Wall clock time and date at job start Tue Mar 31 2020 03:00:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17407 * 1
3 3 C 1.47195 * 179.97438 * 2 1
4 4 N 1.46511 * 109.46822 * 179.64223 * 3 2 1
5 5 C 1.37093 * 119.99742 * 264.14253 * 4 3 2
6 6 H 1.08004 * 119.99813 * 197.43325 * 5 4 3
7 7 C 1.38947 * 120.00572 * 17.42461 * 5 4 3
8 8 N 1.31413 * 119.99681 * 21.53839 * 7 5 4
9 9 Si 1.86799 * 120.00499 * 201.53798 * 7 5 4
10 10 H 1.48497 * 109.46981 * 0.02562 * 9 7 5
11 11 H 1.48499 * 109.47341 * 119.99870 * 9 7 5
12 12 H 1.48496 * 109.47093 * 240.00210 * 9 7 5
13 13 C 1.34777 * 119.99935 * 84.13499 * 4 3 2
14 14 O 1.21286 * 119.99660 * 180.02562 * 13 4 3
15 15 C 1.50694 * 119.99850 * 0.02562 * 13 4 3
16 16 C 1.53003 * 109.46935 * 179.97438 * 15 13 4
17 17 C 1.53003 * 109.47079 * 179.97438 * 16 15 13
18 18 C 1.53003 * 109.46777 * 179.97438 * 17 16 15
19 19 N 1.46903 * 109.46659 * 179.97438 * 18 17 16
20 20 C 1.47004 * 111.00459 * 293.63783 * 19 18 17
21 21 C 1.53097 * 109.26172 * 177.61131 * 20 19 18
22 22 O 1.43016 * 109.25957 * 56.84536 * 21 20 19
23 23 C 1.43018 * 113.73679 * 301.33279 * 22 21 20
24 24 C 1.47019 * 110.99558 * 169.99933 * 19 18 17
25 25 H 4.40650 * 5.51295 * 179.97438 * 4 1 2
26 26 H 1.09000 * 109.47513 * 59.64368 * 3 2 1
27 27 H 1.09002 * 109.47488 * 299.63623 * 3 2 1
28 28 H 0.97004 * 120.00437 * 180.02562 * 8 7 5
29 29 H 1.09000 * 109.47884 * 59.99505 * 15 13 4
30 30 H 1.08998 * 109.47130 * 299.99026 * 15 13 4
31 31 H 1.09002 * 109.46990 * 299.99513 * 16 15 13
32 32 H 1.08992 * 109.47313 * 59.99782 * 16 15 13
33 33 H 1.09002 * 109.46825 * 299.99630 * 17 16 15
34 34 H 1.09002 * 109.47342 * 59.99848 * 17 16 15
35 35 H 1.09002 * 109.47332 * 299.99554 * 18 17 16
36 36 H 1.09002 * 109.47117 * 59.99944 * 18 17 16
37 37 H 1.09007 * 109.50363 * 297.54112 * 20 19 18
38 38 H 1.08994 * 109.50892 * 57.67164 * 20 19 18
39 39 H 1.08996 * 109.50468 * 296.91215 * 21 20 19
40 40 H 1.08994 * 109.54554 * 176.80567 * 21 20 19
41 41 H 1.09007 * 109.50551 * 298.73264 * 23 22 21
42 42 H 1.09004 * 109.54338 * 178.62948 * 23 22 21
43 43 H 1.08996 * 109.50757 * 302.32750 * 24 19 18
44 44 H 1.08997 * 109.50443 * 62.41964 * 24 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1741 0.0000 0.0000
3 6 2.6460 0.0007 0.0000
4 7 3.1337 1.3822 -0.0086
5 6 3.4761 1.9808 -1.1935
6 1 4.0882 2.8707 -1.1918
7 6 3.0360 1.4427 -2.3965
8 7 1.9849 0.6541 -2.4181
9 14 3.9381 1.8401 -3.9832
10 1 5.0801 2.7430 -3.6905
11 1 4.4444 0.5841 -4.5927
12 1 3.0074 2.5086 -4.9277
13 6 3.2455 2.0646 1.1482
14 8 3.6488 3.2084 1.1410
15 6 2.8695 1.4063 2.4506
16 6 3.0889 2.3905 3.6014
17 6 2.7065 1.7224 4.9237
18 6 2.9265 2.7064 6.0745
19 7 2.5588 2.0651 7.3440
20 6 1.1154 1.7916 7.3975
21 6 0.7861 1.0715 8.7078
22 8 1.2269 1.8705 9.8089
23 6 2.6283 2.1555 9.7888
24 6 2.9762 2.8868 8.4895
25 1 -1.0502 -0.0005 -0.0002
26 1 3.0097 -0.5185 -0.8867
27 1 3.0097 -0.5073 0.8932
28 1 1.6778 0.2781 -3.2579
29 1 3.4905 0.5238 2.6044
30 1 1.8206 1.1116 2.4192
31 1 4.1379 2.6849 3.6327
32 1 2.4682 3.2732 3.4479
33 1 1.6574 1.4284 4.8921
34 1 3.3269 0.8395 5.0775
35 1 3.9758 3.0001 6.1060
36 1 2.3064 3.5896 5.9210
37 1 0.5649 2.7313 7.3504
38 1 0.8329 1.1610 6.5546
39 1 1.2944 0.1076 8.7310
40 1 -0.2906 0.9169 8.7783
41 1 3.1902 1.2231 9.8435
42 1 2.8845 2.7853 10.6408
43 1 4.0521 3.0554 8.4437
44 1 2.4560 3.8441 8.4594
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000490962795.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:00:17
Heat of formation + Delta-G solvation = -17.874427 kcal
Electronic energy + Delta-G solvation = -23374.633802 eV
Core-core repulsion = 19907.965359 eV
Total energy + Delta-G solvation = -3466.668443 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 294.173 amu
Computer time = 0.52 seconds
Orbital eigenvalues (eV)
-39.79036 -38.69611 -36.59989 -35.24490 -33.82226 -32.10056 -31.44098 -31.19252
-29.66651 -26.97305 -26.29329 -24.67012 -24.28114 -22.77581 -20.88442 -20.52149
-18.80893 -17.84968 -16.73129 -16.59753 -16.41662 -16.00704 -15.72411 -15.30785
-15.08846 -14.76467 -14.49555 -14.24767 -14.05975 -13.88432 -13.05412 -12.87256
-12.53637 -12.25790 -12.14878 -11.99865 -11.76828 -11.65949 -11.52856 -11.18399
-11.05830 -10.92763 -10.78203 -10.69030 -10.46680 -10.28481 -10.21212 -9.89464
-9.35399 -9.26263 -8.88816 -8.59754 -8.36932 -7.84535 -6.32090 -3.83985
3.13967 3.26007 3.32780 3.49320 3.65150 3.70263 3.94222 4.05730
4.19609 4.59898 4.71589 4.75317 4.88301 4.92504 5.00822 5.06073
5.11953 5.23103 5.28316 5.37034 5.43426 5.49016 5.53112 5.55225
5.60653 5.70685 5.74302 5.77329 6.00625 6.09226 6.16258 6.17435
6.40932 6.59251 6.70886 6.75109 6.76745 6.81075 6.87811 7.03064
7.57709 8.08037 8.44794 8.80795 9.16172 9.38732 9.94656 10.69010
Molecular weight = 294.17amu
Principal moments of inertia in cm(-1)
A = 0.032231 B = 0.002693 C = 0.002531
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 868.526773 B =10396.124604 C =11058.056899
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.263 4.263
2 C -0.111 4.111
3 C 0.232 3.768
4 N -0.444 5.444
5 C -0.314 4.314
6 H 0.103 0.897
7 C 0.030 3.970
8 N -0.864 5.864
9 Si 0.919 3.081
10 H -0.268 1.268
11 H -0.280 1.280
12 H -0.283 1.283
13 C 0.451 3.549
14 O -0.586 6.586
15 C -0.130 4.130
16 C -0.097 4.097
17 C -0.115 4.115
18 C 0.056 3.944
19 N -0.538 5.538
20 C 0.013 3.987
21 C 0.064 3.936
22 O -0.389 6.389
23 C 0.064 3.936
24 C 0.016 3.984
25 H 0.199 0.801
26 H 0.109 0.891
27 H 0.062 0.938
28 H 0.267 0.733
29 H 0.076 0.924
30 H 0.078 0.922
31 H 0.067 0.933
32 H 0.064 0.936
33 H 0.060 0.940
34 H 0.069 0.931
35 H 0.077 0.923
36 H 0.036 0.964
37 H 0.042 0.958
38 H 0.092 0.908
39 H 0.060 0.940
40 H 0.097 0.903
41 H 0.059 0.941
42 H 0.096 0.904
43 H 0.086 0.914
44 H 0.041 0.959
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.897 -2.909 18.525 18.774
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.282 4.282
2 C -0.113 4.113
3 C 0.108 3.892
4 N -0.163 5.163
5 C -0.441 4.441
6 H 0.121 0.879
7 C -0.174 4.174
8 N -0.502 5.502
9 Si 0.746 3.254
10 H -0.193 1.193
11 H -0.206 1.206
12 H -0.210 1.210
13 C 0.240 3.760
14 O -0.470 6.470
15 C -0.171 4.171
16 C -0.135 4.135
17 C -0.153 4.153
18 C -0.072 4.072
19 N -0.263 5.263
20 C -0.115 4.115
21 C -0.013 4.013
22 O -0.307 6.307
23 C -0.013 4.013
24 C -0.112 4.112
25 H 0.216 0.784
26 H 0.127 0.873
27 H 0.080 0.920
28 H 0.077 0.923
29 H 0.094 0.906
30 H 0.096 0.904
31 H 0.085 0.915
32 H 0.083 0.917
33 H 0.079 0.921
34 H 0.088 0.912
35 H 0.095 0.905
36 H 0.054 0.946
37 H 0.060 0.940
38 H 0.110 0.890
39 H 0.078 0.922
40 H 0.115 0.885
41 H 0.077 0.923
42 H 0.114 0.886
43 H 0.104 0.896
44 H 0.060 0.940
Dipole moment (debyes) X Y Z Total
from point charges -0.638 -2.823 18.528 18.752
hybrid contribution -0.340 0.744 -1.416 1.636
sum -0.978 -2.079 17.112 17.265
Atomic orbital electron populations
1.24273 0.95371 1.02132 1.06448 1.23213 0.94383 0.98325 0.95377
1.18255 0.84234 0.85256 1.01407 1.43750 1.56165 1.10287 1.06057
1.19693 1.30105 1.12607 0.81736 0.87888 1.25277 0.95218 0.97525
0.99386 1.70099 1.19840 1.32934 1.27310 0.85983 0.79740 0.78270
0.81426 1.19254 1.20633 1.20956 1.20159 0.83955 0.86688 0.85234
1.90506 1.51159 1.18291 1.87074 1.21547 1.02321 0.99223 0.93986
1.21210 1.02442 0.98133 0.91728 1.21631 1.01683 0.98650 0.93292
1.22186 1.01058 0.95791 0.88134 1.62242 1.15111 1.46429 1.02538
1.22853 0.88574 1.00621 0.99443 1.22683 1.00107 0.93693 0.84863
1.87972 1.24021 1.72192 1.46531 1.22659 0.82205 0.99701 0.96734
1.22783 1.01607 0.95329 0.91495 0.78427 0.87328 0.91968 0.92265
0.90592 0.90370 0.91475 0.91733 0.92149 0.91197 0.90472 0.94593
0.93978 0.89005 0.92211 0.88495 0.92252 0.88598 0.89582 0.94025
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.26 -5.42 19.25 29.55 0.57 -4.85 16
2 C -0.11 -2.48 10.88 -37.12 -0.40 -2.88 16
3 C 0.23 5.09 4.91 -6.82 -0.03 5.06 16
4 N -0.44 -11.20 2.60 -117.93 -0.31 -11.51 16
5 C -0.31 -8.67 9.33 -14.94 -0.14 -8.81 16
6 H 0.10 3.01 7.39 -52.48 -0.39 2.62 16
7 C 0.03 0.78 4.87 -17.47 -0.08 0.69 16
8 N -0.86 -22.71 9.48 55.50 0.53 -22.18 16
9 Si 0.92 20.50 29.60 -169.99 -5.03 15.47 16
10 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16
11 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16
12 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16
13 C 0.45 10.86 7.56 -10.99 -0.08 10.77 16
14 O -0.59 -16.12 15.63 5.55 0.09 -16.04 16
15 C -0.13 -2.35 4.30 -27.88 -0.12 -2.47 16
16 C -0.10 -1.53 4.50 -26.73 -0.12 -1.65 16
17 C -0.11 -1.41 5.15 -26.73 -0.14 -1.55 16
18 C 0.06 0.63 4.96 -3.82 -0.02 0.61 16
19 N -0.54 -5.71 4.73 -234.31 -1.11 -6.82 16
20 C 0.01 0.13 5.44 -3.72 -0.02 0.11 16
21 C 0.06 0.57 7.01 37.21 0.26 0.83 16
22 O -0.39 -4.11 10.83 -35.23 -0.38 -4.49 16
23 C 0.06 0.55 7.01 37.21 0.26 0.81 16
24 C 0.02 0.15 5.65 -3.71 -0.02 0.13 16
25 H 0.20 3.32 7.80 -54.08 -0.42 2.89 16
26 H 0.11 2.52 6.44 -51.93 -0.33 2.18 16
27 H 0.06 1.13 6.69 -51.93 -0.35 0.78 16
28 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16
29 H 0.08 1.20 7.42 -51.93 -0.39 0.82 16
30 H 0.08 1.38 7.50 -51.93 -0.39 0.99 16
31 H 0.07 1.11 8.10 -51.93 -0.42 0.69 16
32 H 0.06 1.12 8.10 -51.93 -0.42 0.70 16
33 H 0.06 0.72 6.52 -51.93 -0.34 0.38 16
34 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16
35 H 0.08 0.85 8.04 -51.93 -0.42 0.43 16
36 H 0.04 0.43 8.12 -51.93 -0.42 0.01 16
37 H 0.04 0.44 8.14 -51.92 -0.42 0.02 16
38 H 0.09 0.87 6.38 -51.93 -0.33 0.54 16
39 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16
40 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16
41 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16
42 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16
43 H 0.09 0.69 8.09 -51.93 -0.42 0.27 16
44 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16
LS Contribution 356.87 15.07 5.38 5.38
Total: -1.00 -31.84 356.87 -8.06 -39.90
By element:
Atomic # 1 Polarization: 10.60 SS G_CDS: -7.13 Total: 3.48 kcal
Atomic # 6 Polarization: -3.10 SS G_CDS: -0.09 Total: -3.19 kcal
Atomic # 7 Polarization: -39.61 SS G_CDS: -0.89 Total: -40.50 kcal
Atomic # 8 Polarization: -20.23 SS G_CDS: -0.29 Total: -20.53 kcal
Atomic # 14 Polarization: 20.50 SS G_CDS: -5.03 Total: 15.47 kcal
Total LS contribution 5.38 Total: 5.38 kcal
Total: -31.84 -8.06 -39.90 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000490962795.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 22.023 kcal
(2) G-P(sol) polarization free energy of solvation -31.838 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.815 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.059 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.897 kcal
(6) G-S(sol) free energy of system = (1) + (5) -17.874 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.52 seconds