Wall clock time and date at job start Tue Mar 31 2020 03:31:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47353 * 2 1 4 4 C 1.53005 * 109.47212 * 240.00220 * 2 1 3 5 5 C 1.50697 * 109.47289 * 120.00160 * 2 1 3 6 6 N 1.30714 * 125.52919 * 0.02562 * 5 2 1 7 7 N 1.40437 * 106.79630 * 179.73521 * 6 5 2 8 8 H 0.97001 * 126.82577 * 179.97438 * 7 6 5 9 9 C 1.34437 * 106.35285 * 0.02562 * 7 6 5 10 10 C 1.50703 * 125.95709 * 180.02562 * 9 7 6 11 11 N 1.46897 * 109.47201 * 94.97185 * 10 9 7 12 12 C 1.47899 * 111.00255 * 69.87126 * 11 10 9 13 13 C 1.53993 * 107.06173 * 214.15400 * 12 11 10 14 14 C 1.54598 * 105.13356 * 1.22659 * 13 12 11 15 15 O 1.42904 * 110.72116 * 263.59737 * 14 13 12 16 16 C 1.50696 * 110.72295 * 140.49675 * 14 13 12 17 17 H 1.08003 * 119.99704 * 241.45084 * 16 14 13 18 18 C 1.37881 * 120.00484 * 61.44885 * 16 14 13 19 19 N 1.31511 * 119.99342 * 0.02562 * 18 16 14 20 20 Si 1.86796 * 120.00177 * 179.97438 * 18 16 14 21 21 H 1.48508 * 109.46978 * 60.00106 * 20 18 16 22 22 H 1.48496 * 109.47018 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47476 * 300.00211 * 20 18 16 24 24 C 1.48530 * 111.00032 * 312.47248 * 11 10 9 25 25 N 1.30832 * 108.07767 * 359.97438 * 9 7 6 26 26 H 1.08997 * 109.47011 * 299.99682 * 1 2 3 27 27 H 1.08998 * 109.47502 * 59.99904 * 1 2 3 28 28 H 1.09004 * 109.46846 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47768 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.47108 * 300.00070 * 3 2 1 31 31 H 1.08997 * 109.46804 * 59.99632 * 3 2 1 32 32 H 1.09004 * 109.46861 * 299.99557 * 4 2 1 33 33 H 1.08998 * 109.46989 * 59.99561 * 4 2 1 34 34 H 1.09002 * 109.46986 * 179.97438 * 4 2 1 35 35 H 1.09005 * 109.46727 * 214.96938 * 10 9 7 36 36 H 1.08997 * 109.47546 * 334.96213 * 10 9 7 37 37 H 1.09001 * 109.91913 * 333.50878 * 12 11 10 38 38 H 1.08999 * 109.92136 * 94.79901 * 12 11 10 39 39 H 1.09001 * 110.30877 * 120.13446 * 13 12 11 40 40 H 1.08997 * 110.31109 * 242.21169 * 13 12 11 41 41 H 0.96702 * 114.00242 * 298.54903 * 15 14 13 42 42 H 0.97009 * 119.99698 * 180.02562 * 19 18 16 43 43 H 1.09004 * 110.66583 * 278.15528 * 24 11 10 44 44 H 1.08998 * 110.66627 * 41.28559 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0323 -0.7104 1.2304 6 7 1.2826 -1.2462 2.1575 7 7 2.1512 -1.8032 3.1101 8 1 1.9006 -2.2731 3.9210 9 6 3.3989 -1.5550 2.6757 10 6 4.6743 -1.9623 3.3675 11 7 5.1483 -3.2362 2.8103 12 6 5.6354 -3.0603 1.4250 13 6 5.2921 -4.3508 0.6581 14 6 4.5578 -5.2460 1.6826 15 8 5.4633 -6.1735 2.2841 16 6 3.4095 -5.9716 1.0302 17 1 2.3994 -5.8027 1.3730 18 6 3.6483 -6.8512 -0.0045 19 7 4.8784 -7.0572 -0.4215 20 14 2.2249 -7.7512 -0.8126 21 1 1.2799 -6.7632 -1.3926 22 1 2.7436 -8.6311 -1.8905 23 1 1.5193 -8.5743 0.2023 24 6 4.0433 -4.2254 2.7285 25 7 3.3128 -0.8990 1.5470 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 3.1299 1.4426 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9563 0.8899 32 1 1.6767 -1.7489 -1.2493 33 1 1.6766 -0.2074 -2.1392 34 1 3.1300 -0.7208 -1.2495 35 1 5.4323 -1.1941 3.2139 36 1 4.4872 -2.0797 4.4349 37 1 5.1368 -2.2091 0.9613 38 1 6.7144 -2.9058 1.4275 39 1 4.6390 -4.1273 -0.1855 40 1 6.2031 -4.8387 0.3116 41 1 5.8735 -6.7854 1.6577 42 1 5.0464 -7.6758 -1.1497 43 1 3.8872 -4.7085 3.6931 44 1 3.1257 -3.7494 2.3826 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592150162.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:38 Heat of formation + Delta-G solvation = 32.733637 kcal Electronic energy + Delta-G solvation = -25343.076592 eV Core-core repulsion = 21910.895430 eV Total energy + Delta-G solvation = -3432.181162 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.10288 -38.45022 -36.80856 -34.92084 -32.12999 -32.02821 -31.52943 -29.42535 -28.05661 -27.25588 -27.17144 -25.94581 -24.07067 -23.06671 -21.14379 -20.04601 -19.51296 -18.76433 -17.48519 -17.12756 -15.73094 -15.39587 -15.01256 -14.87084 -14.53623 -14.37081 -13.81323 -13.70241 -13.55887 -13.25151 -12.43430 -12.38884 -12.24082 -12.12950 -11.81494 -11.70793 -11.59571 -11.36078 -11.28785 -11.09499 -10.99184 -10.93344 -10.89457 -10.67041 -10.49680 -10.37167 -9.92109 -9.78691 -9.61232 -9.29026 -9.19494 -8.60309 -8.16195 -7.95316 -6.21881 -4.29962 1.80083 2.82181 3.08952 3.22623 3.27343 3.30548 4.01797 4.28199 4.54351 4.61799 4.85983 5.00201 5.05790 5.10121 5.23273 5.48900 5.64169 5.66836 5.68235 5.73310 5.80320 5.90019 5.91739 5.95289 5.97333 6.06193 6.11133 6.20394 6.35714 6.43177 6.47061 6.50637 6.51617 6.68064 6.81822 7.03874 7.22068 7.31915 7.44674 7.50605 7.54272 7.80097 8.14948 8.32371 8.71032 9.38492 9.52479 10.85188 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.014365 B = 0.005939 C = 0.004869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.694439 B = 4713.778486 C = 5749.499641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.028 3.972 3 C -0.133 4.133 4 C -0.137 4.137 5 C 0.236 3.764 6 N -0.316 5.316 7 N -0.479 5.479 8 H 0.438 0.562 9 C 0.264 3.736 10 C 0.117 3.883 11 N -0.493 5.493 12 C 0.022 3.978 13 C -0.126 4.126 14 C 0.260 3.740 15 O -0.581 6.581 16 C -0.537 4.537 17 H 0.055 0.945 18 C 0.074 3.926 19 N -0.892 5.892 20 Si 0.897 3.103 21 H -0.277 1.277 22 H -0.285 1.285 23 H -0.275 1.275 24 C 0.042 3.958 25 N -0.527 5.527 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.105 0.895 36 H 0.093 0.907 37 H 0.059 0.941 38 H 0.065 0.935 39 H 0.058 0.942 40 H 0.066 0.934 41 H 0.378 0.622 42 H 0.267 0.733 43 H 0.073 0.927 44 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.520 13.649 2.473 14.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.025 3.975 3 C -0.191 4.191 4 C -0.195 4.195 5 C -0.046 4.046 6 N -0.144 5.144 7 N -0.197 5.197 8 H 0.283 0.717 9 C -0.017 4.017 10 C -0.015 4.015 11 N -0.216 5.216 12 C -0.105 4.105 13 C -0.164 4.164 14 C 0.220 3.780 15 O -0.389 6.389 16 C -0.576 4.576 17 H 0.074 0.926 18 C -0.129 4.129 19 N -0.532 5.532 20 Si 0.724 3.276 21 H -0.202 1.202 22 H -0.210 1.210 23 H -0.201 1.201 24 C -0.085 4.085 25 N -0.256 5.256 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.123 0.877 36 H 0.112 0.888 37 H 0.078 0.922 38 H 0.084 0.916 39 H 0.077 0.923 40 H 0.085 0.915 41 H 0.227 0.773 42 H 0.077 0.923 43 H 0.091 0.909 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -3.648 13.829 2.992 14.612 hybrid contribution -1.340 -0.997 -0.871 1.884 sum -4.988 12.832 2.120 13.930 Atomic orbital electron populations 1.21795 0.93060 1.02756 1.01789 1.18904 0.95577 0.94345 0.88666 1.21803 1.02153 0.93573 1.01596 1.21832 1.02357 1.00334 0.95012 1.24061 0.87285 0.97082 0.96216 1.77897 1.16213 1.18277 1.02033 1.48095 1.04702 1.45225 1.21679 0.71696 1.25638 0.89784 0.93702 0.92543 1.21364 0.87869 0.94240 0.98076 1.65166 1.29871 1.04754 1.21767 1.23137 0.99691 1.00006 0.87695 1.22883 1.00997 0.93810 0.98754 1.19263 0.87048 0.85442 0.86274 1.86123 1.62680 1.49986 1.40111 1.21488 0.93411 1.25509 1.17194 0.92630 1.24959 0.95971 0.96010 0.95979 1.69718 1.18971 1.36128 1.28340 0.86579 0.82361 0.79659 0.78990 1.20218 1.21003 1.20071 1.23384 0.91419 0.92990 1.00693 1.70302 1.20553 1.21396 1.13394 0.92318 0.91986 0.91986 0.91467 0.91846 0.92927 0.92267 0.91891 0.91347 0.87679 0.88847 0.92235 0.91628 0.92273 0.91536 0.77250 0.92272 0.90883 0.93351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 7.93 37.15 0.29 -1.33 16 2 C 0.03 0.37 0.99 -155.66 -0.15 0.22 16 3 C -0.13 -1.49 8.46 37.16 0.31 -1.18 16 4 C -0.14 -1.86 8.46 37.16 0.31 -1.55 16 5 C 0.24 3.89 6.36 -156.85 -1.00 2.89 16 6 N -0.32 -5.30 12.06 32.42 0.39 -4.91 16 7 N -0.48 -7.25 6.53 32.62 0.21 -7.04 16 8 H 0.44 5.35 8.96 -182.34 -1.63 3.72 16 9 C 0.26 4.19 5.40 -155.69 -0.84 3.35 16 10 C 0.12 1.68 6.11 -4.98 -0.03 1.65 16 11 N -0.49 -9.15 5.54 -231.90 -1.28 -10.43 16 12 C 0.02 0.44 6.46 -2.76 -0.02 0.42 16 13 C -0.13 -2.96 5.26 -25.37 -0.13 -3.09 16 14 C 0.26 6.47 0.95 -89.91 -0.09 6.39 16 15 O -0.58 -15.20 13.09 -35.23 -0.46 -15.66 16 16 C -0.54 -14.60 8.15 -34.44 -0.28 -14.88 16 17 H 0.06 1.53 7.78 -52.48 -0.41 1.12 16 18 C 0.07 1.97 5.28 -17.82 -0.09 1.88 16 19 N -0.89 -24.00 11.00 55.43 0.61 -23.39 16 20 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 C 0.04 0.90 5.46 -1.90 -0.01 0.89 16 25 N -0.53 -9.02 9.86 -8.16 -0.08 -9.10 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.11 1.36 8.08 -51.93 -0.42 0.94 16 36 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.06 1.16 6.03 -51.93 -0.31 0.85 16 38 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 39 H 0.06 1.50 7.84 -51.93 -0.41 1.09 16 40 H 0.07 1.64 7.98 -51.93 -0.41 1.22 16 41 H 0.38 10.01 7.46 45.56 0.34 10.35 16 42 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 43 H 0.07 1.53 8.14 -51.93 -0.42 1.10 16 44 H 0.05 1.04 5.45 -51.93 -0.28 0.75 16 LS Contribution 349.78 15.07 5.27 5.27 Total: -1.00 -30.04 349.78 -9.83 -39.87 By element: Atomic # 1 Polarization: 21.47 SS G_CDS: -7.75 Total: 13.72 kcal Atomic # 6 Polarization: -2.63 SS G_CDS: -1.72 Total: -4.35 kcal Atomic # 7 Polarization: -54.72 SS G_CDS: -0.15 Total: -54.87 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: -0.46 Total: -15.66 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.04 -9.83 -39.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592150162.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.609 kcal (2) G-P(sol) polarization free energy of solvation -30.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds