Wall clock time and date at job start Tue Mar 31 2020 02:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.50697 * 119.99619 * 2 1 4 4 C 1.30996 * 119.99976 * 180.02562 * 2 1 3 5 5 C 1.50699 * 119.99705 * 179.97438 * 4 2 1 6 6 H 1.08998 * 115.55392 * 25.72117 * 5 4 2 7 7 C 1.53007 * 117.49549 * 171.39012 * 5 4 2 8 8 H 1.09001 * 117.49976 * 214.97603 * 7 5 4 9 9 C 1.50695 * 117.49878 * 359.97438 * 7 5 4 10 10 O 1.21284 * 120.00300 * 117.39385 * 9 7 5 11 11 N 1.34779 * 120.00054 * 297.38365 * 9 7 5 12 12 C 1.46497 * 119.99854 * 180.02562 * 11 9 7 13 13 C 1.50706 * 109.46791 * 180.02562 * 12 11 9 14 14 O 1.21291 * 120.00187 * 0.02562 * 13 12 11 15 15 N 1.34780 * 119.99806 * 179.97438 * 13 12 11 16 16 C 1.37095 * 119.99914 * 180.02562 * 15 13 12 17 17 H 1.08001 * 119.99801 * 359.97438 * 16 15 13 18 18 C 1.38951 * 120.00314 * 180.02562 * 16 15 13 19 19 N 1.31411 * 119.99563 * 359.97438 * 18 16 15 20 20 Si 1.86790 * 120.00335 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.47093 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.47509 * 119.99751 * 20 18 16 23 23 H 1.48496 * 109.47518 * 239.99834 * 20 18 16 24 24 C 1.53007 * 60.00039 * 107.48989 * 7 5 4 25 25 C 1.53001 * 117.49756 * 252.51276 * 24 7 5 26 26 C 1.52998 * 117.50166 * 107.48673 * 24 7 5 27 27 H 1.09001 * 109.47441 * 359.97438 * 1 2 3 28 28 H 1.09009 * 109.46539 * 239.99926 * 1 2 3 29 29 H 1.08996 * 109.47334 * 120.00012 * 1 2 3 30 30 H 1.09005 * 109.46859 * 90.00683 * 3 2 1 31 31 H 1.09000 * 109.47092 * 209.99947 * 3 2 1 32 32 H 1.08995 * 109.47197 * 330.00247 * 3 2 1 33 33 H 1.08000 * 120.00450 * 359.97438 * 4 2 1 34 34 H 0.97002 * 119.99764 * 0.02562 * 11 9 7 35 35 H 1.09006 * 109.47339 * 299.99892 * 12 11 9 36 36 H 1.08998 * 109.47183 * 60.00609 * 12 11 9 37 37 H 0.97001 * 119.99711 * 0.02562 * 15 13 12 38 38 H 0.96999 * 120.00036 * 179.97438 * 19 18 16 39 39 H 1.09002 * 109.46996 * 134.41214 * 25 24 7 40 40 H 1.08997 * 109.47027 * 254.41202 * 25 24 7 41 41 H 1.09002 * 109.47189 * 14.41225 * 25 24 7 42 42 H 1.09003 * 109.46729 * 351.38245 * 26 24 7 43 43 H 1.08996 * 109.47025 * 111.37986 * 26 24 7 44 44 H 1.08996 * 109.47323 * 231.37825 * 26 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2604 1.3051 0.0000 4 6 2.1620 -1.1345 -0.0005 5 6 3.6690 -1.1344 -0.0011 6 1 4.1393 -0.2485 0.4257 7 6 4.3755 -2.4763 0.2015 8 1 5.3109 -2.4732 0.7612 9 6 3.5112 -3.6968 0.3870 10 8 3.5585 -4.6016 -0.4193 11 7 2.6857 -3.7829 1.4489 12 6 1.8459 -4.9696 1.6294 13 6 1.0228 -4.8165 2.8826 14 8 1.1272 -3.8145 3.5581 15 7 0.1700 -5.7926 3.2521 16 6 -0.5791 -5.6532 4.3918 17 1 -0.4855 -4.7613 4.9937 18 6 -1.4579 -6.6596 4.7731 19 7 -1.5713 -7.7450 4.0410 20 14 -2.4780 -6.4700 6.3263 21 1 -2.1678 -5.1662 6.9662 22 1 -3.9212 -6.5197 5.9799 23 1 -2.1566 -7.5727 7.2675 24 6 4.3750 -1.8125 -1.1770 25 6 3.4969 -2.4386 -2.2623 26 6 5.6873 -1.1950 -1.6643 27 1 -0.3634 1.0276 0.0005 28 1 -0.3633 -0.5139 0.8901 29 1 -0.3634 -0.5138 -0.8899 30 1 2.4422 1.6197 1.0277 31 1 3.2129 1.1748 -0.5138 32 1 1.6713 2.0647 -0.5138 33 1 1.6221 -2.0698 -0.0005 34 1 2.6477 -3.0591 2.0936 35 1 1.1831 -5.0797 0.7710 36 1 2.4787 -5.8529 1.7156 37 1 0.0864 -6.5937 2.7116 38 1 -2.1845 -8.4478 4.3073 39 1 2.9432 -1.6546 -2.7788 40 1 4.1257 -2.9702 -2.9766 41 1 2.7964 -3.1372 -1.8047 42 1 6.4139 -1.1978 -0.8518 43 1 6.0747 -1.7777 -2.5001 44 1 5.5083 -0.1698 -1.9883 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588077195.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:55:54 Heat of formation + Delta-G solvation = -52.329501 kcal Electronic energy + Delta-G solvation = -23903.381721 eV Core-core repulsion = 20435.219193 eV Total energy + Delta-G solvation = -3468.162528 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.44504 -38.50803 -37.54370 -35.55991 -34.42087 -33.63905 -31.38609 -30.01611 -28.14651 -27.86536 -27.52792 -26.74418 -24.64746 -22.85335 -20.12896 -19.68316 -19.01923 -18.09180 -17.91608 -16.65556 -15.90253 -15.61664 -15.32549 -14.85668 -14.64902 -14.29179 -14.15994 -14.03500 -13.86676 -13.58206 -13.34470 -13.11629 -12.76855 -12.45122 -12.29848 -12.24909 -12.17194 -11.91651 -11.85857 -11.64853 -11.62243 -11.36726 -11.14576 -10.84569 -10.51251 -10.41300 -10.32712 -9.90509 -9.64861 -9.58977 -8.72940 -8.62565 -8.46325 -8.10220 -6.51861 -3.93736 2.05317 2.84038 3.09872 3.21185 3.25217 3.31307 3.74069 3.76645 4.11293 4.45277 4.57506 4.70966 4.88585 4.94775 4.97770 5.02920 5.16637 5.22509 5.29279 5.48415 5.50262 5.52753 5.60808 5.66780 5.76589 5.79914 5.86259 5.88968 5.90035 5.91957 5.95907 6.00348 6.06535 6.07713 6.13517 6.37642 6.69033 6.72554 6.91464 7.45907 7.86509 7.92151 8.44301 8.50405 9.04568 9.39247 9.87220 10.65157 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.019334 B = 0.003571 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.905459 B = 7838.846022 C = 8738.527420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.122 4.122 3 C -0.119 4.119 4 C -0.139 4.139 5 C -0.098 4.098 6 H 0.116 0.884 7 C -0.172 4.172 8 H 0.131 0.869 9 C 0.544 3.456 10 O -0.544 6.544 11 N -0.702 5.702 12 C 0.107 3.893 13 C 0.429 3.571 14 O -0.595 6.595 15 N -0.550 5.550 16 C -0.304 4.304 17 H 0.106 0.894 18 C 0.025 3.975 19 N -0.895 5.895 20 Si 0.932 3.068 21 H -0.267 1.267 22 H -0.280 1.280 23 H -0.280 1.280 24 C -0.084 4.084 25 C -0.117 4.117 26 C -0.115 4.115 27 H 0.059 0.941 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.114 0.886 34 H 0.413 0.587 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.396 0.604 38 H 0.273 0.727 39 H 0.056 0.944 40 H 0.060 0.940 41 H 0.070 0.930 42 H 0.058 0.942 43 H 0.064 0.936 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.369 13.492 -10.546 19.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.122 4.122 3 C -0.175 4.175 4 C -0.157 4.157 5 C -0.117 4.117 6 H 0.134 0.866 7 C -0.193 4.193 8 H 0.149 0.851 9 C 0.330 3.670 10 O -0.422 6.422 11 N -0.356 5.356 12 C -0.020 4.020 13 C 0.214 3.786 14 O -0.481 6.481 15 N -0.185 5.185 16 C -0.433 4.433 17 H 0.124 0.876 18 C -0.177 4.177 19 N -0.535 5.535 20 Si 0.759 3.241 21 H -0.191 1.191 22 H -0.206 1.206 23 H -0.206 1.206 24 C -0.084 4.084 25 C -0.174 4.174 26 C -0.172 4.172 27 H 0.078 0.922 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.131 0.869 34 H 0.251 0.749 35 H 0.100 0.900 36 H 0.101 0.899 37 H 0.229 0.771 38 H 0.083 0.917 39 H 0.074 0.926 40 H 0.079 0.921 41 H 0.089 0.911 42 H 0.077 0.923 43 H 0.083 0.917 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 9.314 13.319 -10.616 19.412 hybrid contribution -0.620 -0.341 0.923 1.163 sum 8.694 12.978 -9.693 18.384 Atomic orbital electron populations 1.20830 0.92047 1.02177 1.02509 1.21503 0.95722 0.94821 1.00202 1.20902 0.99828 0.94865 1.01950 1.21996 0.92621 0.98140 1.02962 1.21514 0.92863 0.95001 1.02284 0.86573 1.22578 1.01529 0.92398 1.02812 0.85127 1.19506 0.79641 0.87062 0.80792 1.90677 1.67603 1.40104 1.43796 1.45790 1.41079 1.21920 1.26820 1.20960 0.94193 0.88804 0.98072 1.19749 0.84983 0.85795 0.88058 1.90504 1.70469 1.30791 1.56360 1.41805 1.35118 1.17745 1.23819 1.19775 1.17590 1.05031 1.00937 0.87643 1.25321 0.97980 0.94984 0.99463 1.69623 1.37517 1.07536 1.38833 0.85765 0.79059 0.78597 0.80719 1.19130 1.20618 1.20614 1.21592 0.97787 1.00048 0.89017 1.21403 0.99073 0.99912 0.96994 1.21374 0.94086 1.00333 1.01370 0.92179 0.91078 0.91741 0.91509 0.91647 0.92199 0.86854 0.74908 0.90009 0.89904 0.77079 0.91656 0.92555 0.92128 0.91138 0.92260 0.91736 0.91926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.33 10.05 36.01 0.36 -0.97 16 2 C -0.12 -1.41 6.05 -101.06 -0.61 -2.02 16 3 C -0.12 -1.08 9.21 36.00 0.33 -0.75 16 4 C -0.14 -1.77 7.48 -36.03 -0.27 -2.03 16 5 C -0.10 -1.09 4.75 -91.76 -0.44 -1.53 16 6 H 0.12 1.10 6.75 -51.93 -0.35 0.75 16 7 C -0.17 -2.15 5.78 -91.77 -0.53 -2.68 16 8 H 0.13 1.40 8.05 -51.93 -0.42 0.98 16 9 C 0.54 8.72 5.27 -10.99 -0.06 8.66 16 10 O -0.54 -10.20 15.19 5.55 0.08 -10.11 16 11 N -0.70 -11.87 4.61 -61.47 -0.28 -12.15 16 12 C 0.11 2.00 6.15 -5.19 -0.03 1.96 16 13 C 0.43 9.83 7.85 -10.98 -0.09 9.74 16 14 O -0.59 -15.21 15.24 5.55 0.08 -15.13 16 15 N -0.55 -13.64 5.29 -10.96 -0.06 -13.69 16 16 C -0.30 -8.25 9.68 -14.93 -0.14 -8.40 16 17 H 0.11 2.99 7.16 -52.49 -0.38 2.62 16 18 C 0.03 0.66 5.50 -17.47 -0.10 0.56 16 19 N -0.89 -23.91 13.05 55.50 0.72 -23.18 16 20 Si 0.93 20.53 29.55 -169.99 -5.02 15.51 16 21 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 22 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 23 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 24 C -0.08 -0.93 2.70 -154.50 -0.42 -1.34 16 25 C -0.12 -1.42 8.29 37.16 0.31 -1.12 16 26 C -0.11 -0.96 9.85 37.16 0.37 -0.60 16 27 H 0.06 0.57 7.94 -51.93 -0.41 0.16 16 28 H 0.07 0.90 8.14 -51.92 -0.42 0.47 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.55 6.49 -51.93 -0.34 0.21 16 32 H 0.06 0.48 8.05 -51.93 -0.42 0.06 16 33 H 0.11 1.69 6.60 -52.49 -0.35 1.35 16 34 H 0.41 7.07 7.40 -40.82 -0.30 6.77 16 35 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 36 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 37 H 0.40 9.46 7.90 -40.82 -0.32 9.13 16 38 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.06 0.70 8.02 -51.93 -0.42 0.29 16 41 H 0.07 1.04 5.48 -51.93 -0.28 0.76 16 42 H 0.06 0.45 7.90 -51.93 -0.41 0.04 16 43 H 0.06 0.52 7.99 -51.93 -0.42 0.11 16 44 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 363.89 15.07 5.48 5.48 Total: -1.00 -30.42 363.89 -7.20 -37.62 By element: Atomic # 1 Polarization: 23.06 SS G_CDS: -6.90 Total: 16.16 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: -1.31 Total: -0.51 kcal Atomic # 7 Polarization: -49.41 SS G_CDS: 0.38 Total: -49.03 kcal Atomic # 8 Polarization: -25.41 SS G_CDS: 0.17 Total: -25.24 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.42 -7.20 -37.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588077195.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.705 kcal (2) G-P(sol) polarization free energy of solvation -30.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds