Wall clock time and date at job start Tue Mar 31 2020 02:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.50692 * 119.99872 * 2 1 4 4 C 1.31002 * 119.99689 * 179.72444 * 2 1 3 5 5 C 1.50700 * 119.99508 * 184.68737 * 4 2 1 6 6 H 1.08996 * 115.55006 * 36.37034 * 5 4 2 7 7 C 1.53000 * 117.49875 * 250.70117 * 5 4 2 8 8 H 1.09005 * 117.50111 * 145.01767 * 7 5 4 9 9 C 1.50700 * 117.49853 * 0.02682 * 7 5 4 10 10 O 1.21284 * 120.00400 * 246.58358 * 9 7 5 11 11 N 1.34778 * 120.00395 * 66.58216 * 9 7 5 12 12 C 1.46499 * 120.00501 * 180.02562 * 11 9 7 13 13 C 1.50698 * 109.47152 * 179.97438 * 12 11 9 14 14 O 1.21287 * 120.00445 * 0.02562 * 13 12 11 15 15 N 1.34784 * 119.99714 * 179.97438 * 13 12 11 16 16 C 1.37093 * 119.99626 * 179.97438 * 15 13 12 17 17 H 1.08005 * 120.00338 * 0.02562 * 16 15 13 18 18 C 1.38955 * 119.99882 * 180.02562 * 16 15 13 19 19 N 1.31407 * 119.99808 * 179.97438 * 18 16 15 20 20 Si 1.86798 * 119.99877 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.47017 * 89.99644 * 20 18 16 22 22 H 1.48495 * 109.47044 * 209.99756 * 20 18 16 23 23 H 1.48503 * 109.47088 * 330.00128 * 20 18 16 24 24 C 1.52995 * 60.00274 * 252.50925 * 7 5 4 25 25 C 1.52994 * 117.50286 * 252.50681 * 24 7 5 26 26 C 1.52998 * 117.49559 * 107.48495 * 24 7 5 27 27 H 1.09000 * 109.47151 * 270.27363 * 1 2 3 28 28 H 1.08994 * 109.46872 * 30.27713 * 1 2 3 29 29 H 1.08998 * 109.46983 * 150.27667 * 1 2 3 30 30 H 1.09004 * 109.47537 * 187.08877 * 3 2 1 31 31 H 1.09003 * 109.47138 * 307.08278 * 3 2 1 32 32 H 1.08998 * 109.47463 * 67.08250 * 3 2 1 33 33 H 1.07997 * 120.00576 * 4.68792 * 4 2 1 34 34 H 0.97002 * 119.99820 * 0.02562 * 11 9 7 35 35 H 1.09002 * 109.46855 * 300.00169 * 12 11 9 36 36 H 1.08998 * 109.47080 * 59.99475 * 12 11 9 37 37 H 0.96994 * 120.00190 * 0.02562 * 15 13 12 38 38 H 0.97006 * 119.99569 * 179.97438 * 19 18 16 39 39 H 1.09005 * 109.47017 * 128.61527 * 25 24 7 40 40 H 1.08993 * 109.47267 * 248.62312 * 25 24 7 41 41 H 1.09000 * 109.46881 * 8.62251 * 25 24 7 42 42 H 1.09000 * 109.47979 * 344.01558 * 26 24 7 43 43 H 1.09002 * 109.47187 * 104.01660 * 26 24 7 44 44 H 1.09005 * 109.47388 * 224.01367 * 26 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3050 0.0000 4 6 2.1620 -1.1345 0.0055 5 6 3.6652 -1.1362 0.1121 6 1 4.0917 -0.3664 0.7552 7 6 4.4612 -1.5390 -1.1309 8 1 5.4116 -1.0344 -1.3053 9 6 3.6820 -1.9031 -2.3683 10 8 3.7040 -3.0417 -2.7857 11 7 2.9606 -0.9636 -3.0113 12 6 2.2027 -1.3178 -4.2140 13 6 1.4886 -0.0973 -4.7352 14 8 1.6019 0.9640 -4.1591 15 7 0.7247 -0.1850 -5.8422 16 6 0.0746 0.9251 -6.3160 17 1 0.1749 1.8700 -5.8026 18 6 -0.7133 0.8347 -7.4570 19 7 -1.3368 1.8986 -7.9109 20 14 -0.8874 -0.7997 -8.3447 21 1 -2.0449 -1.5447 -7.7875 22 1 -1.1066 -0.5554 -9.7929 23 1 0.3508 -1.5981 -8.1591 24 6 4.3754 -2.4905 0.0641 25 6 5.6301 -2.6612 0.9228 26 6 3.5050 -3.7395 -0.0886 27 1 -0.3633 0.0049 1.0276 28 1 -0.3633 0.8875 -0.5181 29 1 -0.3633 -0.8924 -0.5095 30 1 3.3254 1.1099 -0.1268 31 1 1.9055 1.9295 -0.8199 32 1 2.0956 1.8198 0.9465 33 1 1.6248 -2.0686 -0.0665 34 1 2.9432 -0.0529 -2.6778 35 1 2.8854 -1.6930 -4.9763 36 1 1.4722 -2.0889 -3.9692 37 1 0.6343 -1.0336 -6.3031 38 1 -1.8866 1.8356 -8.7076 39 1 5.3765 -2.5058 1.9715 40 1 6.0271 -3.6675 0.7901 41 1 6.3806 -1.9315 0.6186 42 1 2.8450 -3.6198 -0.9477 43 1 4.1427 -4.6106 -0.2390 44 1 2.9072 -3.8781 0.8123 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588077197.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:55:57 Heat of formation + Delta-G solvation = -65.008674 kcal Electronic energy + Delta-G solvation = -24280.613799 eV Core-core repulsion = 20811.901461 eV Total energy + Delta-G solvation = -3468.712338 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.58562 -40.35303 -38.78423 -36.54452 -36.21164 -35.23953 -33.83259 -30.92268 -29.52933 -28.76682 -28.54711 -27.71919 -26.30891 -23.99246 -21.47227 -21.29391 -20.61886 -19.90087 -18.90352 -17.93738 -17.32953 -17.02485 -16.84634 -16.53194 -16.24068 -15.69951 -15.51677 -15.05233 -14.86796 -14.60829 -14.40472 -14.25650 -14.08464 -14.03882 -13.79286 -13.50131 -13.23214 -13.16887 -13.00932 -12.94493 -12.76889 -12.45754 -12.36561 -12.26353 -12.01896 -11.66356 -11.58603 -11.40301 -10.95546 -10.65568 -10.52436 -10.33067 -10.10447 -9.44107 -8.46137 -6.07460 1.16269 1.29345 1.32170 1.41793 1.60087 1.79852 2.00562 2.19113 2.75861 2.89350 3.10138 3.58385 3.65882 3.78726 3.96636 4.09283 4.13033 4.18316 4.28818 4.37232 4.39081 4.42778 4.68158 4.73914 4.76990 4.82576 4.86893 4.95882 5.02575 5.05985 5.10302 5.10669 5.19991 5.21583 5.26843 5.34200 5.48151 5.52008 5.75898 5.87897 6.03021 6.47927 6.54422 6.78140 7.18803 7.30238 7.77818 8.70332 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.019866 B = 0.004008 C = 0.003614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.108238 B = 6985.011129 C = 7745.812886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.114 4.114 3 C -0.124 4.124 4 C -0.156 4.156 5 C -0.084 4.084 6 H 0.139 0.861 7 C -0.184 4.184 8 H 0.151 0.849 9 C 0.548 3.452 10 O -0.572 6.572 11 N -0.703 5.703 12 C 0.116 3.884 13 C 0.447 3.553 14 O -0.607 6.607 15 N -0.580 5.580 16 C -0.328 4.328 17 H 0.064 0.936 18 C -0.007 4.007 19 N -0.926 5.926 20 Si 0.956 3.044 21 H -0.257 1.257 22 H -0.273 1.273 23 H -0.235 1.235 24 C -0.082 4.082 25 C -0.111 4.111 26 C -0.119 4.119 27 H 0.084 0.916 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.077 0.923 31 H 0.051 0.949 32 H 0.080 0.920 33 H 0.101 0.899 34 H 0.411 0.589 35 H 0.101 0.899 36 H 0.098 0.902 37 H 0.390 0.610 38 H 0.281 0.719 39 H 0.077 0.923 40 H 0.065 0.935 41 H 0.070 0.930 42 H 0.045 0.955 43 H 0.061 0.939 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.636 -10.319 17.394 22.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.114 4.114 3 C -0.180 4.180 4 C -0.174 4.174 5 C -0.102 4.102 6 H 0.157 0.843 7 C -0.205 4.205 8 H 0.168 0.832 9 C 0.336 3.664 10 O -0.452 6.452 11 N -0.356 5.356 12 C -0.012 4.012 13 C 0.234 3.766 14 O -0.492 6.492 15 N -0.220 5.220 16 C -0.457 4.457 17 H 0.083 0.917 18 C -0.207 4.207 19 N -0.566 5.566 20 Si 0.777 3.223 21 H -0.182 1.182 22 H -0.198 1.198 23 H -0.158 1.158 24 C -0.083 4.083 25 C -0.168 4.168 26 C -0.176 4.176 27 H 0.103 0.897 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.095 0.905 31 H 0.070 0.930 32 H 0.098 0.902 33 H 0.119 0.881 34 H 0.249 0.751 35 H 0.119 0.881 36 H 0.116 0.884 37 H 0.226 0.774 38 H 0.090 0.910 39 H 0.096 0.904 40 H 0.084 0.916 41 H 0.089 0.911 42 H 0.064 0.936 43 H 0.080 0.920 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 10.571 -10.297 17.302 22.741 hybrid contribution -0.760 0.081 -1.134 1.368 sum 9.812 -10.216 16.167 21.495 Atomic orbital electron populations 1.20821 0.92542 1.01806 1.02451 1.21697 0.95778 0.95623 0.98346 1.20958 1.00329 0.94493 1.02261 1.21941 0.93587 0.97132 1.04745 1.21509 0.91294 0.99369 0.98027 0.84341 1.22684 1.01942 1.08307 0.87568 0.83181 1.20058 0.78212 0.84013 0.84158 1.90646 1.65071 1.21214 1.68270 1.45757 1.48259 1.14315 1.27255 1.20865 0.96484 0.94579 0.89262 1.20444 0.83113 0.90562 0.82494 1.90525 1.66780 1.31754 1.60150 1.41938 1.43793 1.11013 1.25233 1.19019 1.26184 0.90073 1.10471 0.91745 1.26021 0.95187 1.02368 0.97111 1.69777 1.30968 1.31415 1.24398 0.85477 0.80634 0.77758 0.78464 1.18161 1.19766 1.15834 1.21706 0.99200 0.91107 0.96267 1.21386 0.93615 1.02867 0.98970 1.21410 0.99122 0.95744 1.01312 0.89741 0.92912 0.92899 0.90454 0.92977 0.90170 0.88142 0.75090 0.88130 0.88438 0.77413 0.90955 0.90449 0.91597 0.91118 0.93647 0.91994 0.91383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.90 10.03 71.24 0.71 -2.19 16 2 C -0.11 -2.72 6.05 -16.49 -0.10 -2.82 16 3 C -0.12 -2.69 9.80 71.23 0.70 -1.99 16 4 C -0.16 -3.57 7.54 25.64 0.19 -3.38 16 5 C -0.08 -1.58 4.41 -11.54 -0.05 -1.63 16 6 H 0.14 2.03 7.05 -2.39 -0.02 2.01 16 7 C -0.18 -4.00 5.78 -11.54 -0.07 -4.07 16 8 H 0.15 2.63 8.05 -2.38 -0.02 2.61 16 9 C 0.55 16.15 5.70 87.66 0.50 16.65 16 10 O -0.57 -19.87 14.91 -3.04 -0.05 -19.92 16 11 N -0.70 -22.20 5.27 -466.79 -2.46 -24.66 16 12 C 0.12 3.92 6.15 85.63 0.53 4.45 16 13 C 0.45 19.59 7.85 87.66 0.69 20.28 16 14 O -0.61 -31.01 15.24 -3.05 -0.05 -31.06 16 15 N -0.58 -26.81 5.09 -306.98 -1.56 -28.38 16 16 C -0.33 -18.63 10.16 84.04 0.85 -17.78 16 17 H 0.06 4.31 7.39 -2.91 -0.02 4.28 16 18 C -0.01 -0.37 5.50 84.93 0.47 0.09 16 19 N -0.93 -54.38 13.96 21.66 0.30 -54.08 16 20 Si 0.96 38.38 27.74 68.60 1.90 40.28 16 21 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 22 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 23 H -0.23 -8.12 6.52 99.48 0.65 -7.47 16 24 C -0.08 -1.54 2.70 -52.18 -0.14 -1.68 16 25 C -0.11 -1.43 9.85 71.98 0.71 -0.72 16 26 C -0.12 -2.57 7.81 71.98 0.56 -2.00 16 27 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.05 1.42 8.12 -2.39 -0.02 1.40 16 29 H 0.05 1.35 8.04 -2.39 -0.02 1.33 16 30 H 0.08 1.45 5.81 -2.39 -0.01 1.44 16 31 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.10 2.49 6.75 -2.91 -0.02 2.48 16 34 H 0.41 13.44 7.44 -92.71 -0.69 12.75 16 35 H 0.10 3.12 8.14 -2.39 -0.02 3.10 16 36 H 0.10 3.06 8.14 -2.39 -0.02 3.04 16 37 H 0.39 15.32 5.76 -92.71 -0.53 14.78 16 38 H 0.28 15.09 8.31 -92.70 -0.77 14.32 16 39 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 40 H 0.07 0.83 8.01 -2.39 -0.02 0.81 16 41 H 0.07 0.76 7.90 -2.39 -0.02 0.74 16 42 H 0.04 1.24 5.07 -2.39 -0.01 1.22 16 43 H 0.06 1.29 8.05 -2.39 -0.02 1.28 16 44 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 Total: -1.00 -70.71 361.01 3.38 -67.33 By element: Atomic # 1 Polarization: 47.54 SS G_CDS: -0.27 Total: 47.28 kcal Atomic # 6 Polarization: -2.35 SS G_CDS: 5.56 Total: 3.20 kcal Atomic # 7 Polarization: -103.40 SS G_CDS: -3.72 Total: -107.12 kcal Atomic # 8 Polarization: -50.88 SS G_CDS: -0.09 Total: -50.97 kcal Atomic # 14 Polarization: 38.38 SS G_CDS: 1.90 Total: 40.28 kcal Total: -70.71 3.38 -67.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588077197.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.322 kcal (2) G-P(sol) polarization free energy of solvation -70.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds