Wall clock time and date at job start Tue Mar 31 2020 03:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.52997 * 109.46817 * 240.00194 * 2 1 3 5 5 N 1.46497 * 109.47195 * 184.99778 * 4 2 1 6 6 N 1.40443 * 126.82699 * 269.68825 * 5 4 2 7 7 C 1.30713 * 106.79315 * 179.88542 * 6 5 4 8 8 N 1.33240 * 108.94694 * 0.38160 * 7 6 5 9 9 C 1.30834 * 109.82898 * 359.75002 * 8 7 6 10 10 C 1.50699 * 125.95972 * 180.02562 * 9 8 7 11 11 N 1.46906 * 109.46576 * 269.95390 * 10 9 8 12 12 C 1.48531 * 110.99910 * 52.60879 * 11 10 9 13 13 C 1.54940 * 103.22345 * 159.71829 * 12 11 10 14 14 C 1.54593 * 102.92548 * 322.58204 * 13 12 11 15 15 O 1.42899 * 110.31178 * 263.04557 * 14 13 12 16 16 C 1.50700 * 110.30898 * 140.87389 * 14 13 12 17 17 H 1.07996 * 119.99678 * 244.28421 * 16 14 13 18 18 C 1.37876 * 119.99965 * 64.28698 * 16 14 13 19 19 N 1.31509 * 120.00119 * 359.97438 * 18 16 14 20 20 Si 1.86798 * 120.00031 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47122 * 89.99719 * 20 18 16 22 22 H 1.48495 * 109.47245 * 210.00201 * 20 18 16 23 23 H 1.48512 * 109.46908 * 329.99919 * 20 18 16 24 24 C 1.47905 * 110.99447 * 170.00069 * 11 10 9 25 25 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 26 26 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 28 28 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 29 29 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 30 30 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 31 31 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47630 * 305.00128 * 4 2 1 33 33 H 1.09004 * 109.47346 * 65.00258 * 4 2 1 34 34 H 1.08007 * 125.53051 * 180.12744 * 7 6 5 35 35 H 1.09001 * 109.47515 * 29.95051 * 10 9 8 36 36 H 1.08995 * 109.46924 * 149.95972 * 10 9 8 37 37 H 1.08994 * 110.66555 * 278.14746 * 12 11 10 38 38 H 1.08992 * 110.67108 * 41.28281 * 12 11 10 39 39 H 1.09002 * 110.72294 * 204.22603 * 13 12 11 40 40 H 1.09001 * 110.87772 * 81.01423 * 13 12 11 41 41 H 0.96696 * 113.99416 * 295.71664 * 15 14 13 42 42 H 0.96996 * 120.00220 * 179.97438 * 19 18 16 43 43 H 1.08996 * 109.92345 * 333.51116 * 24 11 10 44 44 H 1.09007 * 109.91409 * 94.80494 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 3.5000 -0.8263 -1.1907 6 7 4.4313 0.0965 -1.6941 7 6 5.6184 -0.3821 -1.4289 8 7 5.4838 -1.5487 -0.7995 9 6 4.2145 -1.8283 -0.6496 10 6 3.6517 -3.0585 0.0144 11 7 3.4689 -4.1160 -0.9888 12 6 4.7211 -4.3464 -1.7536 13 6 4.5217 -5.7663 -2.3407 14 6 3.7932 -6.5130 -1.1998 15 8 4.7284 -7.2605 -0.4197 16 6 2.7342 -7.4247 -1.7640 17 1 1.6927 -7.2450 -1.5418 18 6 3.0950 -8.4883 -2.5638 19 7 4.3632 -8.7068 -2.8348 20 14 1.7824 -9.6188 -3.2626 21 1 1.3334 -9.1012 -4.5801 22 1 2.3433 -10.9833 -3.4319 23 1 0.6268 -9.6707 -2.3312 24 6 3.1465 -5.4077 -0.3444 25 1 -0.3633 0.5140 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.6768 1.9563 -0.8899 30 1 1.6768 1.9562 0.8901 31 1 3.1301 1.4425 0.0005 32 1 1.6053 -1.7198 -1.2953 33 1 1.7516 -0.1582 -2.1370 34 1 6.5563 0.0895 -1.6827 35 1 4.3416 -3.4036 0.7845 36 1 2.6904 -2.8186 0.4687 37 1 4.8252 -3.6113 -2.5517 38 1 5.5864 -4.3219 -1.0914 39 1 5.4829 -6.2335 -2.5552 40 1 3.9023 -5.7327 -3.2369 41 1 5.1674 -7.9712 -0.9067 42 1 4.6170 -9.4552 -3.3972 43 1 3.5566 -5.4317 0.6651 44 1 2.0659 -5.5472 -0.3125 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592151621.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:13 Heat of formation + Delta-G solvation = 37.027735 kcal Electronic energy + Delta-G solvation = -24654.912413 eV Core-core repulsion = 21222.917457 eV Total energy + Delta-G solvation = -3431.994956 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.03688 -38.38939 -36.88183 -35.03043 -32.61426 -32.07431 -31.83817 -29.59684 -28.05064 -27.41355 -26.87506 -25.74057 -23.98314 -21.97287 -21.16313 -20.60415 -19.65768 -19.35958 -17.11819 -16.92290 -15.97852 -15.58457 -15.15505 -14.97527 -14.75662 -14.34618 -14.02782 -13.75075 -13.61850 -13.45992 -13.29505 -12.59889 -12.39438 -12.32578 -12.05074 -11.93337 -11.65149 -11.48185 -11.31200 -11.24938 -11.11594 -11.02598 -10.90571 -10.60868 -10.47996 -10.32656 -9.95908 -9.84375 -9.57756 -9.44633 -9.16789 -8.59518 -8.10242 -7.94368 -6.20020 -4.26589 1.70126 2.37951 3.06536 3.23535 3.30848 3.33989 4.15559 4.32154 4.39093 4.48101 4.62567 4.67923 4.85134 4.92440 5.08839 5.18920 5.27163 5.39089 5.42078 5.55436 5.59803 5.61608 5.67350 5.78228 5.80700 5.97773 6.04403 6.04962 6.12630 6.30223 6.35622 6.41551 6.48486 6.58204 6.87185 6.91276 7.04378 7.22646 7.46753 7.56945 7.61177 7.83183 8.14185 8.25570 8.74721 9.40719 9.53094 10.87660 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.020733 B = 0.004042 C = 0.003651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.173984 B = 6926.214581 C = 7666.539917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.112 4.112 3 C -0.145 4.145 4 C 0.129 3.871 5 N -0.363 5.363 6 N -0.325 5.325 7 C 0.193 3.807 8 N -0.541 5.541 9 C 0.297 3.703 10 C 0.118 3.882 11 N -0.510 5.510 12 C 0.039 3.961 13 C -0.118 4.118 14 C 0.245 3.755 15 O -0.594 6.594 16 C -0.529 4.529 17 H 0.062 0.938 18 C 0.068 3.932 19 N -0.899 5.899 20 Si 0.900 3.100 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.273 1.273 24 C 0.055 3.945 25 H 0.059 0.941 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.075 0.925 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.107 0.893 33 H 0.095 0.905 34 H 0.213 0.787 35 H 0.071 0.929 36 H 0.091 0.909 37 H 0.058 0.942 38 H 0.046 0.954 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.384 0.616 42 H 0.267 0.733 43 H 0.041 0.959 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.073 15.865 4.391 16.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.131 4.131 3 C -0.202 4.202 4 C 0.007 3.993 5 N -0.153 5.153 6 N -0.153 5.153 7 C -0.110 4.110 8 N -0.269 5.269 9 C 0.020 3.980 10 C -0.013 4.013 11 N -0.236 5.236 12 C -0.088 4.088 13 C -0.157 4.157 14 C 0.205 3.795 15 O -0.404 6.404 16 C -0.568 4.568 17 H 0.081 0.919 18 C -0.133 4.133 19 N -0.539 5.539 20 Si 0.728 3.272 21 H -0.206 1.206 22 H -0.211 1.211 23 H -0.198 1.198 24 C -0.072 4.072 25 H 0.078 0.922 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.093 0.907 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.126 0.874 33 H 0.114 0.886 34 H 0.229 0.771 35 H 0.089 0.911 36 H 0.109 0.891 37 H 0.076 0.924 38 H 0.065 0.935 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.236 0.764 42 H 0.077 0.923 43 H 0.060 0.940 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -4.514 16.824 4.152 17.907 hybrid contribution 0.126 -1.247 -0.448 1.331 sum -4.388 15.577 3.704 16.602 Atomic orbital electron populations 1.21772 0.93505 1.02605 1.02383 1.21527 0.96694 0.97292 0.97627 1.21812 1.01761 0.94996 1.01622 1.21996 0.73940 1.03553 0.99791 1.50264 1.07407 1.15253 1.42344 1.77966 0.99050 1.15400 1.22913 1.25875 0.96920 0.91523 0.96676 1.70528 1.16657 1.16470 1.23245 1.24175 0.87251 0.91925 0.94652 1.20830 1.00056 0.86743 0.93664 1.65056 1.32161 1.05447 1.20941 1.23254 0.90085 0.98839 0.96649 1.22992 1.00908 0.91834 0.99966 1.19315 0.86709 0.87802 0.85687 1.86077 1.59860 1.50903 1.43570 1.21682 0.93478 1.11619 1.30000 0.91943 1.25010 0.95677 0.97341 0.95294 1.69617 1.15463 1.30423 1.38374 0.86464 0.81644 0.79784 0.79323 1.20586 1.21147 1.19787 1.22913 1.00838 0.87134 0.96325 0.92222 0.91838 0.91993 0.90668 0.92452 0.92756 0.92253 0.87446 0.88649 0.77101 0.91110 0.89091 0.92402 0.93534 0.91623 0.91628 0.76394 0.92307 0.94024 0.89924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 9.19 37.16 0.34 -0.69 16 2 C -0.11 -1.00 3.13 -90.62 -0.28 -1.29 16 3 C -0.14 -1.35 9.06 37.16 0.34 -1.01 16 4 C 0.13 1.40 5.52 -4.04 -0.02 1.38 16 5 N -0.36 -5.06 3.22 -58.34 -0.19 -5.25 16 6 N -0.33 -4.75 11.84 29.29 0.35 -4.40 16 7 C 0.19 2.74 13.03 -91.81 -1.20 1.55 16 8 N -0.54 -8.89 10.86 -11.97 -0.13 -9.02 16 9 C 0.30 4.61 6.32 -155.69 -0.98 3.63 16 10 C 0.12 1.80 5.15 -4.97 -0.03 1.77 16 11 N -0.51 -9.44 5.39 -231.89 -1.25 -10.69 16 12 C 0.04 0.80 5.33 -1.90 -0.01 0.79 16 13 C -0.12 -2.77 5.49 -24.87 -0.14 -2.91 16 14 C 0.25 5.98 0.99 -90.41 -0.09 5.89 16 15 O -0.59 -15.35 12.93 -35.23 -0.46 -15.81 16 16 C -0.53 -13.95 8.10 -34.44 -0.28 -14.23 16 17 H 0.06 1.62 7.34 -52.49 -0.39 1.24 16 18 C 0.07 1.80 5.26 -17.82 -0.09 1.70 16 19 N -0.90 -23.92 10.88 55.43 0.60 -23.32 16 20 Si 0.90 20.51 29.54 -169.99 -5.02 15.49 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 22 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 24 C 0.05 1.14 6.17 -2.75 -0.02 1.12 16 25 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.68 6.99 -51.93 -0.36 0.32 16 32 H 0.11 1.16 7.72 -51.93 -0.40 0.76 16 33 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.21 2.18 8.06 -52.48 -0.42 1.76 16 35 H 0.07 1.12 7.81 -51.93 -0.41 0.71 16 36 H 0.09 1.14 7.76 -51.93 -0.40 0.74 16 37 H 0.06 1.18 7.90 -51.93 -0.41 0.77 16 38 H 0.05 0.98 8.02 -51.93 -0.42 0.56 16 39 H 0.07 1.62 8.05 -51.93 -0.42 1.20 16 40 H 0.06 1.63 7.86 -51.93 -0.41 1.22 16 41 H 0.38 10.17 7.05 45.56 0.32 10.49 16 42 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 43 H 0.04 0.84 7.39 -51.93 -0.38 0.46 16 44 H 0.08 1.67 7.39 -51.93 -0.38 1.28 16 LS Contribution 353.37 15.07 5.33 5.33 Total: -1.00 -29.08 353.37 -9.80 -38.88 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: -6.57 Total: 11.09 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: -2.46 Total: -2.29 kcal Atomic # 7 Polarization: -52.07 SS G_CDS: -0.62 Total: -52.69 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: -0.46 Total: -15.81 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -29.08 -9.80 -38.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592151621.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.910 kcal (2) G-P(sol) polarization free energy of solvation -29.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds