Wall clock time and date at job start Tue Mar 31 2020 03:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46496 * 119.99913 * 2 1 4 4 C 1.34776 * 120.00041 * 179.97438 * 2 1 3 5 5 O 1.21286 * 120.00022 * 4.98559 * 4 2 1 6 6 C 1.50703 * 119.99979 * 184.98081 * 4 2 1 7 7 H 1.08997 * 109.50613 * 327.18339 * 6 4 2 8 8 C 1.53046 * 109.48868 * 87.24182 * 6 4 2 9 9 N 1.46954 * 109.36610 * 178.36580 * 8 6 4 10 10 C 1.46900 * 111.00111 * 176.80939 * 9 8 6 11 11 C 1.53000 * 109.46878 * 57.75675 * 10 9 8 12 12 C 1.47204 * 109.47053 * 179.97438 * 11 10 9 13 13 N 8.15160 * 124.35181 * 108.45026 * 2 1 3 14 14 C 1.46959 * 110.88282 * 300.68298 * 9 8 6 15 15 C 1.53046 * 109.36525 * 59.31651 * 14 9 8 16 16 N 1.46958 * 109.48687 * 207.13221 * 6 4 2 17 17 C 1.46900 * 111.00265 * 56.84477 * 16 6 4 18 18 C 1.50700 * 109.47390 * 199.43845 * 17 16 6 19 19 H 1.08000 * 119.99564 * 359.97438 * 18 17 16 20 20 C 1.37875 * 119.99867 * 180.27716 * 18 17 16 21 21 N 1.31516 * 119.99848 * 179.72497 * 20 18 17 22 22 Si 1.86798 * 120.00307 * 359.72191 * 20 18 17 23 23 H 1.48503 * 109.47074 * 89.99995 * 22 20 18 24 24 H 1.48492 * 109.47216 * 210.00321 * 22 20 18 25 25 H 1.48498 * 109.47220 * 330.00513 * 22 20 18 26 26 H 1.08998 * 109.46976 * 270.00256 * 1 2 3 27 27 H 1.08994 * 109.47184 * 30.00405 * 1 2 3 28 28 H 1.09000 * 109.47092 * 150.00484 * 1 2 3 29 29 H 1.09000 * 109.47067 * 264.83796 * 3 2 1 30 30 H 1.09001 * 109.47454 * 24.84161 * 3 2 1 31 31 H 1.08999 * 109.47447 * 144.84321 * 3 2 1 32 32 H 1.09006 * 109.48955 * 58.40169 * 8 6 4 33 33 H 1.09003 * 109.50968 * 298.34583 * 8 6 4 34 34 H 1.09000 * 109.47085 * 177.75958 * 10 9 8 35 35 H 1.09002 * 109.47273 * 297.75703 * 10 9 8 36 36 H 1.08992 * 109.47186 * 300.00031 * 11 10 9 37 37 H 1.09002 * 109.47146 * 59.99950 * 11 10 9 38 38 H 1.09005 * 109.48230 * 299.34971 * 14 9 8 39 39 H 1.08992 * 109.50401 * 179.29691 * 14 9 8 40 40 H 1.08997 * 109.49052 * 181.63355 * 15 14 9 41 41 H 1.09001 * 109.50675 * 61.57980 * 15 14 9 42 42 H 1.09005 * 109.46755 * 79.43802 * 17 16 6 43 43 H 1.08995 * 109.47228 * 319.44296 * 17 16 6 44 44 H 0.96999 * 119.99930 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1389 -1.1672 0.0005 5 8 1.5359 -2.2156 -0.0903 6 6 3.6417 -1.1696 0.1138 7 1 4.0450 -0.2836 -0.3764 8 6 4.0423 -1.1630 1.5909 9 7 5.5073 -1.2048 1.6986 10 6 5.9346 -1.1236 3.1017 11 6 5.3062 -2.2720 3.8935 12 6 5.7348 -2.1910 5.2994 13 7 6.0647 -2.1299 6.3839 14 6 6.0458 -2.4102 1.0530 15 6 5.6451 -2.4169 -0.4240 16 7 4.1800 -2.3750 -0.5317 17 6 3.7528 -2.4563 -1.9348 18 6 3.8975 -3.8748 -2.4227 19 1 4.2701 -4.6393 -1.7571 20 6 3.5602 -4.1952 -3.7206 21 7 3.6916 -5.4320 -4.1480 22 14 2.9165 -2.8726 -4.8720 23 1 4.0550 -2.2415 -5.5867 24 1 1.9900 -3.4835 -5.8588 25 1 2.1927 -1.8414 -4.0860 26 1 -0.3633 0.0000 1.0277 27 1 -0.3633 0.8899 -0.5139 28 1 -0.3633 -0.8900 -0.5138 29 1 2.4592 1.5371 -1.0235 30 1 1.5715 2.0497 0.4317 31 1 3.1068 1.1633 0.5917 32 1 3.6162 -2.0349 2.0873 33 1 3.6686 -0.2556 2.0654 34 1 7.0208 -1.1967 3.1556 35 1 5.6131 -0.1719 3.5249 36 1 4.2200 -2.1989 3.8396 37 1 5.6276 -3.2237 3.4704 38 1 5.6424 -3.2963 1.5433 39 1 7.1326 -2.4123 1.1351 40 1 6.0188 -3.3244 -0.8981 41 1 6.0713 -1.5452 -0.9207 42 1 4.3737 -1.7979 -2.5424 43 1 2.7102 -2.1489 -2.0156 44 1 3.4540 -5.6575 -5.0610 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331026001.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:42:36 Heat of formation + Delta-G solvation = -1.034898 kcal Electronic energy + Delta-G solvation = -24901.625540 eV Core-core repulsion = 21467.980064 eV Total energy + Delta-G solvation = -3433.645476 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.52632 -39.70699 -37.92646 -36.84618 -36.35065 -34.65107 -32.45562 -32.20215 -29.91095 -28.89426 -27.34353 -26.87531 -24.77142 -24.06077 -22.79977 -20.91882 -20.02830 -18.95545 -18.48642 -18.09428 -17.34521 -17.01825 -16.56195 -16.14687 -16.11836 -15.66520 -15.40542 -15.34947 -14.98965 -14.79053 -14.54178 -14.21730 -13.97410 -13.82457 -13.60277 -13.43189 -13.34341 -13.27666 -13.19605 -12.84880 -12.80770 -12.72696 -12.56897 -12.33651 -12.10649 -11.83598 -11.70887 -11.50908 -11.39565 -10.76418 -10.61002 -9.59961 -9.34465 -8.97294 -8.26332 -6.26546 1.28095 1.32478 1.41728 1.63448 1.78399 1.81907 2.05314 2.33591 2.80120 3.05962 3.13536 3.22021 3.68083 3.87158 4.06303 4.12345 4.18018 4.24863 4.37210 4.39438 4.47077 4.51630 4.53829 4.61119 4.67750 4.79087 4.81126 4.83228 4.93799 4.95311 5.01425 5.02699 5.12292 5.16930 5.22447 5.59385 5.61981 5.89721 5.96714 6.09609 6.29563 6.46075 6.60734 6.64227 6.77524 7.30039 7.35043 8.90840 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.014086 B = 0.005246 C = 0.004214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.336758 B = 5335.997169 C = 6643.479678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.628 5.628 3 C 0.070 3.930 4 C 0.508 3.492 5 O -0.560 6.560 6 C 0.069 3.931 7 H 0.074 0.926 8 C 0.071 3.929 9 N -0.524 5.524 10 C 0.068 3.932 11 C -0.068 4.068 12 C 0.244 3.756 13 N -0.497 5.497 14 C 0.057 3.943 15 C 0.065 3.935 16 N -0.528 5.528 17 C 0.179 3.821 18 C -0.500 4.500 19 H 0.038 0.962 20 C 0.007 3.993 21 N -0.948 5.948 22 Si 0.942 3.058 23 H -0.258 1.258 24 H -0.282 1.282 25 H -0.264 1.264 26 H 0.069 0.931 27 H 0.097 0.903 28 H 0.042 0.958 29 H 0.053 0.947 30 H 0.105 0.895 31 H 0.087 0.913 32 H 0.046 0.954 33 H 0.114 0.886 34 H 0.101 0.899 35 H 0.105 0.895 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.046 0.954 39 H 0.109 0.891 40 H 0.063 0.937 41 H 0.038 0.962 42 H -0.013 1.013 43 H 0.015 0.985 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.874 18.661 12.247 22.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.363 5.363 3 C -0.071 4.071 4 C 0.295 3.705 5 O -0.437 6.437 6 C -0.043 4.043 7 H 0.092 0.908 8 C -0.058 4.058 9 N -0.246 5.246 10 C -0.061 4.061 11 C -0.109 4.109 12 C -0.073 4.073 13 N -0.175 5.175 14 C -0.070 4.070 15 C -0.063 4.063 16 N -0.254 5.254 17 C 0.052 3.948 18 C -0.538 4.538 19 H 0.056 0.944 20 C -0.190 4.190 21 N -0.590 5.590 22 Si 0.766 3.234 23 H -0.182 1.182 24 H -0.207 1.207 25 H -0.189 1.189 26 H 0.088 0.912 27 H 0.116 0.884 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.124 0.876 31 H 0.106 0.894 32 H 0.065 0.935 33 H 0.132 0.868 34 H 0.119 0.881 35 H 0.123 0.877 36 H 0.137 0.863 37 H 0.136 0.864 38 H 0.065 0.935 39 H 0.127 0.873 40 H 0.081 0.919 41 H 0.057 0.943 42 H 0.004 0.996 43 H 0.033 0.967 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.022 18.113 13.655 22.706 hybrid contribution -0.720 -0.455 -1.516 1.739 sum 0.301 17.658 12.139 21.430 Atomic orbital electron populations 1.21719 0.78700 1.02980 1.02549 1.47962 1.07731 1.06739 1.73855 1.22128 0.98315 0.84031 1.02638 1.20914 0.90509 0.83425 0.75675 1.90743 1.70712 1.33223 1.49012 1.21738 0.90337 0.93812 0.98451 0.90805 1.22092 0.88822 1.02962 0.91899 1.62428 1.08717 1.38652 1.14840 1.22281 1.01790 0.97391 0.84665 1.20292 1.04093 1.04543 0.81989 1.29310 0.91715 0.91461 0.94809 1.81236 1.11229 1.10724 1.14348 1.22290 1.01062 0.91312 0.92384 1.22099 0.86151 1.00714 0.97318 1.61788 1.10633 1.36287 1.16680 1.19851 0.94376 0.95226 0.85310 1.21172 1.42013 0.94341 0.96314 0.94401 1.25767 0.95817 0.97540 0.99851 1.70043 1.50968 1.20041 1.17910 0.85794 0.79192 0.79644 0.78764 1.18241 1.20736 1.18903 0.91202 0.88401 0.93890 0.92793 0.87602 0.89438 0.93532 0.86751 0.88074 0.87707 0.86300 0.86421 0.93536 0.87316 0.91878 0.94350 0.99580 0.96712 0.92589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.77 10.45 127.77 1.34 3.11 16 2 N -0.63 -15.42 3.27 -871.90 -2.85 -18.27 16 3 C 0.07 1.01 9.81 127.77 1.25 2.26 16 4 C 0.51 17.41 5.54 87.66 0.49 17.90 16 5 O -0.56 -25.86 15.08 -3.05 -0.05 -25.91 16 6 C 0.07 2.08 1.53 44.17 0.07 2.15 16 7 H 0.07 2.01 6.67 -2.39 -0.02 1.99 16 8 C 0.07 1.46 4.19 86.31 0.36 1.82 16 9 N -0.52 -9.12 4.92 -895.72 -4.40 -13.52 16 10 C 0.07 0.73 5.33 86.30 0.46 1.19 16 11 C -0.07 -0.81 4.99 28.79 0.14 -0.66 16 12 C 0.24 4.25 15.43 89.45 1.38 5.63 16 13 N -0.50 -12.06 18.53 20.00 0.37 -11.69 16 14 C 0.06 1.28 5.27 86.31 0.45 1.73 16 15 C 0.07 2.17 5.43 86.31 0.47 2.64 16 16 N -0.53 -21.24 4.19 -879.42 -3.68 -24.92 16 17 C 0.18 8.90 3.44 85.56 0.29 9.20 16 18 C -0.50 -29.99 9.20 25.60 0.24 -29.76 16 19 H 0.04 2.52 7.98 -2.91 -0.02 2.50 16 20 C 0.01 0.42 5.47 84.65 0.46 0.88 16 21 N -0.95 -60.97 13.96 21.45 0.30 -60.67 16 22 Si 0.94 46.06 27.46 68.60 1.88 47.94 16 23 H -0.26 -11.69 7.11 99.48 0.71 -10.99 16 24 H -0.28 -13.50 7.11 99.48 0.71 -12.80 16 25 H -0.26 -12.57 6.55 99.48 0.65 -11.92 16 26 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.10 1.43 8.07 -2.39 -0.02 1.41 16 28 H 0.04 1.23 7.36 -2.39 -0.02 1.21 16 29 H 0.05 0.81 8.14 -2.39 -0.02 0.80 16 30 H 0.11 0.82 8.03 -2.39 -0.02 0.80 16 31 H 0.09 1.03 5.71 -2.39 -0.01 1.01 16 32 H 0.05 1.09 6.45 -2.38 -0.02 1.07 16 33 H 0.11 1.58 7.29 -2.39 -0.02 1.57 16 34 H 0.10 0.91 8.10 -2.39 -0.02 0.89 16 35 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.12 1.35 6.44 -2.39 -0.02 1.33 16 37 H 0.12 1.42 6.62 -2.39 -0.02 1.41 16 38 H 0.05 1.09 6.63 -2.38 -0.02 1.08 16 39 H 0.11 1.86 8.11 -2.39 -0.02 1.84 16 40 H 0.06 2.49 7.51 -2.39 -0.02 2.48 16 41 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 42 H -0.01 -0.64 7.42 -2.38 -0.02 -0.66 16 43 H 0.01 0.79 4.93 -2.39 -0.01 0.78 16 44 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 Total: -1.00 -84.74 348.45 -0.08 -84.82 By element: Atomic # 1 Polarization: 3.19 SS G_CDS: 0.94 Total: 4.13 kcal Atomic # 6 Polarization: 10.69 SS G_CDS: 7.40 Total: 18.09 kcal Atomic # 7 Polarization: -118.81 SS G_CDS: -10.27 Total: -129.08 kcal Atomic # 8 Polarization: -25.86 SS G_CDS: -0.05 Total: -25.91 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 1.88 Total: 47.94 kcal Total: -84.74 -0.08 -84.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331026001.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.789 kcal (2) G-P(sol) polarization free energy of solvation -84.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds