H 0.217 0.783 43 H 0.080 0.920 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.686 -15.123 3.406 23.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.788 3.212 4 H -0.183 1.183 5 H -0.206 1.206 6 H -0.204 1.204 7 C -0.578 4.578 8 H 0.078 0.922 9 C -0.011 4.011 10 C -0.164 4.164 11 C -0.063 4.063 12 N -0.254 5.254 13 C -0.078 4.078 14 C -0.142 4.142 15 C -0.177 4.177 16 C 0.092 3.908 17 O -0.361 6.361 18 C -0.039 4.039 19 N -0.077 5.077 20 C -0.183 4.183 21 C -0.222 4.222 22 N -0.172 5.172 23 N -0.109 5.109 24 C -0.062 4.062 25 H 0.072 0.928 26 H 0.007 0.993 27 H 0.010 0.990 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.056 0.944 33 H 0.089 0.911 34 H 0.099 0.901 35 H 0.079 0.921 36 H 0.105 0.895 37 H 0.076 0.924 38 H 0.229 0.771 39 H 0.132 0.868 40 H 0.170 0.830 41 H 0.249 0.751 42 H 0.233 0.767 43 H 0.099 0.901 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 15.590 -16.038 3.372 22.619 hybrid contribution 1.466 2.098 -0.037 2.560 sum 17.057 -13.940 3.334 22.279 Atomic orbital electron populations 1.70108 1.07865 1.27680 1.51814 1.25996 0.95733 1.03413 0.94831 0.85417 0.79190 0.78851 0.77706 1.18326 1.20615 1.20428 1.21724 0.93479 0.92362 1.50253 0.92154 1.18930 0.94378 0.93087 0.94705 1.22009 0.98812 0.95049 1.00552 1.22131 0.94672 0.87405 1.02133 1.62091 1.18003 1.42909 1.02357 1.22159 0.96200 0.97319 0.92076 1.21422 0.97083 0.97751 0.97961 1.22200 0.97924 1.02655 0.94925 1.21431 0.89462 0.87521 0.92370 1.86648 1.37082 1.16285 1.96117 1.23161 0.92272 0.86645 1.01819 1.47569 1.07525 1.07001 1.45635 1.24452 0.83557 1.03103 1.07169 1.24236 1.00853 0.89959 1.07183 1.75085 0.96727 1.27956 1.17411 1.77967 1.22520 0.88118 1.22319 1.22016 0.95147 0.94020 0.95006 0.92821 0.99335 0.99028 0.92403 0.93152 0.91612 0.91436 0.94427 0.91149 0.90075 0.92084 0.89508 0.92381 0.77133 0.86752 0.83044 0.75104 0.76679 0.90114 0.91572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.43 13.29 21.45 0.28 -56.15 16 2 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 3 Si 0.96 43.21 29.54 68.60 2.03 45.23 16 4 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 5 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 6 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 7 C -0.54 -29.94 9.11 25.60 0.23 -29.71 16 8 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 9 C 0.03 1.37 4.97 29.85 0.15 1.52 16 10 C -0.13 -4.80 4.45 30.59 0.14 -4.66 16 11 C 0.06 2.16 5.36 86.31 0.46 2.63 16 12 N -0.53 -15.09 4.74 -896.34 -4.25 -19.34 16 13 C 0.05 1.28 5.05 86.33 0.44 1.71 16 14 C -0.10 -2.22 5.94 30.64 0.18 -2.04 16 15 C -0.14 -2.53 4.73 30.67 0.14 -2.39 16 16 C 0.13 2.62 0.79 -10.74 -0.01 2.61 16 17 O -0.55 -14.21 12.29 -148.98 -1.83 -16.04 16 18 C 0.08 1.10 5.67 86.38 0.49 1.59 16 19 N -0.28 -4.45 2.52 -347.72 -0.87 -5.33 16 20 C -0.03 -0.33 11.57 83.49 0.97 0.63 16 21 C -0.06 -0.91 12.05 83.73 1.01 0.10 16 22 N -0.31 -6.99 12.41 -58.25 -0.72 -7.72 16 23 N -0.13 -2.91 10.69 37.02 0.40 -2.52 16 24 C 0.07 1.56 3.81 86.32 0.33 1.89 16 25 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 26 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 27 H -0.01 -0.48 8.14 -2.38 -0.02 -0.50 16 28 H 0.06 2.09 6.51 -2.39 -0.02 2.07 16 29 H 0.05 1.90 6.68 -2.39 -0.02 1.89 16 30 H 0.07 2.28 8.06 -2.39 -0.02 2.26 16 31 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 32 H 0.04 0.97 6.75 -2.38 -0.02 0.95 16 33 H 0.07 1.85 8.06 -2.39 -0.02 1.83 16 34 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.06 1.50 7.80 -2.39 -0.02 1.49 16 36 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.06 1.12 7.54 -2.39 -0.02 1.10 16 38 H 0.38 9.39 6.58 -74.05 -0.49 8.90 16 39 H 0.11 1.52 8.14 -2.38 -0.02 1.50 16 40 H 0.15 0.95 8.07 -2.39 -0.02 0.93 16 41 H 0.23 0.28 8.06 -2.91 -0.02 0.25 16 42 H 0.22 1.51 8.06 -2.91 -0.02 1.49 16 43 H 0.08 1.97 8.12 -2.39 -0.02 1.95 16 44 H 0.07 1.44 6.61 -2.38 -0.02 1.42 16 Total: -1.00 -72.35 347.56 0.52 -71.83 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: 0.50 Total: 15.81 kcal Atomic # 6 Polarization: -30.77 SS G_CDS: 4.99 Total: -25.78 kcal Atomic # 7 Polarization: -85.88 SS G_CDS: -5.17 Total: -91.05 kcal Atomic # 8 Polarization: -14.21 SS G_CDS: -1.83 Total: -16.04 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.23 kcal Total: -72.35 0.52 -71.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330532509.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.802 kcal (2) G-P(sol) polarization free energy of solvation -72.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds