Wall clock time and date at job start Tue Mar 31 2020 03:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46495 * 109.47079 * 2 1 4 4 C 1.46499 * 119.99993 * 263.41731 * 3 2 1 5 5 C 1.50699 * 109.46957 * 269.99811 * 4 3 2 6 6 H 1.07998 * 120.00328 * 0.02562 * 5 4 3 7 7 C 1.37882 * 120.00103 * 179.97438 * 5 4 3 8 8 N 1.31517 * 119.99894 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00215 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47061 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47205 * 120.00429 * 9 7 5 12 12 H 1.48506 * 109.47414 * 240.00084 * 9 7 5 13 13 C 1.34779 * 119.99809 * 83.41791 * 3 2 1 14 14 O 1.21574 * 119.99745 * 184.02766 * 13 3 2 15 15 C 1.47704 * 120.00110 * 4.03558 * 13 3 2 16 16 C 1.41500 * 126.52163 * 173.63317 * 15 13 3 17 17 C 1.35359 * 105.50731 * 179.97438 * 16 15 13 18 18 N 1.35034 * 107.22684 * 0.22208 * 17 16 15 19 19 C 1.46507 * 124.88575 * 179.76857 * 18 17 16 20 20 C 1.52998 * 109.47171 * 125.00137 * 19 18 17 21 21 N 1.46901 * 109.47002 * 180.02562 * 20 19 18 22 22 C 1.46905 * 110.99729 * 170.00142 * 21 20 19 23 23 C 1.46895 * 110.99853 * 293.95358 * 21 20 19 24 24 N 1.28466 * 110.23289 * 359.61317 * 18 17 16 25 25 H 1.09001 * 109.47150 * 299.99554 * 1 2 3 26 26 H 1.08998 * 109.47660 * 59.99748 * 1 2 3 27 27 H 1.09001 * 109.47235 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46914 * 239.99979 * 2 1 3 29 29 H 1.08998 * 109.46954 * 120.00498 * 2 1 3 30 30 H 1.08997 * 109.47715 * 30.00075 * 4 3 2 31 31 H 1.09005 * 109.47094 * 150.00519 * 4 3 2 32 32 H 0.97003 * 120.00154 * 179.97438 * 8 7 5 33 33 H 1.08007 * 127.24565 * 359.93525 * 16 15 13 34 34 H 1.08002 * 126.39171 * 179.97438 * 17 16 15 35 35 H 1.08998 * 109.46958 * 245.00538 * 19 18 17 36 36 H 1.09005 * 109.46564 * 5.00261 * 19 18 17 37 37 H 1.09003 * 109.47161 * 300.00385 * 20 19 18 38 38 H 1.09005 * 109.47020 * 60.00072 * 20 19 18 39 39 H 1.08998 * 109.46983 * 59.99770 * 22 21 20 40 40 H 1.09003 * 109.46739 * 180.02562 * 22 21 20 41 41 H 1.08997 * 109.47159 * 300.00191 * 22 21 20 42 42 H 1.09004 * 109.47347 * 60.00501 * 23 21 20 43 43 H 1.09000 * 109.47106 * 179.97438 * 23 21 20 44 44 H 1.08992 * 109.47419 * 299.99992 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3996 2.0233 -1.2604 5 6 3.8611 1.7730 -1.5296 6 1 4.4472 1.1933 -0.8319 7 6 4.4498 2.2833 -2.6672 8 7 3.7360 2.9889 -3.5171 9 14 6.2611 1.9725 -3.0013 10 1 6.8346 1.1568 -1.9008 11 1 6.4095 1.2434 -4.2865 12 1 6.9793 3.2698 -3.0825 13 6 2.1168 2.0611 1.1595 14 8 2.4518 3.2297 1.1523 15 6 1.8177 1.3864 2.4390 16 6 1.9956 1.9235 3.7360 17 6 1.5906 0.9531 4.5882 18 7 1.2003 -0.1001 3.8387 19 6 0.6938 -1.3669 4.3727 20 6 -0.6755 -1.6676 3.7601 21 7 -1.1835 -2.9375 4.2961 22 6 -2.5881 -3.1439 3.9185 23 6 -0.3496 -4.0648 3.8583 24 7 1.3339 0.1696 2.5898 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.8041 1.6091 -2.0739 31 1 2.2218 3.0964 -1.1897 32 1 4.1502 3.3482 -4.3172 33 1 2.3752 2.9017 3.9920 34 1 1.5847 1.0089 5.6668 35 1 1.3877 -2.1696 4.1234 36 1 0.5987 -1.2923 5.4561 37 1 -1.3694 -0.8648 4.0095 38 1 -0.5804 -1.7422 2.6767 39 1 -2.6731 -3.1641 2.8320 40 1 -2.9392 -4.0909 4.3285 41 1 -3.1944 -2.3296 4.3151 42 1 0.6715 -3.9201 4.2114 43 1 -0.7477 -4.9924 4.2696 44 1 -0.3535 -4.1185 2.7698 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000518996704.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:40:24 Heat of formation + Delta-G solvation = 65.452875 kcal Electronic energy + Delta-G solvation = -24236.865624 eV Core-core repulsion = 20806.103275 eV Total energy + Delta-G solvation = -3430.762349 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.47038 -38.63498 -37.98735 -35.16328 -33.66887 -32.69065 -30.57933 -29.93000 -29.32829 -28.00284 -27.12712 -25.14324 -23.40885 -22.82154 -21.83327 -21.32541 -20.70012 -18.62140 -17.26571 -16.40845 -16.37638 -16.08579 -15.75881 -15.32251 -15.06421 -14.77946 -14.23197 -14.06817 -13.84938 -13.49663 -13.21446 -12.99165 -12.80745 -12.68722 -12.36435 -12.23412 -12.13881 -11.91484 -11.82321 -11.55256 -11.44168 -11.13840 -10.89188 -10.80012 -10.52726 -10.19239 -9.91895 -9.54861 -9.07941 -8.94900 -8.89042 -8.78419 -8.37562 -7.52701 -5.98071 -4.02431 1.94726 2.43262 2.45420 3.34051 3.41272 3.46165 3.59126 4.02813 4.18684 4.31562 4.42219 4.50894 4.72335 4.83706 4.89712 4.97394 5.01603 5.11106 5.19588 5.33954 5.37331 5.41140 5.48514 5.53200 5.58259 5.69331 5.86640 5.91487 5.99894 6.04001 6.31922 6.43698 6.46417 6.49732 6.57653 6.76122 6.96544 7.21424 7.53258 7.66575 7.98954 8.13327 8.30727 8.54870 8.97249 9.18875 9.62445 11.09916 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.020256 B = 0.003738 C = 0.003499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.973183 B = 7489.275546 C = 8000.067454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.105 3.895 3 N -0.582 5.582 4 C 0.245 3.755 5 C -0.524 4.524 6 H 0.058 0.942 7 C 0.060 3.940 8 N -0.895 5.895 9 Si 0.898 3.102 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.587 3.413 14 O -0.538 6.538 15 C 0.002 3.998 16 C -0.183 4.183 17 C -0.023 4.023 18 N -0.295 5.295 19 C 0.128 3.872 20 C 0.040 3.960 21 N -0.546 5.546 22 C 0.025 3.975 23 C 0.016 3.984 24 N -0.258 5.258 25 H 0.051 0.949 26 H 0.050 0.950 27 H 0.051 0.949 28 H 0.073 0.927 29 H 0.089 0.911 30 H 0.033 0.967 31 H 0.045 0.955 32 H 0.262 0.738 33 H 0.159 0.841 34 H 0.177 0.823 35 H 0.090 0.910 36 H 0.107 0.893 37 H 0.081 0.919 38 H 0.058 0.942 39 H 0.030 0.970 40 H 0.071 0.929 41 H 0.069 0.931 42 H 0.070 0.930 43 H 0.071 0.929 44 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.074 -14.020 17.782 25.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.019 4.019 3 N -0.312 5.312 4 C 0.126 3.874 5 C -0.563 4.563 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.726 3.274 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.372 3.628 14 O -0.413 6.413 15 C -0.158 4.158 16 C -0.211 4.211 17 C -0.165 4.165 18 N -0.083 5.083 19 C 0.007 3.993 20 C -0.088 4.088 21 N -0.270 5.270 22 C -0.123 4.123 23 C -0.133 4.133 24 N -0.093 5.093 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.092 0.908 29 H 0.106 0.894 30 H 0.051 0.949 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.177 0.823 34 H 0.194 0.806 35 H 0.108 0.892 36 H 0.126 0.874 37 H 0.100 0.900 38 H 0.077 0.923 39 H 0.049 0.951 40 H 0.090 0.910 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -11.260 -14.330 17.531 25.288 hybrid contribution 1.200 0.380 -0.632 1.409 sum -10.060 -13.951 16.899 24.112 Atomic orbital electron populations 1.22057 0.97076 1.00576 1.01486 1.21637 0.93414 0.83806 1.03075 1.48113 1.61724 1.13377 1.08034 1.19331 0.95225 0.94560 0.78283 1.21501 0.94967 1.33500 1.06336 0.92372 1.24935 0.98267 0.94986 0.95953 1.69950 1.36049 1.35393 1.12029 0.86444 0.85037 0.78028 0.77920 1.19814 1.21017 1.20865 1.16936 0.78503 0.85700 0.81690 1.90751 1.48659 1.15703 1.86229 1.22448 1.05564 0.91817 0.96009 1.21784 1.07143 1.01287 0.90852 1.22765 1.06370 0.88554 0.98847 1.45609 1.46049 1.12942 1.03705 1.21845 0.95748 0.82365 0.99376 1.22365 0.95148 0.92481 0.98832 1.61939 1.03228 1.02078 1.59783 1.22383 0.88271 1.02646 0.99015 1.22519 0.98118 0.93760 0.98858 1.73802 1.19200 1.17090 0.99183 0.93011 0.93048 0.93014 0.90808 0.89364 0.94866 0.93669 0.92828 0.82316 0.80620 0.89173 0.87444 0.90016 0.92338 0.95139 0.91028 0.91184 0.91080 0.91069 0.94897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 9.74 37.16 0.36 -2.09 16 2 C 0.11 1.97 5.71 -4.05 -0.02 1.95 16 3 N -0.58 -13.58 2.47 -176.23 -0.44 -14.02 16 4 C 0.25 6.73 5.16 -5.19 -0.03 6.71 16 5 C -0.52 -15.43 9.39 -34.44 -0.32 -15.75 16 6 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 7 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 8 N -0.89 -27.18 13.29 55.43 0.74 -26.44 16 9 Si 0.90 22.40 29.54 -169.99 -5.02 17.38 16 10 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 13 C 0.59 13.79 7.62 -12.39 -0.09 13.69 16 14 O -0.54 -14.56 16.49 5.30 0.09 -14.47 16 15 C 0.00 0.05 6.64 -82.77 -0.55 -0.50 16 16 C -0.18 -2.84 10.81 -39.37 -0.43 -3.27 16 17 C -0.02 -0.27 11.40 -17.17 -0.20 -0.46 16 18 N -0.29 -3.57 3.41 -61.33 -0.21 -3.78 16 19 C 0.13 1.05 6.32 -4.04 -0.03 1.02 16 20 C 0.04 0.34 5.06 -3.82 -0.02 0.32 16 21 N -0.55 -4.02 5.02 -251.26 -1.26 -5.29 16 22 C 0.02 0.16 9.57 60.07 0.57 0.74 16 23 C 0.02 0.10 9.32 60.06 0.56 0.66 16 24 N -0.26 -4.04 6.97 33.42 0.23 -3.80 16 25 H 0.05 0.85 7.04 -51.93 -0.37 0.48 16 26 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.07 1.41 8.02 -51.93 -0.42 0.99 16 29 H 0.09 1.58 5.37 -51.93 -0.28 1.31 16 30 H 0.03 0.92 8.07 -51.93 -0.42 0.50 16 31 H 0.05 1.38 7.37 -51.93 -0.38 1.00 16 32 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 33 H 0.16 2.36 8.06 -52.48 -0.42 1.94 16 34 H 0.18 1.28 8.06 -52.49 -0.42 0.86 16 35 H 0.09 0.70 6.55 -51.93 -0.34 0.35 16 36 H 0.11 0.64 8.04 -51.93 -0.42 0.22 16 37 H 0.08 0.73 8.06 -51.93 -0.42 0.31 16 38 H 0.06 0.60 8.06 -51.93 -0.42 0.18 16 39 H 0.03 0.21 8.14 -51.93 -0.42 -0.22 16 40 H 0.07 0.38 8.12 -51.93 -0.42 -0.04 16 41 H 0.07 0.43 8.12 -51.93 -0.42 0.01 16 42 H 0.07 0.41 6.47 -51.93 -0.34 0.08 16 43 H 0.07 0.38 8.12 -51.93 -0.42 -0.04 16 44 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 LS Contribution 362.94 15.07 5.47 5.47 Total: -1.00 -35.01 362.94 -7.83 -42.84 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: -7.14 Total: -2.57 kcal Atomic # 6 Polarization: 4.97 SS G_CDS: -0.28 Total: 4.68 kcal Atomic # 7 Polarization: -52.39 SS G_CDS: -0.94 Total: -53.33 kcal Atomic # 8 Polarization: -14.56 SS G_CDS: 0.09 Total: -14.47 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.01 -7.83 -42.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000518996704.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.293 kcal (2) G-P(sol) polarization free energy of solvation -35.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds