Wall clock time and date at job start Tue Mar 31 2020 03:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 5 5 N 1.46497 * 109.47408 * 295.00294 * 4 2 1 6 6 C 1.34772 * 120.00342 * 180.02562 * 5 4 2 7 7 O 1.21282 * 120.00300 * 359.97438 * 6 5 4 8 8 C 1.50707 * 120.00075 * 180.02562 * 6 5 4 9 9 H 1.09005 * 109.46903 * 319.99479 * 8 6 5 10 10 N 1.46899 * 109.46985 * 199.99571 * 8 6 5 11 11 C 1.52999 * 109.47369 * 79.99815 * 8 6 5 12 12 C 1.52998 * 109.46960 * 185.00289 * 11 8 6 13 13 C 1.50702 * 109.46945 * 179.97438 * 12 11 8 14 14 H 1.08000 * 119.99818 * 359.97438 * 13 12 11 15 15 C 1.37881 * 119.99963 * 180.02562 * 13 12 11 16 16 N 1.31511 * 119.99890 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99745 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.47301 * 89.99741 * 17 15 13 19 19 H 1.48500 * 109.46792 * 209.99655 * 17 15 13 20 20 H 1.48496 * 109.46939 * 329.99344 * 17 15 13 21 21 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 22 22 N 1.46490 * 109.47115 * 64.99762 * 21 2 1 23 23 C 1.34952 * 126.03687 * 124.71931 * 22 21 2 24 24 C 1.35315 * 107.74557 * 179.83699 * 23 22 21 25 25 C 1.39867 * 107.92303 * 0.42190 * 24 23 22 26 26 N 1.30839 * 108.20075 * 359.73677 * 25 24 23 27 27 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 30 30 H 1.09002 * 109.46906 * 55.00224 * 4 2 1 31 31 H 1.09006 * 109.47717 * 174.99599 * 4 2 1 32 32 H 0.97008 * 119.99817 * 359.97438 * 5 4 2 33 33 H 1.00901 * 111.00459 * 300.00106 * 10 8 6 34 34 H 1.00910 * 110.99946 * 63.95192 * 10 8 6 35 35 H 1.09004 * 109.46528 * 304.99812 * 11 8 6 36 36 H 1.08999 * 109.47281 * 64.99541 * 11 8 6 37 37 H 1.09003 * 109.47197 * 299.99711 * 12 11 8 38 38 H 1.09000 * 109.47176 * 60.00047 * 12 11 8 39 39 H 0.97004 * 119.99782 * 180.02562 * 16 15 13 40 40 H 1.09007 * 109.47135 * 184.99942 * 21 2 1 41 41 H 1.08996 * 109.46945 * 304.99450 * 21 2 1 42 42 H 1.07997 * 126.12875 * 359.97438 * 23 22 21 43 43 H 1.08001 * 126.04024 * 180.15821 * 24 23 22 44 44 H 1.07999 * 125.90097 * 179.75587 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2491 5 7 1.6525 0.0352 2.4423 6 6 1.9966 -0.4132 3.6658 7 8 2.6266 -1.4433 3.7791 8 6 1.5973 0.3647 4.8933 9 1 1.7129 1.4314 4.7009 10 7 2.4548 -0.0252 6.0205 11 6 0.1369 0.0634 5.2355 12 6 -0.3054 0.9457 6.4046 13 6 -1.7442 0.6494 6.7413 14 1 -2.2887 -0.0936 6.1774 15 6 -2.3656 1.3275 7.7684 16 7 -1.7026 2.2325 8.4546 17 14 -4.1487 0.9596 8.1861 18 1 -4.2063 -0.1246 9.1993 19 1 -4.7915 2.1819 8.7321 20 1 -4.8659 0.5292 6.9591 21 6 2.0400 -0.7212 -1.2494 22 7 1.6524 0.0355 -2.4423 23 6 2.4867 0.4851 -3.4031 24 6 1.7399 1.1302 -4.3290 25 6 0.4047 1.0812 -3.9152 26 7 0.3511 0.4252 -2.7844 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 1.6055 -1.7198 1.2950 31 1 3.1264 -0.7995 1.2055 32 1 1.1488 0.8594 2.3517 33 1 2.3657 -1.0105 6.2187 34 1 3.4172 0.2227 5.8454 35 1 -0.4895 0.2695 4.3675 36 1 0.0380 -0.9857 5.5141 37 1 0.3210 0.7397 7.2725 38 1 -0.2066 1.9948 6.1258 39 1 -2.1398 2.7094 9.1775 40 1 3.1264 -0.7994 -1.2057 41 1 1.6055 -1.7197 -1.2953 42 1 3.5581 0.3519 -3.4295 43 1 2.1100 1.6033 -5.2265 44 1 -0.4367 1.5104 -4.4389 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424100663.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:37:45 Heat of formation + Delta-G solvation = 0.502357 kcal Electronic energy + Delta-G solvation = -23014.229074 eV Core-core repulsion = 19580.650259 eV Total energy + Delta-G solvation = -3433.578815 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.02890 -41.06387 -38.05417 -36.74834 -34.91031 -34.80800 -32.39307 -31.92654 -30.76138 -28.61211 -27.77640 -26.85491 -24.93753 -22.49886 -22.03934 -21.88503 -21.50832 -20.84525 -18.69352 -18.28331 -18.04827 -17.23174 -16.89862 -16.54307 -16.41720 -15.90959 -15.68810 -15.24795 -15.09368 -14.87614 -14.44128 -14.27421 -14.08836 -13.87436 -13.68904 -13.54619 -13.43636 -13.35171 -12.81481 -12.53009 -12.49569 -12.25985 -12.08069 -11.98826 -11.77391 -11.65816 -11.26172 -11.21729 -11.00649 -10.49722 -10.30828 -10.15423 -9.63345 -9.45479 -8.14614 -6.24725 1.03545 1.41071 1.42211 1.49855 1.53263 1.62095 2.00631 2.20117 2.44026 3.18430 3.52102 3.58076 3.68915 3.71064 3.91343 4.06232 4.11038 4.13369 4.26616 4.31726 4.36797 4.52853 4.67577 4.70871 4.77422 4.86063 4.92666 4.95206 4.98795 5.12290 5.20415 5.24704 5.36799 5.41745 5.56563 5.83975 5.87349 5.98196 6.09889 6.19935 6.29941 6.42435 6.53893 6.83423 6.93988 7.11848 7.43334 8.96605 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.017583 B = 0.002726 C = 0.002443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.102699 B =10268.091771 C =11460.886910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.097 4.097 3 H 0.084 0.916 4 C 0.127 3.873 5 N -0.716 5.716 6 C 0.490 3.510 7 O -0.581 6.581 8 C 0.085 3.915 9 H 0.109 0.891 10 N -0.819 5.819 11 C -0.082 4.082 12 C 0.039 3.961 13 C -0.544 4.544 14 H 0.055 0.945 15 C 0.001 3.999 16 N -0.929 5.929 17 Si 0.959 3.041 18 H -0.275 1.275 19 H -0.282 1.282 20 H -0.264 1.264 21 C 0.137 3.863 22 N -0.377 5.377 23 C 0.053 3.947 24 C -0.289 4.289 25 C 0.028 3.972 26 N -0.329 5.329 27 H 0.049 0.951 28 H 0.048 0.952 29 H 0.081 0.919 30 H 0.062 0.938 31 H 0.077 0.923 32 H 0.411 0.589 33 H 0.345 0.655 34 H 0.347 0.653 35 H 0.065 0.935 36 H 0.042 0.958 37 H 0.006 0.994 38 H -0.006 1.006 39 H 0.262 0.738 40 H 0.130 0.870 41 H 0.089 0.911 42 H 0.206 0.794 43 H 0.164 0.836 44 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.052 -2.800 -26.288 28.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.117 4.117 3 H 0.102 0.898 4 C 0.003 3.997 5 N -0.368 5.368 6 C 0.275 3.725 7 O -0.461 6.461 8 C -0.031 4.031 9 H 0.127 0.873 10 N -0.348 5.348 11 C -0.120 4.120 12 C 0.002 3.998 13 C -0.582 4.582 14 H 0.073 0.927 15 C -0.196 4.196 16 N -0.570 5.570 17 Si 0.784 3.216 18 H -0.201 1.201 19 H -0.207 1.207 20 H -0.189 1.189 21 C 0.016 3.984 22 N -0.160 5.160 23 C -0.093 4.093 24 C -0.318 4.318 25 C -0.157 4.157 26 N -0.152 5.152 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.099 0.901 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.248 0.752 33 H 0.159 0.841 34 H 0.160 0.840 35 H 0.083 0.917 36 H 0.061 0.939 37 H 0.025 0.975 38 H 0.012 0.988 39 H 0.071 0.929 40 H 0.148 0.852 41 H 0.107 0.893 42 H 0.223 0.777 43 H 0.181 0.819 44 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 10.336 -3.430 -24.594 26.898 hybrid contribution -0.243 0.030 -0.801 0.838 sum 10.093 -3.399 -25.396 27.538 Atomic orbital electron populations 1.22065 0.94306 1.02202 1.02967 1.21454 0.97231 1.00370 0.92623 0.89810 1.21313 1.00298 0.95092 0.82984 1.46043 1.57173 1.28186 1.05364 1.22288 0.78155 0.85645 0.86370 1.90636 1.42308 1.25813 1.87363 1.21629 0.95310 0.99913 0.86260 0.87294 1.58966 1.12357 1.24712 1.38774 1.21381 0.91574 0.99623 0.99423 1.18828 0.94127 0.93471 0.93376 1.21733 0.98652 1.21400 1.16382 0.92713 1.25899 1.02561 0.94986 0.96190 1.70102 1.38523 1.26174 1.22178 0.85545 0.79756 0.77673 0.78645 1.20119 1.20703 1.18869 1.21842 1.02414 0.94175 0.79972 1.48840 1.04550 1.43338 1.19238 1.23207 0.98977 0.97511 0.89586 1.21854 0.92862 1.12149 1.04911 1.24406 0.99314 0.98318 0.93668 1.77235 1.00385 1.20285 1.17249 0.93226 0.93291 0.90056 0.92011 0.90459 0.75204 0.84117 0.83969 0.91655 0.93916 0.97537 0.98784 0.92916 0.85197 0.89277 0.77727 0.81865 0.78627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.04 8.79 71.98 0.63 -2.41 16 2 C -0.10 -1.42 2.63 -10.79 -0.03 -1.45 16 3 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 4 C 0.13 2.26 5.06 86.38 0.44 2.70 16 5 N -0.72 -15.93 5.28 -463.07 -2.45 -18.38 16 6 C 0.49 14.46 7.07 87.66 0.62 15.08 16 7 O -0.58 -20.29 16.25 -3.03 -0.05 -20.34 16 8 C 0.08 2.76 3.15 44.17 0.14 2.90 16 9 H 0.11 3.29 8.14 -2.38 -0.02 3.27 16 10 N -0.82 -27.39 8.44 -171.79 -1.45 -28.84 16 11 C -0.08 -3.29 4.78 30.59 0.15 -3.14 16 12 C 0.04 2.04 4.86 29.85 0.15 2.19 16 13 C -0.54 -31.09 9.11 25.60 0.23 -30.85 16 14 H 0.05 3.02 7.74 -2.91 -0.02 3.00 16 15 C 0.00 0.08 5.46 84.66 0.46 0.55 16 16 N -0.93 -56.98 13.29 21.45 0.28 -56.69 16 17 Si 0.96 44.80 29.54 68.60 2.03 46.83 16 18 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 19 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 20 H -0.26 -11.80 7.11 99.48 0.71 -11.10 16 21 C 0.14 1.57 5.96 86.38 0.52 2.08 16 22 N -0.38 -5.81 3.68 -348.07 -1.28 -7.09 16 23 C 0.05 0.61 11.45 83.54 0.96 1.57 16 24 C -0.29 -3.72 10.80 21.99 0.24 -3.49 16 25 C 0.03 0.45 12.03 85.24 1.02 1.48 16 26 N -0.33 -6.65 9.62 -57.03 -0.55 -7.19 16 27 H 0.05 1.00 7.18 -2.39 -0.02 0.99 16 28 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.08 1.77 5.36 -2.38 -0.01 1.76 16 30 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 32 H 0.41 8.05 7.66 -92.70 -0.71 7.34 16 33 H 0.35 11.83 8.58 -89.69 -0.77 11.06 16 34 H 0.35 9.84 9.06 -89.69 -0.81 9.02 16 35 H 0.06 2.44 8.14 -2.38 -0.02 2.42 16 36 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.01 0.36 7.75 -2.39 -0.02 0.34 16 38 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 39 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 40 H 0.13 0.66 8.07 -2.38 -0.02 0.64 16 41 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.21 0.73 8.06 -2.91 -0.02 0.71 16 43 H 0.16 1.36 8.06 -2.91 -0.02 1.34 16 44 H 0.20 2.18 8.06 -2.91 -0.02 2.15 16 Total: -1.00 -74.88 365.73 0.78 -74.10 By element: Atomic # 1 Polarization: 31.68 SS G_CDS: -1.28 Total: 30.40 kcal Atomic # 6 Polarization: -18.31 SS G_CDS: 5.52 Total: -12.79 kcal Atomic # 7 Polarization: -112.75 SS G_CDS: -5.44 Total: -118.19 kcal Atomic # 8 Polarization: -20.29 SS G_CDS: -0.05 Total: -20.34 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -74.88 0.78 -74.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424100663.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.601 kcal (2) G-P(sol) polarization free energy of solvation -74.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds