Wall clock time and date at job start Tue Mar 31 2020 03:00:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17407 * 1
3 3 C 1.47195 * 179.97438 * 2 1
4 4 N 1.46511 * 109.46822 * 179.64223 * 3 2 1
5 5 C 1.37093 * 119.99742 * 264.14253 * 4 3 2
6 6 H 1.08004 * 119.99813 * 197.43325 * 5 4 3
7 7 C 1.38947 * 120.00572 * 17.42461 * 5 4 3
8 8 N 1.31413 * 119.99681 * 21.53839 * 7 5 4
9 9 Si 1.86799 * 120.00499 * 201.53798 * 7 5 4
10 10 H 1.48497 * 109.46981 * 0.02562 * 9 7 5
11 11 H 1.48499 * 109.47341 * 119.99870 * 9 7 5
12 12 H 1.48496 * 109.47093 * 240.00210 * 9 7 5
13 13 C 1.34777 * 119.99935 * 84.13499 * 4 3 2
14 14 O 1.21286 * 119.99660 * 180.02562 * 13 4 3
15 15 C 1.50694 * 119.99850 * 0.02562 * 13 4 3
16 16 C 1.53003 * 109.46935 * 179.97438 * 15 13 4
17 17 C 1.53003 * 109.47079 * 179.97438 * 16 15 13
18 18 C 1.53003 * 109.46777 * 179.97438 * 17 16 15
19 19 N 1.46903 * 109.46659 * 179.97438 * 18 17 16
20 20 C 1.47004 * 111.00459 * 293.63783 * 19 18 17
21 21 C 1.53097 * 109.26172 * 177.61131 * 20 19 18
22 22 O 1.43016 * 109.25957 * 56.84536 * 21 20 19
23 23 C 1.43018 * 113.73679 * 301.33279 * 22 21 20
24 24 C 1.47019 * 110.99558 * 169.99933 * 19 18 17
25 25 H 4.40650 * 5.51295 * 179.97438 * 4 1 2
26 26 H 1.09000 * 109.47513 * 59.64368 * 3 2 1
27 27 H 1.09002 * 109.47488 * 299.63623 * 3 2 1
28 28 H 0.97004 * 120.00437 * 180.02562 * 8 7 5
29 29 H 1.09000 * 109.47884 * 59.99505 * 15 13 4
30 30 H 1.08998 * 109.47130 * 299.99026 * 15 13 4
31 31 H 1.09002 * 109.46990 * 299.99513 * 16 15 13
32 32 H 1.08992 * 109.47313 * 59.99782 * 16 15 13
33 33 H 1.09002 * 109.46825 * 299.99630 * 17 16 15
34 34 H 1.09002 * 109.47342 * 59.99848 * 17 16 15
35 35 H 1.09002 * 109.47332 * 299.99554 * 18 17 16
36 36 H 1.09002 * 109.47117 * 59.99944 * 18 17 16
37 37 H 1.09007 * 109.50363 * 297.54112 * 20 19 18
38 38 H 1.08994 * 109.50892 * 57.67164 * 20 19 18
39 39 H 1.08996 * 109.50468 * 296.91215 * 21 20 19
40 40 H 1.08994 * 109.54554 * 176.80567 * 21 20 19
41 41 H 1.09007 * 109.50551 * 298.73264 * 23 22 21
42 42 H 1.09004 * 109.54338 * 178.62948 * 23 22 21
43 43 H 1.08996 * 109.50757 * 302.32750 * 24 19 18
44 44 H 1.08997 * 109.50443 * 62.41964 * 24 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1741 0.0000 0.0000
3 6 2.6460 0.0007 0.0000
4 7 3.1337 1.3822 -0.0086
5 6 3.4761 1.9808 -1.1935
6 1 4.0882 2.8707 -1.1918
7 6 3.0360 1.4427 -2.3965
8 7 1.9849 0.6541 -2.4181
9 14 3.9381 1.8401 -3.9832
10 1 5.0801 2.7430 -3.6905
11 1 4.4444 0.5841 -4.5927
12 1 3.0074 2.5086 -4.9277
13 6 3.2455 2.0646 1.1482
14 8 3.6488 3.2084 1.1410
15 6 2.8695 1.4063 2.4506
16 6 3.0889 2.3905 3.6014
17 6 2.7065 1.7224 4.9237
18 6 2.9265 2.7064 6.0745
19 7 2.5588 2.0651 7.3440
20 6 1.1154 1.7916 7.3975
21 6 0.7861 1.0715 8.7078
22 8 1.2269 1.8705 9.8089
23 6 2.6283 2.1555 9.7888
24 6 2.9762 2.8868 8.4895
25 1 -1.0502 -0.0005 -0.0002
26 1 3.0097 -0.5185 -0.8867
27 1 3.0097 -0.5073 0.8932
28 1 1.6778 0.2781 -3.2579
29 1 3.4905 0.5238 2.6044
30 1 1.8206 1.1116 2.4192
31 1 4.1379 2.6849 3.6327
32 1 2.4682 3.2732 3.4479
33 1 1.6574 1.4284 4.8921
34 1 3.3269 0.8395 5.0775
35 1 3.9758 3.0001 6.1060
36 1 2.3064 3.5896 5.9210
37 1 0.5649 2.7313 7.3504
38 1 0.8329 1.1610 6.5546
39 1 1.2944 0.1076 8.7310
40 1 -0.2906 0.9169 8.7783
41 1 3.1902 1.2231 9.8435
42 1 2.8845 2.7853 10.6408
43 1 4.0521 3.0554 8.4437
44 1 2.4560 3.8441 8.4594
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000490962795.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:00:17
Heat of formation + Delta-G solvation = -38.464196 kcal
Electronic energy + Delta-G solvation = -23375.526642 eV
Core-core repulsion = 19907.965359 eV
Total energy + Delta-G solvation = -3467.561283 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 294.173 amu
Computer time = 0.55 seconds
Orbital eigenvalues (eV)
-40.64119 -40.43130 -37.57512 -37.03391 -35.07089 -33.95328 -33.00246 -32.14803
-30.83777 -28.39472 -27.74021 -26.33850 -25.01220 -24.03333 -21.95624 -21.31936
-20.54893 -19.66552 -18.38437 -17.86521 -17.46584 -17.16257 -16.81522 -16.50241
-16.15572 -15.99072 -15.95126 -15.64547 -15.27940 -14.97364 -14.51441 -14.35983
-13.98650 -13.59727 -13.54282 -13.39153 -13.13044 -12.83237 -12.65942 -12.44913
-12.38574 -12.26699 -12.18445 -12.12806 -11.82037 -11.56316 -11.30452 -11.17825
-11.06516 -10.65714 -10.61691 -10.27700 -9.81339 -9.41931 -8.31620 -5.91540
1.34657 1.42053 1.55177 1.92079 2.16366 2.33917 2.39910 2.70954
2.97519 3.05681 3.25637 3.83063 3.90565 3.94965 3.99831 4.05850
4.06892 4.20333 4.23611 4.32796 4.41101 4.51190 4.57622 4.61541
4.64545 4.71879 4.78364 4.83683 4.87511 4.93501 4.95771 5.00415
5.04990 5.09348 5.35738 5.44501 5.47423 5.47989 5.95221 5.97402
6.08159 6.18858 6.46623 7.15470 7.17372 7.45438 8.02621 8.67069
Molecular weight = 294.17amu
Principal moments of inertia in cm(-1)
A = 0.032231 B = 0.002693 C = 0.002531
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 868.526773 B =10396.124604 C =11058.056899
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.247 4.247
2 C -0.153 4.153
3 C 0.234 3.766
4 N -0.456 5.456
5 C -0.352 4.352
6 H 0.072 0.928
7 C 0.002 3.998
8 N -0.872 5.872
9 Si 0.982 3.018
10 H -0.276 1.276
11 H -0.264 1.264
12 H -0.281 1.281
13 C 0.437 3.563
14 O -0.633 6.633
15 C -0.117 4.117
16 C -0.088 4.088
17 C -0.100 4.100
18 C 0.059 3.941
19 N -0.542 5.542
20 C 0.012 3.988
21 C 0.063 3.937
22 O -0.408 6.408
23 C 0.063 3.937
24 C 0.015 3.985
25 H 0.232 0.768
26 H 0.091 0.909
27 H 0.101 0.899
28 H 0.271 0.729
29 H 0.105 0.895
30 H 0.087 0.913
31 H 0.056 0.944
32 H 0.042 0.958
33 H 0.067 0.933
34 H 0.080 0.920
35 H 0.079 0.921
36 H 0.026 0.974
37 H 0.032 0.968
38 H 0.097 0.903
39 H 0.064 0.936
40 H 0.112 0.888
41 H 0.064 0.936
42 H 0.114 0.886
43 H 0.097 0.903
44 H 0.033 0.967
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.467 -4.433 19.337 19.892
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.266 4.266
2 C -0.154 4.154
3 C 0.111 3.889
4 N -0.175 5.175
5 C -0.480 4.480
6 H 0.090 0.910
7 C -0.201 4.201
8 N -0.509 5.509
9 Si 0.806 3.194
10 H -0.201 1.201
11 H -0.189 1.189
12 H -0.207 1.207
13 C 0.227 3.773
14 O -0.521 6.521
15 C -0.157 4.157
16 C -0.127 4.127
17 C -0.138 4.138
18 C -0.069 4.069
19 N -0.267 5.267
20 C -0.116 4.116
21 C -0.013 4.013
22 O -0.327 6.327
23 C -0.013 4.013
24 C -0.113 4.113
25 H 0.249 0.751
26 H 0.109 0.891
27 H 0.119 0.881
28 H 0.081 0.919
29 H 0.123 0.877
30 H 0.105 0.895
31 H 0.075 0.925
32 H 0.061 0.939
33 H 0.086 0.914
34 H 0.099 0.901
35 H 0.098 0.902
36 H 0.044 0.956
37 H 0.050 0.950
38 H 0.115 0.885
39 H 0.083 0.917
40 H 0.130 0.870
41 H 0.082 0.918
42 H 0.132 0.868
43 H 0.116 0.884
44 H 0.052 0.948
Dipole moment (debyes) X Y Z Total
from point charges -1.226 -4.387 19.349 19.878
hybrid contribution -0.215 1.231 -1.678 2.092
sum -1.441 -3.156 17.671 18.009
Atomic orbital electron populations
1.25144 0.96353 1.00290 1.04779 1.23474 0.95016 0.99983 0.96961
1.18324 0.84592 0.83544 1.02419 1.43979 1.56146 1.11586 1.05743
1.19564 1.31620 1.13051 0.83769 0.91038 1.25943 0.95475 0.97091
1.01594 1.70184 1.19892 1.32665 1.28183 0.85062 0.78243 0.78453
0.77628 1.20065 1.18861 1.20719 1.21239 0.82714 0.86417 0.86883
1.90464 1.53059 1.20521 1.88012 1.21517 1.03122 1.00065 0.90986
1.21123 1.01409 0.97216 0.92970 1.21471 1.02229 0.98697 0.91396
1.22089 1.01082 0.95215 0.88468 1.62258 1.15557 1.46478 1.02417
1.22901 0.88077 1.00351 1.00288 1.22776 1.01149 0.93453 0.83939
1.87949 1.25105 1.72500 1.47100 1.22791 0.81415 1.00197 0.96941
1.22859 1.02223 0.94882 0.91382 0.75109 0.89099 0.88142 0.91867
0.87701 0.89472 0.92541 0.93878 0.91392 0.90117 0.90233 0.95560
0.94998 0.88525 0.91736 0.87004 0.91792 0.86774 0.88436 0.94836
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.25 -9.63 19.25 74.32 1.43 -8.20 16
2 C -0.15 -6.60 10.88 31.12 0.34 -6.26 16
3 C 0.23 10.11 4.91 84.57 0.42 10.53 16
4 N -0.46 -23.38 2.60 -645.41 -1.68 -25.06 16
5 C -0.35 -20.04 9.33 84.04 0.78 -19.26 16
6 H 0.07 4.42 7.39 -2.91 -0.02 4.39 16
7 C 0.00 0.12 4.87 84.93 0.41 0.53 16
8 N -0.87 -45.48 9.48 21.66 0.21 -45.27 16
9 Si 0.98 42.28 29.60 68.60 2.03 44.31 16
10 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16
11 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16
12 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16
13 C 0.44 21.40 7.56 87.66 0.66 22.07 16
14 O -0.63 -36.27 15.63 -3.05 -0.05 -36.31 16
15 C -0.12 -4.08 4.30 29.85 0.13 -3.95 16
16 C -0.09 -2.76 4.50 30.60 0.14 -2.62 16
17 C -0.10 -2.29 5.15 30.60 0.16 -2.13 16
18 C 0.06 1.28 4.96 86.30 0.43 1.70 16
19 N -0.54 -10.64 4.73 -895.22 -4.23 -14.87 16
20 C 0.01 0.22 5.44 86.32 0.47 0.69 16
21 C 0.06 1.03 7.01 72.01 0.50 1.54 16
22 O -0.41 -7.96 10.83 -148.98 -1.61 -9.58 16
23 C 0.06 0.96 7.01 72.02 0.50 1.47 16
24 C 0.01 0.25 5.65 86.31 0.49 0.74 16
25 H 0.23 6.96 7.80 -4.41 -0.03 6.93 16
26 H 0.09 4.21 6.44 -2.39 -0.02 4.20 16
27 H 0.10 3.45 6.69 -2.39 -0.02 3.43 16
28 H 0.27 13.36 8.31 -92.70 -0.77 12.59 16
29 H 0.10 3.05 7.42 -2.39 -0.02 3.03 16
30 H 0.09 2.92 7.50 -2.39 -0.02 2.90 16
31 H 0.06 1.87 8.10 -2.39 -0.02 1.85 16
32 H 0.04 1.51 8.10 -2.39 -0.02 1.49 16
33 H 0.07 1.47 6.52 -2.39 -0.02 1.46 16
34 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16
35 H 0.08 1.67 8.04 -2.39 -0.02 1.65 16
36 H 0.03 0.61 8.12 -2.39 -0.02 0.60 16
37 H 0.03 0.65 8.14 -2.38 -0.02 0.63 16
38 H 0.10 1.65 6.38 -2.39 -0.02 1.63 16
39 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16
40 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16
41 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16
42 H 0.11 1.28 8.14 -2.38 -0.02 1.26 16
43 H 0.10 1.41 8.09 -2.39 -0.02 1.39 16
44 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16
Total: -1.00 -70.04 356.87 2.49 -67.55
By element:
Atomic # 1 Polarization: 21.43 SS G_CDS: 0.96 Total: 22.40 kcal
Atomic # 6 Polarization: -10.03 SS G_CDS: 6.86 Total: -3.17 kcal
Atomic # 7 Polarization: -79.49 SS G_CDS: -5.70 Total: -85.20 kcal
Atomic # 8 Polarization: -44.23 SS G_CDS: -1.66 Total: -45.89 kcal
Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.31 kcal
Total: -70.04 2.49 -67.55 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000490962795.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 29.085 kcal
(2) G-P(sol) polarization free energy of solvation -70.042 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.956 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.492 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.549 kcal
(6) G-S(sol) free energy of system = (1) + (5) -38.464 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.55 seconds