Wall clock time and date at job start Tue Mar 31 2020 02:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.50692 * 119.99872 * 2 1 4 4 C 1.31002 * 119.99689 * 179.72444 * 2 1 3 5 5 C 1.50700 * 119.99508 * 184.68737 * 4 2 1 6 6 H 1.08996 * 115.55006 * 36.37034 * 5 4 2 7 7 C 1.53000 * 117.49875 * 250.70117 * 5 4 2 8 8 H 1.09005 * 117.50111 * 145.01767 * 7 5 4 9 9 C 1.50700 * 117.49853 * 0.02682 * 7 5 4 10 10 O 1.21284 * 120.00400 * 246.58358 * 9 7 5 11 11 N 1.34778 * 120.00395 * 66.58216 * 9 7 5 12 12 C 1.46499 * 120.00501 * 180.02562 * 11 9 7 13 13 C 1.50698 * 109.47152 * 179.97438 * 12 11 9 14 14 O 1.21287 * 120.00445 * 0.02562 * 13 12 11 15 15 N 1.34784 * 119.99714 * 179.97438 * 13 12 11 16 16 C 1.37093 * 119.99626 * 179.97438 * 15 13 12 17 17 H 1.08005 * 120.00338 * 0.02562 * 16 15 13 18 18 C 1.38955 * 119.99882 * 180.02562 * 16 15 13 19 19 N 1.31407 * 119.99808 * 179.97438 * 18 16 15 20 20 Si 1.86798 * 119.99877 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.47017 * 89.99644 * 20 18 16 22 22 H 1.48495 * 109.47044 * 209.99756 * 20 18 16 23 23 H 1.48503 * 109.47088 * 330.00128 * 20 18 16 24 24 C 1.52995 * 60.00274 * 252.50925 * 7 5 4 25 25 C 1.52994 * 117.50286 * 252.50681 * 24 7 5 26 26 C 1.52998 * 117.49559 * 107.48495 * 24 7 5 27 27 H 1.09000 * 109.47151 * 270.27363 * 1 2 3 28 28 H 1.08994 * 109.46872 * 30.27713 * 1 2 3 29 29 H 1.08998 * 109.46983 * 150.27667 * 1 2 3 30 30 H 1.09004 * 109.47537 * 187.08877 * 3 2 1 31 31 H 1.09003 * 109.47138 * 307.08278 * 3 2 1 32 32 H 1.08998 * 109.47463 * 67.08250 * 3 2 1 33 33 H 1.07997 * 120.00576 * 4.68792 * 4 2 1 34 34 H 0.97002 * 119.99820 * 0.02562 * 11 9 7 35 35 H 1.09002 * 109.46855 * 300.00169 * 12 11 9 36 36 H 1.08998 * 109.47080 * 59.99475 * 12 11 9 37 37 H 0.96994 * 120.00190 * 0.02562 * 15 13 12 38 38 H 0.97006 * 119.99569 * 179.97438 * 19 18 16 39 39 H 1.09005 * 109.47017 * 128.61527 * 25 24 7 40 40 H 1.08993 * 109.47267 * 248.62312 * 25 24 7 41 41 H 1.09000 * 109.46881 * 8.62251 * 25 24 7 42 42 H 1.09000 * 109.47979 * 344.01558 * 26 24 7 43 43 H 1.09002 * 109.47187 * 104.01660 * 26 24 7 44 44 H 1.09005 * 109.47388 * 224.01367 * 26 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3050 0.0000 4 6 2.1620 -1.1345 0.0055 5 6 3.6652 -1.1362 0.1121 6 1 4.0917 -0.3664 0.7552 7 6 4.4612 -1.5390 -1.1309 8 1 5.4116 -1.0344 -1.3053 9 6 3.6820 -1.9031 -2.3683 10 8 3.7040 -3.0417 -2.7857 11 7 2.9606 -0.9636 -3.0113 12 6 2.2027 -1.3178 -4.2140 13 6 1.4886 -0.0973 -4.7352 14 8 1.6019 0.9640 -4.1591 15 7 0.7247 -0.1850 -5.8422 16 6 0.0746 0.9251 -6.3160 17 1 0.1749 1.8700 -5.8026 18 6 -0.7133 0.8347 -7.4570 19 7 -1.3368 1.8986 -7.9109 20 14 -0.8874 -0.7997 -8.3447 21 1 -2.0449 -1.5447 -7.7875 22 1 -1.1066 -0.5554 -9.7929 23 1 0.3508 -1.5981 -8.1591 24 6 4.3754 -2.4905 0.0641 25 6 5.6301 -2.6612 0.9228 26 6 3.5050 -3.7395 -0.0886 27 1 -0.3633 0.0049 1.0276 28 1 -0.3633 0.8875 -0.5181 29 1 -0.3633 -0.8924 -0.5095 30 1 3.3254 1.1099 -0.1268 31 1 1.9055 1.9295 -0.8199 32 1 2.0956 1.8198 0.9465 33 1 1.6248 -2.0686 -0.0665 34 1 2.9432 -0.0529 -2.6778 35 1 2.8854 -1.6930 -4.9763 36 1 1.4722 -2.0889 -3.9692 37 1 0.6343 -1.0336 -6.3031 38 1 -1.8866 1.8356 -8.7076 39 1 5.3765 -2.5058 1.9715 40 1 6.0271 -3.6675 0.7901 41 1 6.3806 -1.9315 0.6186 42 1 2.8450 -3.6198 -0.9477 43 1 4.1427 -4.6106 -0.2390 44 1 2.9072 -3.8781 0.8123 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588077197.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:55:58 Heat of formation + Delta-G solvation = -44.394628 kcal Electronic energy + Delta-G solvation = -24279.719906 eV Core-core repulsion = 20811.901461 eV Total energy + Delta-G solvation = -3467.818446 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.46653 -38.65783 -37.58171 -35.55797 -34.45424 -33.68404 -31.80084 -29.99262 -28.18092 -27.91917 -27.52634 -26.72619 -24.53703 -22.84090 -20.15609 -19.68363 -19.15133 -18.44755 -17.87538 -16.62079 -15.92624 -15.73669 -15.27421 -14.99512 -14.93143 -14.48486 -14.24509 -13.89639 -13.62494 -13.26585 -13.18543 -13.15038 -12.91280 -12.48101 -12.36490 -12.29570 -12.23410 -12.16847 -12.00696 -11.80187 -11.42985 -11.40499 -11.23843 -10.77719 -10.64945 -10.51798 -10.06850 -9.87247 -9.69576 -9.55018 -8.79798 -8.75550 -8.49182 -8.30317 -6.41130 -3.93394 2.11534 2.80186 2.99050 3.03561 3.11483 3.24139 3.57218 3.69126 4.03152 4.46935 4.53309 4.58929 4.71758 4.96509 5.05027 5.08836 5.13767 5.22989 5.29074 5.49880 5.51968 5.61488 5.64735 5.70472 5.77843 5.79366 5.81342 5.82882 5.84855 5.87792 5.89591 5.99901 6.05768 6.12745 6.16445 6.35386 6.65339 6.71224 6.98376 7.44196 7.82723 8.00399 8.41478 8.49431 8.81653 9.29913 9.63964 10.71123 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.019866 B = 0.004008 C = 0.003614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.108238 B = 6985.011129 C = 7745.812886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.103 4.103 3 C -0.127 4.127 4 C -0.155 4.155 5 C -0.092 4.092 6 H 0.116 0.884 7 C -0.172 4.172 8 H 0.129 0.871 9 C 0.547 3.453 10 O -0.546 6.546 11 N -0.699 5.699 12 C 0.105 3.895 13 C 0.440 3.560 14 O -0.575 6.575 15 N -0.578 5.578 16 C -0.309 4.309 17 H 0.121 0.879 18 C 0.045 3.955 19 N -0.875 5.875 20 Si 0.878 3.122 21 H -0.269 1.269 22 H -0.275 1.275 23 H -0.267 1.267 24 C -0.088 4.088 25 C -0.114 4.114 26 C -0.119 4.119 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.062 0.938 33 H 0.111 0.889 34 H 0.412 0.588 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.374 0.626 38 H 0.275 0.725 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.058 0.942 42 H 0.072 0.928 43 H 0.060 0.940 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.081 -8.025 16.376 20.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.103 4.103 3 C -0.184 4.184 4 C -0.173 4.173 5 C -0.111 4.111 6 H 0.134 0.866 7 C -0.193 4.193 8 H 0.147 0.853 9 C 0.333 3.667 10 O -0.424 6.424 11 N -0.353 5.353 12 C -0.022 4.022 13 C 0.225 3.775 14 O -0.459 6.459 15 N -0.216 5.216 16 C -0.437 4.437 17 H 0.139 0.861 18 C -0.159 4.159 19 N -0.514 5.514 20 Si 0.704 3.296 21 H -0.194 1.194 22 H -0.200 1.200 23 H -0.193 1.193 24 C -0.089 4.089 25 C -0.171 4.171 26 C -0.176 4.176 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.081 0.919 33 H 0.129 0.871 34 H 0.251 0.749 35 H 0.101 0.899 36 H 0.100 0.900 37 H 0.207 0.793 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.077 0.923 42 H 0.091 0.909 43 H 0.079 0.921 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 8.996 -7.993 16.260 20.229 hybrid contribution -0.267 -0.700 -0.911 1.180 sum 8.728 -8.694 15.349 19.681 Atomic orbital electron populations 1.20811 0.92130 1.03088 1.01508 1.21571 0.95775 0.95014 0.97949 1.20979 0.99865 0.95250 1.02272 1.21902 0.92574 0.97729 1.05056 1.21433 0.92404 0.98494 0.98723 0.86593 1.22594 1.01407 1.06567 0.88765 0.85291 1.19493 0.78819 0.84776 0.83637 1.90661 1.64201 1.20222 1.67349 1.45680 1.48008 1.14088 1.27494 1.20965 0.96056 0.96990 0.88232 1.19635 0.84459 0.89688 0.83670 1.90533 1.66147 1.29794 1.59453 1.42128 1.43446 1.11483 1.24504 1.19430 1.24140 0.90493 1.09665 0.86098 1.25054 0.96463 0.97585 0.96784 1.69618 1.29977 1.28302 1.23517 0.86685 0.79028 0.83407 0.80460 1.19421 1.19990 1.19265 1.21558 0.98431 0.91829 0.97085 1.21360 0.94764 1.02271 0.98747 1.21438 0.99193 0.95009 1.01937 0.91731 0.91343 0.91998 0.91696 0.90557 0.91945 0.87149 0.74944 0.89885 0.89968 0.79319 0.91416 0.91890 0.91832 0.92319 0.90914 0.92113 0.92625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.43 10.03 36.01 0.36 -1.07 16 2 C -0.10 -1.26 6.05 -101.07 -0.61 -1.87 16 3 C -0.13 -1.44 9.80 36.00 0.35 -1.08 16 4 C -0.15 -1.87 7.54 -36.03 -0.27 -2.14 16 5 C -0.09 -0.99 4.41 -91.77 -0.41 -1.39 16 6 H 0.12 1.07 7.05 -51.93 -0.37 0.70 16 7 C -0.17 -2.07 5.78 -91.77 -0.53 -2.60 16 8 H 0.13 1.34 8.05 -51.93 -0.42 0.92 16 9 C 0.55 8.46 5.70 -10.98 -0.06 8.40 16 10 O -0.55 -9.85 14.91 5.55 0.08 -9.77 16 11 N -0.70 -11.38 5.27 -61.47 -0.32 -11.71 16 12 C 0.11 1.85 6.15 -5.19 -0.03 1.82 16 13 C 0.44 9.61 7.85 -10.98 -0.09 9.53 16 14 O -0.58 -14.26 15.24 5.55 0.08 -14.18 16 15 N -0.58 -13.39 5.09 -10.96 -0.06 -13.45 16 16 C -0.31 -8.46 10.16 -14.93 -0.15 -8.61 16 17 H 0.12 3.77 7.39 -52.48 -0.39 3.38 16 18 C 0.05 1.21 5.50 -17.47 -0.10 1.11 16 19 N -0.88 -24.91 13.96 55.50 0.77 -24.14 16 20 Si 0.88 19.02 27.74 -169.99 -4.71 14.31 16 21 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 22 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 23 H -0.27 -5.33 6.52 56.52 0.37 -4.96 16 24 C -0.09 -0.94 2.70 -154.51 -0.42 -1.36 16 25 C -0.11 -0.94 9.85 37.15 0.37 -0.57 16 26 C -0.12 -1.38 7.81 37.16 0.29 -1.09 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.07 0.88 8.12 -51.93 -0.42 0.46 16 29 H 0.06 0.77 8.04 -51.93 -0.42 0.35 16 30 H 0.06 0.67 5.81 -51.93 -0.30 0.37 16 31 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.11 1.40 6.75 -52.49 -0.35 1.05 16 34 H 0.41 6.82 7.44 -40.82 -0.30 6.52 16 35 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 36 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 37 H 0.37 7.70 5.76 -40.82 -0.24 7.47 16 38 H 0.28 7.23 8.31 -40.82 -0.34 6.90 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.06 0.50 8.01 -51.93 -0.42 0.09 16 41 H 0.06 0.43 7.90 -51.93 -0.41 0.02 16 42 H 0.07 1.02 5.07 -51.93 -0.26 0.76 16 43 H 0.06 0.68 8.05 -51.93 -0.42 0.27 16 44 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 361.01 15.07 5.44 5.44 Total: -1.00 -31.12 361.01 -6.85 -37.96 By element: Atomic # 1 Polarization: 23.31 SS G_CDS: -6.84 Total: 16.47 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: -1.29 Total: -0.94 kcal Atomic # 7 Polarization: -49.69 SS G_CDS: 0.39 Total: -49.29 kcal Atomic # 8 Polarization: -24.11 SS G_CDS: 0.17 Total: -23.95 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -4.71 Total: 14.31 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.12 -6.85 -37.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588077197.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.431 kcal (2) G-P(sol) polarization free energy of solvation -31.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds