Wall clock time and date at job start Tue Mar 31 2020 03:31:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47353 * 2 1 4 4 C 1.53005 * 109.47212 * 240.00220 * 2 1 3 5 5 C 1.50697 * 109.47289 * 120.00160 * 2 1 3 6 6 N 1.30714 * 125.52919 * 0.02562 * 5 2 1 7 7 N 1.40437 * 106.79630 * 179.73521 * 6 5 2 8 8 H 0.97001 * 126.82577 * 179.97438 * 7 6 5 9 9 C 1.34437 * 106.35285 * 0.02562 * 7 6 5 10 10 C 1.50703 * 125.95709 * 180.02562 * 9 7 6 11 11 N 1.46897 * 109.47201 * 94.97185 * 10 9 7 12 12 C 1.47899 * 111.00255 * 69.87126 * 11 10 9 13 13 C 1.53993 * 107.06173 * 214.15400 * 12 11 10 14 14 C 1.54598 * 105.13356 * 1.22659 * 13 12 11 15 15 O 1.42904 * 110.72116 * 263.59737 * 14 13 12 16 16 C 1.50696 * 110.72295 * 140.49675 * 14 13 12 17 17 H 1.08003 * 119.99704 * 241.45084 * 16 14 13 18 18 C 1.37881 * 120.00484 * 61.44885 * 16 14 13 19 19 N 1.31511 * 119.99342 * 0.02562 * 18 16 14 20 20 Si 1.86796 * 120.00177 * 179.97438 * 18 16 14 21 21 H 1.48508 * 109.46978 * 60.00106 * 20 18 16 22 22 H 1.48496 * 109.47018 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47476 * 300.00211 * 20 18 16 24 24 C 1.48530 * 111.00032 * 312.47248 * 11 10 9 25 25 N 1.30832 * 108.07767 * 359.97438 * 9 7 6 26 26 H 1.08997 * 109.47011 * 299.99682 * 1 2 3 27 27 H 1.08998 * 109.47502 * 59.99904 * 1 2 3 28 28 H 1.09004 * 109.46846 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47768 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.47108 * 300.00070 * 3 2 1 31 31 H 1.08997 * 109.46804 * 59.99632 * 3 2 1 32 32 H 1.09004 * 109.46861 * 299.99557 * 4 2 1 33 33 H 1.08998 * 109.46989 * 59.99561 * 4 2 1 34 34 H 1.09002 * 109.46986 * 179.97438 * 4 2 1 35 35 H 1.09005 * 109.46727 * 214.96938 * 10 9 7 36 36 H 1.08997 * 109.47546 * 334.96213 * 10 9 7 37 37 H 1.09001 * 109.91913 * 333.50878 * 12 11 10 38 38 H 1.08999 * 109.92136 * 94.79901 * 12 11 10 39 39 H 1.09001 * 110.30877 * 120.13446 * 13 12 11 40 40 H 1.08997 * 110.31109 * 242.21169 * 13 12 11 41 41 H 0.96702 * 114.00242 * 298.54903 * 15 14 13 42 42 H 0.97009 * 119.99698 * 180.02562 * 19 18 16 43 43 H 1.09004 * 110.66583 * 278.15528 * 24 11 10 44 44 H 1.08998 * 110.66627 * 41.28559 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0323 -0.7104 1.2304 6 7 1.2826 -1.2462 2.1575 7 7 2.1512 -1.8032 3.1101 8 1 1.9006 -2.2731 3.9210 9 6 3.3989 -1.5550 2.6757 10 6 4.6743 -1.9623 3.3675 11 7 5.1483 -3.2362 2.8103 12 6 5.6354 -3.0603 1.4250 13 6 5.2921 -4.3508 0.6581 14 6 4.5578 -5.2460 1.6826 15 8 5.4633 -6.1735 2.2841 16 6 3.4095 -5.9716 1.0302 17 1 2.3994 -5.8027 1.3730 18 6 3.6483 -6.8512 -0.0045 19 7 4.8784 -7.0572 -0.4215 20 14 2.2249 -7.7512 -0.8126 21 1 1.2799 -6.7632 -1.3926 22 1 2.7436 -8.6311 -1.8905 23 1 1.5193 -8.5743 0.2023 24 6 4.0433 -4.2254 2.7285 25 7 3.3128 -0.8990 1.5470 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 3.1299 1.4426 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9563 0.8899 32 1 1.6767 -1.7489 -1.2493 33 1 1.6766 -0.2074 -2.1392 34 1 3.1300 -0.7208 -1.2495 35 1 5.4323 -1.1941 3.2139 36 1 4.4872 -2.0797 4.4349 37 1 5.1368 -2.2091 0.9613 38 1 6.7144 -2.9058 1.4275 39 1 4.6390 -4.1273 -0.1855 40 1 6.2031 -4.8387 0.3116 41 1 5.8735 -6.7854 1.6577 42 1 5.0464 -7.6758 -1.1497 43 1 3.8872 -4.7085 3.6931 44 1 3.1257 -3.7494 2.3826 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592150162.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:38 Heat of formation + Delta-G solvation = 10.316481 kcal Electronic energy + Delta-G solvation = -25344.048673 eV Core-core repulsion = 21910.895430 eV Total energy + Delta-G solvation = -3433.153243 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.33390 -40.10771 -37.91430 -36.68344 -34.21049 -33.26705 -33.00634 -30.93073 -29.84363 -28.28805 -28.17029 -27.52935 -25.81097 -24.22814 -22.57736 -21.66770 -21.21263 -19.91547 -19.11279 -18.70058 -17.19337 -17.06520 -16.77409 -16.20913 -15.98798 -15.74811 -15.41358 -14.94632 -14.84439 -14.60301 -14.21555 -13.93719 -13.51106 -13.28675 -13.23168 -13.13755 -13.02925 -12.91329 -12.61100 -12.60574 -12.43683 -12.36482 -12.26284 -12.21367 -12.02241 -11.92694 -11.71586 -11.14653 -11.02521 -10.93190 -10.65882 -10.53578 -10.14156 -9.53186 -8.26991 -6.42282 0.56655 1.33963 1.34792 1.42476 1.68416 1.85031 2.31930 2.84972 2.97813 3.15392 3.48893 3.73282 3.88848 3.98835 3.99966 4.06502 4.21554 4.24332 4.43626 4.54117 4.61708 4.72056 4.73480 4.77312 4.83015 4.85307 4.90865 4.97140 4.98566 5.05248 5.14826 5.18823 5.30422 5.36605 5.42719 5.44956 5.48773 5.53138 5.66170 5.80865 5.99942 6.11744 6.16204 6.61652 7.09290 7.29084 7.43606 8.78300 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.014365 B = 0.005939 C = 0.004869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.694439 B = 4713.778486 C = 5749.499641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.022 3.978 3 C -0.124 4.124 4 C -0.132 4.132 5 C 0.225 3.775 6 N -0.336 5.336 7 N -0.474 5.474 8 H 0.449 0.551 9 C 0.259 3.741 10 C 0.118 3.882 11 N -0.492 5.492 12 C 0.033 3.967 13 C -0.116 4.116 14 C 0.243 3.757 15 O -0.586 6.586 16 C -0.563 4.563 17 H 0.043 0.957 18 C 0.034 3.966 19 N -0.906 5.906 20 Si 0.951 3.049 21 H -0.278 1.278 22 H -0.275 1.275 23 H -0.273 1.273 24 C 0.055 3.945 25 N -0.547 5.547 26 H 0.058 0.942 27 H 0.089 0.911 28 H 0.041 0.959 29 H 0.056 0.944 30 H 0.090 0.910 31 H 0.053 0.947 32 H 0.030 0.970 33 H 0.093 0.907 34 H 0.052 0.948 35 H 0.126 0.874 36 H 0.129 0.871 37 H 0.062 0.938 38 H 0.082 0.918 39 H 0.029 0.971 40 H 0.048 0.952 41 H 0.372 0.628 42 H 0.270 0.730 43 H 0.077 0.923 44 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.929 15.064 2.748 15.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.019 3.981 3 C -0.183 4.183 4 C -0.190 4.190 5 C -0.058 4.058 6 N -0.165 5.165 7 N -0.193 5.193 8 H 0.296 0.704 9 C -0.022 4.022 10 C -0.013 4.013 11 N -0.214 5.214 12 C -0.095 4.095 13 C -0.155 4.155 14 C 0.203 3.797 15 O -0.394 6.394 16 C -0.601 4.601 17 H 0.061 0.939 18 C -0.167 4.167 19 N -0.545 5.545 20 Si 0.777 3.223 21 H -0.204 1.204 22 H -0.200 1.200 23 H -0.198 1.198 24 C -0.072 4.072 25 N -0.276 5.276 26 H 0.077 0.923 27 H 0.108 0.892 28 H 0.060 0.940 29 H 0.075 0.925 30 H 0.108 0.892 31 H 0.072 0.928 32 H 0.050 0.950 33 H 0.112 0.888 34 H 0.072 0.928 35 H 0.144 0.856 36 H 0.147 0.853 37 H 0.080 0.920 38 H 0.100 0.900 39 H 0.048 0.952 40 H 0.067 0.933 41 H 0.221 0.779 42 H 0.079 0.921 43 H 0.095 0.905 44 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -4.058 15.247 3.291 16.118 hybrid contribution -1.211 -1.442 -0.955 2.112 sum -5.269 13.805 2.336 14.960 Atomic orbital electron populations 1.21750 0.91965 1.01839 1.03161 1.19145 0.96480 0.95302 0.87196 1.21744 1.01440 0.92094 1.02974 1.21795 1.01326 0.99203 0.96692 1.24704 0.87149 0.96942 0.96971 1.77849 1.17059 1.18941 1.02658 1.48065 1.04433 1.44948 1.21877 0.70375 1.25841 0.90333 0.93548 0.92438 1.21606 0.87736 0.92574 0.99432 1.65109 1.29083 1.06508 1.20706 1.23004 1.00766 0.97684 0.88003 1.22652 0.99249 0.95560 0.98029 1.19491 0.86485 0.85869 0.87868 1.86114 1.62858 1.50216 1.40177 1.21734 0.93623 1.26633 1.18111 0.93877 1.25607 0.98152 0.96607 0.96353 1.69793 1.20082 1.36210 1.28405 0.85726 0.79736 0.78571 0.78293 1.20403 1.19983 1.19798 1.23144 0.91823 0.92720 0.99552 1.70295 1.21137 1.22166 1.14048 0.92306 0.89208 0.94007 0.92488 0.89155 0.92820 0.95029 0.88815 0.92841 0.85586 0.85346 0.91993 0.89965 0.95172 0.93298 0.77925 0.92075 0.90499 0.93871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.92 7.93 71.98 0.57 -2.35 16 2 C 0.02 0.56 0.99 -52.93 -0.05 0.50 16 3 C -0.12 -2.54 8.46 71.98 0.61 -1.93 16 4 C -0.13 -3.51 8.46 71.98 0.61 -2.90 16 5 C 0.23 7.29 6.36 138.63 0.88 8.17 16 6 N -0.34 -11.14 12.06 -51.33 -0.62 -11.76 16 7 N -0.47 -13.86 6.53 -50.70 -0.33 -14.19 16 8 H 0.45 10.42 8.96 -213.10 -1.91 8.51 16 9 C 0.26 7.85 5.40 138.22 0.75 8.59 16 10 C 0.12 3.07 6.11 85.56 0.52 3.60 16 11 N -0.49 -17.39 5.54 -887.59 -4.91 -22.30 16 12 C 0.03 1.27 6.46 86.45 0.56 1.83 16 13 C -0.12 -5.55 5.26 31.47 0.17 -5.39 16 14 C 0.24 12.22 0.95 -10.34 -0.01 12.22 16 15 O -0.59 -30.96 13.09 -148.98 -1.95 -32.91 16 16 C -0.56 -31.14 8.15 25.60 0.21 -30.93 16 17 H 0.04 2.42 7.78 -2.91 -0.02 2.40 16 18 C 0.03 1.85 5.28 84.66 0.45 2.30 16 19 N -0.91 -49.39 11.00 21.45 0.24 -49.15 16 20 Si 0.95 43.44 29.54 68.60 2.03 45.47 16 21 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 22 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 23 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 24 C 0.06 2.31 5.46 86.65 0.47 2.78 16 25 N -0.55 -18.27 9.86 -179.72 -1.77 -20.04 16 26 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.04 1.09 8.14 -2.39 -0.02 1.08 16 29 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.13 2.84 8.08 -2.38 -0.02 2.82 16 36 H 0.13 2.49 8.14 -2.39 -0.02 2.47 16 37 H 0.06 2.37 6.03 -2.39 -0.01 2.35 16 38 H 0.08 2.91 8.14 -2.39 -0.02 2.89 16 39 H 0.03 1.57 7.84 -2.39 -0.02 1.55 16 40 H 0.05 2.46 7.98 -2.39 -0.02 2.44 16 41 H 0.37 20.12 7.46 -74.06 -0.55 19.57 16 42 H 0.27 14.02 8.31 -92.70 -0.77 13.25 16 43 H 0.08 3.13 8.14 -2.38 -0.02 3.11 16 44 H 0.04 1.84 5.45 -2.39 -0.01 1.83 16 Total: -1.00 -65.25 349.78 -3.05 -68.30 By element: Atomic # 1 Polarization: 41.55 SS G_CDS: -1.45 Total: 40.09 kcal Atomic # 6 Polarization: -9.24 SS G_CDS: 5.73 Total: -3.51 kcal Atomic # 7 Polarization: -110.04 SS G_CDS: -7.40 Total: -117.44 kcal Atomic # 8 Polarization: -30.96 SS G_CDS: -1.95 Total: -32.91 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -65.25 -3.05 -68.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592150162.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.614 kcal (2) G-P(sol) polarization free energy of solvation -65.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds