Wall clock time and date at job start Tue Mar 31 2020 03:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46495 * 109.47079 * 2 1 4 4 C 1.46499 * 119.99993 * 263.41731 * 3 2 1 5 5 C 1.50699 * 109.46957 * 269.99811 * 4 3 2 6 6 H 1.07998 * 120.00328 * 0.02562 * 5 4 3 7 7 C 1.37882 * 120.00103 * 179.97438 * 5 4 3 8 8 N 1.31517 * 119.99894 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00215 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47061 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47205 * 120.00429 * 9 7 5 12 12 H 1.48506 * 109.47414 * 240.00084 * 9 7 5 13 13 C 1.34779 * 119.99809 * 83.41791 * 3 2 1 14 14 O 1.21574 * 119.99745 * 184.02766 * 13 3 2 15 15 C 1.47704 * 120.00110 * 4.03558 * 13 3 2 16 16 C 1.41500 * 126.52163 * 173.63317 * 15 13 3 17 17 C 1.35359 * 105.50731 * 179.97438 * 16 15 13 18 18 N 1.35034 * 107.22684 * 0.22208 * 17 16 15 19 19 C 1.46507 * 124.88575 * 179.76857 * 18 17 16 20 20 C 1.52998 * 109.47171 * 125.00137 * 19 18 17 21 21 N 1.46901 * 109.47002 * 180.02562 * 20 19 18 22 22 C 1.46905 * 110.99729 * 170.00142 * 21 20 19 23 23 C 1.46895 * 110.99853 * 293.95358 * 21 20 19 24 24 N 1.28466 * 110.23289 * 359.61317 * 18 17 16 25 25 H 1.09001 * 109.47150 * 299.99554 * 1 2 3 26 26 H 1.08998 * 109.47660 * 59.99748 * 1 2 3 27 27 H 1.09001 * 109.47235 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46914 * 239.99979 * 2 1 3 29 29 H 1.08998 * 109.46954 * 120.00498 * 2 1 3 30 30 H 1.08997 * 109.47715 * 30.00075 * 4 3 2 31 31 H 1.09005 * 109.47094 * 150.00519 * 4 3 2 32 32 H 0.97003 * 120.00154 * 179.97438 * 8 7 5 33 33 H 1.08007 * 127.24565 * 359.93525 * 16 15 13 34 34 H 1.08002 * 126.39171 * 179.97438 * 17 16 15 35 35 H 1.08998 * 109.46958 * 245.00538 * 19 18 17 36 36 H 1.09005 * 109.46564 * 5.00261 * 19 18 17 37 37 H 1.09003 * 109.47161 * 300.00385 * 20 19 18 38 38 H 1.09005 * 109.47020 * 60.00072 * 20 19 18 39 39 H 1.08998 * 109.46983 * 59.99770 * 22 21 20 40 40 H 1.09003 * 109.46739 * 180.02562 * 22 21 20 41 41 H 1.08997 * 109.47159 * 300.00191 * 22 21 20 42 42 H 1.09004 * 109.47347 * 60.00501 * 23 21 20 43 43 H 1.09000 * 109.47106 * 179.97438 * 23 21 20 44 44 H 1.08992 * 109.47419 * 299.99992 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3996 2.0233 -1.2604 5 6 3.8611 1.7730 -1.5296 6 1 4.4472 1.1933 -0.8319 7 6 4.4498 2.2833 -2.6672 8 7 3.7360 2.9889 -3.5171 9 14 6.2611 1.9725 -3.0013 10 1 6.8346 1.1568 -1.9008 11 1 6.4095 1.2434 -4.2865 12 1 6.9793 3.2698 -3.0825 13 6 2.1168 2.0611 1.1595 14 8 2.4518 3.2297 1.1523 15 6 1.8177 1.3864 2.4390 16 6 1.9956 1.9235 3.7360 17 6 1.5906 0.9531 4.5882 18 7 1.2003 -0.1001 3.8387 19 6 0.6938 -1.3669 4.3727 20 6 -0.6755 -1.6676 3.7601 21 7 -1.1835 -2.9375 4.2961 22 6 -2.5881 -3.1439 3.9185 23 6 -0.3496 -4.0648 3.8583 24 7 1.3339 0.1696 2.5898 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.8041 1.6091 -2.0739 31 1 2.2218 3.0964 -1.1897 32 1 4.1502 3.3482 -4.3172 33 1 2.3752 2.9017 3.9920 34 1 1.5847 1.0089 5.6668 35 1 1.3877 -2.1696 4.1234 36 1 0.5987 -1.2923 5.4561 37 1 -1.3694 -0.8648 4.0095 38 1 -0.5804 -1.7422 2.6767 39 1 -2.6731 -3.1641 2.8320 40 1 -2.9392 -4.0909 4.3285 41 1 -3.1944 -2.3296 4.3151 42 1 0.6715 -3.9201 4.2114 43 1 -0.7477 -4.9924 4.2696 44 1 -0.3535 -4.1185 2.7698 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000518996704.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:40:24 Heat of formation + Delta-G solvation = 40.867018 kcal Electronic energy + Delta-G solvation = -24237.931747 eV Core-core repulsion = 20806.103275 eV Total energy + Delta-G solvation = -3431.828472 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.60912 -40.41162 -38.61169 -37.01719 -35.03423 -34.45471 -31.93321 -31.43594 -30.35971 -29.02329 -28.48777 -26.34087 -24.94966 -24.41436 -23.02386 -22.34680 -21.69435 -20.10658 -18.66669 -18.38161 -17.62976 -17.27951 -17.11711 -16.40568 -16.25113 -15.96277 -15.74966 -15.22136 -15.02566 -14.72038 -14.61406 -14.30241 -14.16071 -13.94451 -13.57798 -13.34183 -13.26041 -13.11643 -12.90356 -12.73868 -12.64911 -12.55280 -12.50032 -12.26413 -12.19680 -12.03119 -11.73302 -11.39163 -10.90358 -10.65902 -10.11672 -9.99665 -9.45214 -9.42277 -8.23572 -6.39199 0.64085 1.27221 1.35530 1.38273 1.50193 1.52436 2.26327 2.43950 2.52352 2.99207 3.05266 3.40953 3.78533 3.81597 4.04014 4.12989 4.24031 4.26710 4.34921 4.45452 4.50416 4.60531 4.63499 4.69152 4.78023 4.79330 4.82849 4.86887 4.91788 4.99385 5.01250 5.02897 5.07551 5.17111 5.29240 5.46272 5.57503 5.83422 5.87189 5.95268 6.03894 6.05191 6.65229 6.71813 6.97352 7.24863 7.41791 8.83989 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.020256 B = 0.003738 C = 0.003499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.973183 B = 7489.275546 C = 8000.067454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.105 3.895 3 N -0.590 5.590 4 C 0.261 3.739 5 C -0.546 4.546 6 H 0.050 0.950 7 C 0.008 3.992 8 N -0.927 5.927 9 Si 0.972 3.028 10 H -0.269 1.269 11 H -0.266 1.266 12 H -0.278 1.278 13 C 0.578 3.422 14 O -0.592 6.592 15 C -0.038 4.038 16 C -0.209 4.209 17 C 0.013 3.987 18 N -0.280 5.280 19 C 0.122 3.878 20 C 0.045 3.955 21 N -0.545 5.545 22 C 0.023 3.977 23 C 0.013 3.987 24 N -0.257 5.257 25 H 0.047 0.953 26 H 0.037 0.963 27 H 0.086 0.914 28 H 0.067 0.933 29 H 0.103 0.897 30 H 0.024 0.976 31 H 0.001 0.999 32 H 0.269 0.731 33 H 0.155 0.845 34 H 0.232 0.768 35 H 0.102 0.898 36 H 0.144 0.856 37 H 0.077 0.923 38 H 0.038 0.962 39 H 0.023 0.977 40 H 0.084 0.916 41 H 0.072 0.928 42 H 0.079 0.921 43 H 0.082 0.918 44 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.979 -16.711 20.348 28.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.018 4.018 3 N -0.319 5.319 4 C 0.140 3.860 5 C -0.584 4.584 6 H 0.069 0.931 7 C -0.191 4.191 8 N -0.566 5.566 9 Si 0.796 3.204 10 H -0.193 1.193 11 H -0.191 1.191 12 H -0.204 1.204 13 C 0.366 3.634 14 O -0.472 6.472 15 C -0.196 4.196 16 C -0.237 4.237 17 C -0.130 4.130 18 N -0.068 5.068 19 C 0.003 3.997 20 C -0.084 4.084 21 N -0.269 5.269 22 C -0.125 4.125 23 C -0.135 4.135 24 N -0.095 5.095 25 H 0.066 0.934 26 H 0.056 0.944 27 H 0.105 0.895 28 H 0.086 0.914 29 H 0.120 0.880 30 H 0.042 0.958 31 H 0.019 0.981 32 H 0.077 0.923 33 H 0.173 0.827 34 H 0.248 0.752 35 H 0.120 0.880 36 H 0.162 0.838 37 H 0.096 0.904 38 H 0.056 0.944 39 H 0.041 0.959 40 H 0.102 0.898 41 H 0.091 0.909 42 H 0.098 0.902 43 H 0.101 0.899 44 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -11.197 -17.074 20.101 28.652 hybrid contribution 1.060 1.118 -1.325 2.032 sum -10.137 -15.957 18.775 26.644 Atomic orbital electron populations 1.21921 0.94718 1.02525 1.00583 1.21852 0.95256 0.81309 1.03381 1.48135 1.61944 1.14965 1.06885 1.18808 0.94718 0.92275 0.80161 1.21700 0.95814 1.34133 1.06760 0.93138 1.25891 1.03426 0.94307 0.95445 1.70065 1.38270 1.35811 1.12499 0.85306 0.78568 0.78148 0.78395 1.19318 1.19130 1.20379 1.17616 0.77291 0.85328 0.83174 1.90688 1.51109 1.18064 1.87324 1.21785 1.09499 0.93671 0.94639 1.21948 1.08862 1.02571 0.90301 1.23402 1.02688 0.86355 1.00592 1.46034 1.43946 1.14170 1.02698 1.22264 0.95535 0.80700 1.01171 1.22258 0.95309 0.93134 0.97671 1.61988 1.03658 1.01805 1.59455 1.22443 0.87940 1.03474 0.98672 1.22590 0.98562 0.93951 0.98378 1.73639 1.18824 1.15604 1.01395 0.93394 0.94399 0.89506 0.91448 0.87978 0.95775 0.98110 0.92254 0.82680 0.75171 0.88035 0.83804 0.90409 0.94371 0.95857 0.89761 0.90942 0.90232 0.89919 0.95838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.44 9.74 71.98 0.70 -3.74 16 2 C 0.10 4.01 5.71 86.38 0.49 4.51 16 3 N -0.59 -29.05 2.47 -829.73 -2.05 -31.10 16 4 C 0.26 15.33 5.16 85.63 0.44 15.77 16 5 C -0.55 -33.47 9.39 25.60 0.24 -33.23 16 6 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 7 C 0.01 0.50 5.46 84.66 0.46 0.96 16 8 N -0.93 -57.91 13.29 21.45 0.28 -57.62 16 9 Si 0.97 46.55 29.54 68.60 2.03 48.58 16 10 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 11 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 12 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 13 C 0.58 28.74 7.62 86.74 0.66 29.40 16 14 O -0.59 -34.48 16.49 -3.95 -0.07 -34.54 16 15 C -0.04 -1.44 6.64 42.45 0.28 -1.16 16 16 C -0.21 -6.33 10.81 22.41 0.24 -6.09 16 17 C 0.01 0.24 11.40 83.54 0.95 1.20 16 18 N -0.28 -5.84 3.41 -347.94 -1.19 -7.02 16 19 C 0.12 1.48 6.32 86.38 0.55 2.02 16 20 C 0.05 0.63 5.06 86.30 0.44 1.07 16 21 N -0.54 -6.35 5.02 -948.84 -4.76 -11.12 16 22 C 0.02 0.24 9.57 127.69 1.22 1.46 16 23 C 0.01 0.13 9.32 127.69 1.19 1.32 16 24 N -0.26 -7.73 6.97 -48.18 -0.34 -8.06 16 25 H 0.05 1.56 7.04 -2.39 -0.02 1.55 16 26 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.09 2.14 8.14 -2.39 -0.02 2.13 16 28 H 0.07 2.63 8.02 -2.38 -0.02 2.61 16 29 H 0.10 3.64 5.37 -2.39 -0.01 3.63 16 30 H 0.02 1.43 8.07 -2.39 -0.02 1.41 16 31 H 0.00 0.05 7.37 -2.38 -0.02 0.03 16 32 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 33 H 0.16 4.68 8.06 -2.91 -0.02 4.66 16 34 H 0.23 1.86 8.06 -2.91 -0.02 1.84 16 35 H 0.10 1.11 6.55 -2.39 -0.02 1.10 16 36 H 0.14 0.82 8.04 -2.38 -0.02 0.80 16 37 H 0.08 1.17 8.06 -2.39 -0.02 1.15 16 38 H 0.04 0.70 8.06 -2.38 -0.02 0.68 16 39 H 0.02 0.28 8.14 -2.39 -0.02 0.26 16 40 H 0.08 0.67 8.12 -2.39 -0.02 0.65 16 41 H 0.07 0.72 8.12 -2.39 -0.02 0.70 16 42 H 0.08 0.65 6.47 -2.39 -0.02 0.63 16 43 H 0.08 0.64 8.12 -2.39 -0.02 0.62 16 44 H 0.02 0.28 8.14 -2.39 -0.02 0.26 16 Total: -1.00 -81.78 362.94 2.75 -79.02 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: 0.97 Total: 8.36 kcal Atomic # 6 Polarization: 5.63 SS G_CDS: 7.87 Total: 13.50 kcal Atomic # 7 Polarization: -106.87 SS G_CDS: -8.05 Total: -114.92 kcal Atomic # 8 Polarization: -34.48 SS G_CDS: -0.07 Total: -34.54 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.58 kcal Total: -81.78 2.75 -79.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000518996704.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.891 kcal (2) G-P(sol) polarization free energy of solvation -81.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds