Wall clock time and date at job start Tue Mar 31 2020 03:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 5 5 N 1.46497 * 109.47408 * 295.00294 * 4 2 1 6 6 C 1.34772 * 120.00342 * 180.02562 * 5 4 2 7 7 O 1.21282 * 120.00300 * 359.97438 * 6 5 4 8 8 C 1.50707 * 120.00075 * 180.02562 * 6 5 4 9 9 H 1.09005 * 109.46903 * 319.99479 * 8 6 5 10 10 N 1.46899 * 109.46985 * 199.99571 * 8 6 5 11 11 C 1.52999 * 109.47369 * 79.99815 * 8 6 5 12 12 C 1.52998 * 109.46960 * 185.00289 * 11 8 6 13 13 C 1.50702 * 109.46945 * 179.97438 * 12 11 8 14 14 H 1.08000 * 119.99818 * 359.97438 * 13 12 11 15 15 C 1.37881 * 119.99963 * 180.02562 * 13 12 11 16 16 N 1.31511 * 119.99890 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99745 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.47301 * 89.99741 * 17 15 13 19 19 H 1.48500 * 109.46792 * 209.99655 * 17 15 13 20 20 H 1.48496 * 109.46939 * 329.99344 * 17 15 13 21 21 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 22 22 N 1.46490 * 109.47115 * 64.99762 * 21 2 1 23 23 C 1.34952 * 126.03687 * 124.71931 * 22 21 2 24 24 C 1.35315 * 107.74557 * 179.83699 * 23 22 21 25 25 C 1.39867 * 107.92303 * 0.42190 * 24 23 22 26 26 N 1.30839 * 108.20075 * 359.73677 * 25 24 23 27 27 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 30 30 H 1.09002 * 109.46906 * 55.00224 * 4 2 1 31 31 H 1.09006 * 109.47717 * 174.99599 * 4 2 1 32 32 H 0.97008 * 119.99817 * 359.97438 * 5 4 2 33 33 H 1.00901 * 111.00459 * 300.00106 * 10 8 6 34 34 H 1.00910 * 110.99946 * 63.95192 * 10 8 6 35 35 H 1.09004 * 109.46528 * 304.99812 * 11 8 6 36 36 H 1.08999 * 109.47281 * 64.99541 * 11 8 6 37 37 H 1.09003 * 109.47197 * 299.99711 * 12 11 8 38 38 H 1.09000 * 109.47176 * 60.00047 * 12 11 8 39 39 H 0.97004 * 119.99782 * 180.02562 * 16 15 13 40 40 H 1.09007 * 109.47135 * 184.99942 * 21 2 1 41 41 H 1.08996 * 109.46945 * 304.99450 * 21 2 1 42 42 H 1.07997 * 126.12875 * 359.97438 * 23 22 21 43 43 H 1.08001 * 126.04024 * 180.15821 * 24 23 22 44 44 H 1.07999 * 125.90097 * 179.75587 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2491 5 7 1.6525 0.0352 2.4423 6 6 1.9966 -0.4132 3.6658 7 8 2.6266 -1.4433 3.7791 8 6 1.5973 0.3647 4.8933 9 1 1.7129 1.4314 4.7009 10 7 2.4548 -0.0252 6.0205 11 6 0.1369 0.0634 5.2355 12 6 -0.3054 0.9457 6.4046 13 6 -1.7442 0.6494 6.7413 14 1 -2.2887 -0.0936 6.1774 15 6 -2.3656 1.3275 7.7684 16 7 -1.7026 2.2325 8.4546 17 14 -4.1487 0.9596 8.1861 18 1 -4.2063 -0.1246 9.1993 19 1 -4.7915 2.1819 8.7321 20 1 -4.8659 0.5292 6.9591 21 6 2.0400 -0.7212 -1.2494 22 7 1.6524 0.0355 -2.4423 23 6 2.4867 0.4851 -3.4031 24 6 1.7399 1.1302 -4.3290 25 6 0.4047 1.0812 -3.9152 26 7 0.3511 0.4252 -2.7844 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 1.6055 -1.7198 1.2950 31 1 3.1264 -0.7995 1.2055 32 1 1.1488 0.8594 2.3517 33 1 2.3657 -1.0105 6.2187 34 1 3.4172 0.2227 5.8454 35 1 -0.4895 0.2695 4.3675 36 1 0.0380 -0.9857 5.5141 37 1 0.3210 0.7397 7.2725 38 1 -0.2066 1.9948 6.1258 39 1 -2.1398 2.7094 9.1775 40 1 3.1264 -0.7994 -1.2057 41 1 1.6055 -1.7197 -1.2953 42 1 3.5581 0.3519 -3.4295 43 1 2.1100 1.6033 -5.2265 44 1 -0.4367 1.5104 -4.4389 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424100663.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:37:45 Heat of formation + Delta-G solvation = 25.508276 kcal Electronic energy + Delta-G solvation = -23013.144736 eV Core-core repulsion = 19580.650259 eV Total energy + Delta-G solvation = -3432.494477 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.46936 -39.85799 -37.19843 -35.18557 -34.01455 -32.79432 -31.67184 -30.20082 -30.07716 -27.40876 -26.86666 -25.53466 -23.37834 -21.50314 -21.35236 -20.80851 -20.50690 -19.69996 -17.69892 -17.17450 -16.32589 -16.07502 -15.76687 -15.54578 -15.04944 -14.85425 -14.44281 -14.30039 -14.09820 -13.68618 -13.47662 -13.36534 -13.07524 -12.82610 -12.73067 -12.31523 -12.01132 -11.80024 -11.55759 -11.36833 -11.25779 -10.89470 -10.68369 -10.58168 -10.54778 -10.16031 -9.80236 -9.69898 -9.37708 -9.11501 -8.99561 -8.91369 -8.35969 -8.21056 -5.93659 -3.95755 1.58514 2.15147 2.55963 2.75024 3.22054 3.35366 3.41532 3.44615 4.08784 4.35413 4.40876 4.50426 4.55262 4.68764 4.82184 4.88357 4.96102 5.10142 5.17406 5.30187 5.41888 5.44340 5.49963 5.52925 5.56054 5.69666 5.78127 5.82642 5.88084 6.14734 6.36818 6.44277 6.48410 6.64782 6.69161 7.08360 7.35422 7.40825 7.56627 7.76074 7.78907 7.96052 8.13049 8.28317 8.48577 9.12200 9.67421 11.17257 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.017583 B = 0.002726 C = 0.002443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.102699 B =10268.091771 C =11460.886910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.113 4.113 3 H 0.082 0.918 4 C 0.125 3.875 5 N -0.728 5.728 6 C 0.484 3.516 7 O -0.555 6.555 8 C 0.078 3.922 9 H 0.097 0.903 10 N -0.807 5.807 11 C -0.095 4.095 12 C 0.031 3.969 13 C -0.522 4.522 14 H 0.052 0.948 15 C 0.058 3.942 16 N -0.893 5.893 17 Si 0.889 3.111 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.275 1.275 21 C 0.139 3.861 22 N -0.369 5.369 23 C 0.052 3.948 24 C -0.276 4.276 25 C 0.040 3.960 26 N -0.287 5.287 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.090 0.910 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.404 0.596 33 H 0.348 0.652 34 H 0.333 0.667 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.035 0.965 38 H 0.013 0.987 39 H 0.259 0.741 40 H 0.098 0.902 41 H 0.089 0.911 42 H 0.172 0.828 43 H 0.146 0.854 44 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.601 -2.557 -24.678 26.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.132 4.132 3 H 0.100 0.900 4 C 0.000 4.000 5 N -0.381 5.381 6 C 0.269 3.731 7 O -0.433 6.433 8 C -0.037 4.037 9 H 0.115 0.885 10 N -0.334 5.334 11 C -0.133 4.133 12 C -0.006 4.006 13 C -0.561 4.561 14 H 0.070 0.930 15 C -0.143 4.143 16 N -0.532 5.532 17 Si 0.717 3.283 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.200 1.200 21 C 0.018 3.982 22 N -0.151 5.151 23 C -0.094 4.094 24 C -0.306 4.306 25 C -0.146 4.146 26 N -0.109 5.109 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.108 0.892 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.239 0.761 33 H 0.162 0.838 34 H 0.145 0.855 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.053 0.947 38 H 0.031 0.969 39 H 0.069 0.931 40 H 0.117 0.883 41 H 0.108 0.892 42 H 0.189 0.811 43 H 0.163 0.837 44 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 9.890 -3.201 -22.941 25.187 hybrid contribution -0.125 -0.076 -1.254 1.262 sum 9.765 -3.277 -24.195 26.296 Atomic orbital electron populations 1.22106 0.92808 1.02963 1.03850 1.21626 0.98730 1.00287 0.92593 0.89999 1.21211 0.99586 0.95656 0.83510 1.46124 1.58352 1.28059 1.05612 1.22776 0.78100 0.86304 0.85880 1.90642 1.40832 1.24860 1.86951 1.21843 0.97564 0.98971 0.85364 0.88468 1.58998 1.11304 1.24832 1.38306 1.21657 0.88822 1.01665 1.01190 1.19017 0.95532 0.93617 0.92429 1.21278 0.97208 1.21413 1.16158 0.92994 1.24993 0.97833 0.95230 0.96292 1.69974 1.36507 1.25139 1.21582 0.86649 0.85369 0.77693 0.78593 1.20717 1.21284 1.19991 1.21726 1.00593 0.94742 0.81181 1.48705 1.04798 1.43003 1.18569 1.22594 0.97565 0.98782 0.90486 1.21516 0.93273 1.11806 1.03987 1.23970 0.97958 0.98731 0.93905 1.77296 0.98836 1.18740 1.16034 0.92390 0.92597 0.89166 0.91256 0.91701 0.76117 0.83816 0.85493 0.92839 0.92846 0.94667 0.96891 0.93100 0.88338 0.89228 0.81074 0.83665 0.80130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.58 8.79 37.16 0.33 -1.26 16 2 C -0.11 -0.92 2.63 -90.62 -0.24 -1.16 16 3 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 4 C 0.13 1.24 5.06 -4.05 -0.02 1.21 16 5 N -0.73 -8.71 5.28 -60.30 -0.32 -9.02 16 6 C 0.48 7.43 7.07 -10.98 -0.08 7.36 16 7 O -0.56 -10.01 16.25 5.56 0.09 -9.92 16 8 C 0.08 1.30 3.15 -68.86 -0.22 1.09 16 9 H 0.10 1.52 8.14 -51.93 -0.42 1.09 16 10 N -0.81 -13.55 8.44 -5.65 -0.05 -13.60 16 11 C -0.09 -1.91 4.78 -26.73 -0.13 -2.04 16 12 C 0.03 0.80 4.86 -27.88 -0.14 0.66 16 13 C -0.52 -14.82 9.11 -34.44 -0.31 -15.13 16 14 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 15 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 16 N -0.89 -27.02 13.29 55.43 0.74 -26.28 16 17 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 18 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 21 C 0.14 0.95 5.96 -4.04 -0.02 0.93 16 22 N -0.37 -3.16 3.68 -61.37 -0.23 -3.39 16 23 C 0.05 0.37 11.45 -17.22 -0.20 0.17 16 24 C -0.28 -2.03 10.80 -40.01 -0.43 -2.47 16 25 C 0.04 0.34 12.03 -17.37 -0.21 0.13 16 26 N -0.29 -2.99 9.62 30.62 0.29 -2.69 16 27 H 0.06 0.60 7.18 -51.93 -0.37 0.23 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.09 0.99 5.36 -51.93 -0.28 0.71 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.40 4.29 7.66 -40.82 -0.31 3.97 16 33 H 0.35 5.94 8.58 -39.29 -0.34 5.60 16 34 H 0.33 4.83 9.06 -39.29 -0.36 4.48 16 35 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.03 0.98 7.75 -51.93 -0.40 0.57 16 38 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 40 H 0.10 0.43 8.07 -51.93 -0.42 0.01 16 41 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.17 0.63 8.06 -52.49 -0.42 0.21 16 43 H 0.15 0.76 8.06 -52.49 -0.42 0.34 16 44 H 0.18 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 365.73 15.07 5.51 5.51 Total: -1.00 -34.61 365.73 -7.84 -42.45 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: -7.09 Total: 9.06 kcal Atomic # 6 Polarization: -7.18 SS G_CDS: -1.76 Total: -8.95 kcal Atomic # 7 Polarization: -55.43 SS G_CDS: 0.44 Total: -54.99 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.09 Total: -9.92 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.61 -7.84 -42.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424100663.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.953 kcal (2) G-P(sol) polarization free energy of solvation -34.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds