Wall clock time and date at job start Tue Mar 31 2020 03:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.52997 * 109.46817 * 240.00194 * 2 1 3 5 5 N 1.46497 * 109.47195 * 184.99778 * 4 2 1 6 6 N 1.40443 * 126.82699 * 269.68825 * 5 4 2 7 7 C 1.30713 * 106.79315 * 179.88542 * 6 5 4 8 8 N 1.33240 * 108.94694 * 0.38160 * 7 6 5 9 9 C 1.30834 * 109.82898 * 359.75002 * 8 7 6 10 10 C 1.50699 * 125.95972 * 180.02562 * 9 8 7 11 11 N 1.46906 * 109.46576 * 269.95390 * 10 9 8 12 12 C 1.48531 * 110.99910 * 52.60879 * 11 10 9 13 13 C 1.54940 * 103.22345 * 159.71829 * 12 11 10 14 14 C 1.54593 * 102.92548 * 322.58204 * 13 12 11 15 15 O 1.42899 * 110.31178 * 263.04557 * 14 13 12 16 16 C 1.50700 * 110.30898 * 140.87389 * 14 13 12 17 17 H 1.07996 * 119.99678 * 244.28421 * 16 14 13 18 18 C 1.37876 * 119.99965 * 64.28698 * 16 14 13 19 19 N 1.31509 * 120.00119 * 359.97438 * 18 16 14 20 20 Si 1.86798 * 120.00031 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47122 * 89.99719 * 20 18 16 22 22 H 1.48495 * 109.47245 * 210.00201 * 20 18 16 23 23 H 1.48512 * 109.46908 * 329.99919 * 20 18 16 24 24 C 1.47905 * 110.99447 * 170.00069 * 11 10 9 25 25 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 26 26 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 28 28 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 29 29 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 30 30 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 31 31 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47630 * 305.00128 * 4 2 1 33 33 H 1.09004 * 109.47346 * 65.00258 * 4 2 1 34 34 H 1.08007 * 125.53051 * 180.12744 * 7 6 5 35 35 H 1.09001 * 109.47515 * 29.95051 * 10 9 8 36 36 H 1.08995 * 109.46924 * 149.95972 * 10 9 8 37 37 H 1.08994 * 110.66555 * 278.14746 * 12 11 10 38 38 H 1.08992 * 110.67108 * 41.28281 * 12 11 10 39 39 H 1.09002 * 110.72294 * 204.22603 * 13 12 11 40 40 H 1.09001 * 110.87772 * 81.01423 * 13 12 11 41 41 H 0.96696 * 113.99416 * 295.71664 * 15 14 13 42 42 H 0.96996 * 120.00220 * 179.97438 * 19 18 16 43 43 H 1.08996 * 109.92345 * 333.51116 * 24 11 10 44 44 H 1.09007 * 109.91409 * 94.80494 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 3.5000 -0.8263 -1.1907 6 7 4.4313 0.0965 -1.6941 7 6 5.6184 -0.3821 -1.4289 8 7 5.4838 -1.5487 -0.7995 9 6 4.2145 -1.8283 -0.6496 10 6 3.6517 -3.0585 0.0144 11 7 3.4689 -4.1160 -0.9888 12 6 4.7211 -4.3464 -1.7536 13 6 4.5217 -5.7663 -2.3407 14 6 3.7932 -6.5130 -1.1998 15 8 4.7284 -7.2605 -0.4197 16 6 2.7342 -7.4247 -1.7640 17 1 1.6927 -7.2450 -1.5418 18 6 3.0950 -8.4883 -2.5638 19 7 4.3632 -8.7068 -2.8348 20 14 1.7824 -9.6188 -3.2626 21 1 1.3334 -9.1012 -4.5801 22 1 2.3433 -10.9833 -3.4319 23 1 0.6268 -9.6707 -2.3312 24 6 3.1465 -5.4077 -0.3444 25 1 -0.3633 0.5140 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.6768 1.9563 -0.8899 30 1 1.6768 1.9562 0.8901 31 1 3.1301 1.4425 0.0005 32 1 1.6053 -1.7198 -1.2953 33 1 1.7516 -0.1582 -2.1370 34 1 6.5563 0.0895 -1.6827 35 1 4.3416 -3.4036 0.7845 36 1 2.6904 -2.8186 0.4687 37 1 4.8252 -3.6113 -2.5517 38 1 5.5864 -4.3219 -1.0914 39 1 5.4829 -6.2335 -2.5552 40 1 3.9023 -5.7327 -3.2369 41 1 5.1674 -7.9712 -0.9067 42 1 4.6170 -9.4552 -3.3972 43 1 3.5566 -5.4317 0.6651 44 1 2.0659 -5.5472 -0.3125 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592151621.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:12 Heat of formation + Delta-G solvation = 18.190712 kcal Electronic energy + Delta-G solvation = -24655.729247 eV Core-core repulsion = 21222.917457 eV Total energy + Delta-G solvation = -3432.811791 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.15316 -40.09258 -37.68440 -36.79751 -34.10065 -33.64262 -33.18572 -31.11054 -29.83211 -28.11336 -27.96668 -27.12416 -25.71694 -23.06655 -22.49351 -21.71750 -21.28486 -20.68559 -19.09940 -18.02261 -17.20502 -16.89246 -16.62699 -16.43104 -16.32911 -15.71224 -15.26551 -15.08215 -14.92243 -14.67681 -14.17282 -14.12633 -13.86685 -13.51698 -13.25491 -13.13144 -13.04623 -12.89716 -12.69377 -12.64352 -12.37759 -12.35715 -12.27439 -12.10350 -11.96231 -11.90539 -11.72351 -11.10544 -10.99087 -10.70136 -10.59873 -10.49544 -10.07372 -9.48497 -8.18902 -6.32642 0.56779 1.36675 1.43309 1.45509 1.54754 1.92158 2.41628 2.92413 3.09597 3.19591 3.51438 3.72854 3.76721 3.90654 3.93938 4.08911 4.22410 4.32072 4.33431 4.44062 4.46921 4.53223 4.61002 4.66996 4.70601 4.78109 4.80011 4.92402 5.00833 5.10327 5.15667 5.20118 5.27114 5.34880 5.38147 5.42421 5.52464 5.59291 5.74943 5.82177 5.87115 6.01801 6.16492 6.72707 7.13444 7.37517 7.46690 8.87279 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.020733 B = 0.004042 C = 0.003651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.173984 B = 6926.214581 C = 7666.539917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.104 4.104 3 C -0.140 4.140 4 C 0.122 3.878 5 N -0.357 5.357 6 N -0.334 5.334 7 C 0.187 3.813 8 N -0.568 5.568 9 C 0.283 3.717 10 C 0.121 3.879 11 N -0.505 5.505 12 C 0.059 3.941 13 C -0.110 4.110 14 C 0.228 3.772 15 O -0.601 6.601 16 C -0.551 4.551 17 H 0.062 0.938 18 C 0.026 3.974 19 N -0.918 5.918 20 Si 0.960 3.040 21 H -0.278 1.278 22 H -0.284 1.284 23 H -0.268 1.268 24 C 0.064 3.936 25 H 0.065 0.935 26 H 0.066 0.934 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.035 0.965 32 H 0.110 0.890 33 H 0.101 0.899 34 H 0.242 0.758 35 H 0.069 0.931 36 H 0.123 0.877 37 H 0.058 0.942 38 H 0.039 0.961 39 H 0.044 0.956 40 H 0.045 0.955 41 H 0.378 0.622 42 H 0.268 0.732 43 H 0.047 0.953 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.632 16.895 4.785 18.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.124 4.124 3 C -0.198 4.198 4 C 0.001 3.999 5 N -0.147 5.147 6 N -0.163 5.163 7 C -0.115 4.115 8 N -0.297 5.297 9 C 0.006 3.994 10 C -0.009 4.009 11 N -0.231 5.231 12 C -0.069 4.069 13 C -0.149 4.149 14 C 0.188 3.812 15 O -0.410 6.410 16 C -0.589 4.589 17 H 0.080 0.920 18 C -0.174 4.174 19 N -0.558 5.558 20 Si 0.786 3.214 21 H -0.204 1.204 22 H -0.210 1.210 23 H -0.192 1.192 24 C -0.063 4.063 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.054 0.946 32 H 0.128 0.872 33 H 0.120 0.880 34 H 0.258 0.742 35 H 0.087 0.913 36 H 0.141 0.859 37 H 0.076 0.924 38 H 0.058 0.942 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.228 0.772 42 H 0.077 0.923 43 H 0.065 0.935 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -6.094 17.876 4.554 19.428 hybrid contribution 0.627 -1.514 -0.578 1.737 sum -5.468 16.363 3.976 17.705 Atomic orbital electron populations 1.21749 0.91757 1.03119 1.03181 1.21483 0.97948 0.96610 0.96344 1.21768 1.00129 0.95490 1.02382 1.22290 0.72317 1.04165 1.01137 1.50459 1.08343 1.14559 1.41352 1.77937 0.99381 1.15825 1.23137 1.26501 0.97994 0.90969 0.96017 1.70499 1.17471 1.17628 1.24135 1.24101 0.87447 0.92373 0.95447 1.20889 1.01803 0.85557 0.92626 1.64994 1.30942 1.05255 1.21874 1.22957 0.90716 0.96649 0.96537 1.22779 0.99221 0.93741 0.99159 1.19600 0.86401 0.88516 0.86667 1.86074 1.60173 1.50860 1.43921 1.21981 0.93897 1.12466 1.30542 0.92007 1.25717 0.97495 0.98637 0.95569 1.69712 1.16793 1.30741 1.38576 0.85526 0.79398 0.77900 0.78588 1.20358 1.20964 1.19247 1.22761 1.00890 0.86801 0.95864 0.91600 0.91478 0.91058 0.91037 0.92155 0.91563 0.94629 0.87160 0.88049 0.74178 0.91323 0.85906 0.92397 0.94245 0.93701 0.93624 0.77170 0.92273 0.93514 0.89155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.19 71.98 0.66 -0.94 16 2 C -0.10 -1.64 3.13 -10.79 -0.03 -1.67 16 3 C -0.14 -2.36 9.06 71.98 0.65 -1.71 16 4 C 0.12 2.41 5.52 86.38 0.48 2.88 16 5 N -0.36 -9.44 3.22 -338.49 -1.09 -10.53 16 6 N -0.33 -9.35 11.84 -61.24 -0.73 -10.08 16 7 C 0.19 5.10 13.03 180.77 2.36 7.46 16 8 N -0.57 -18.15 10.86 -191.77 -2.08 -20.23 16 9 C 0.28 8.42 6.32 138.22 0.87 9.30 16 10 C 0.12 3.49 5.15 85.56 0.44 3.93 16 11 N -0.50 -18.07 5.39 -887.56 -4.78 -22.85 16 12 C 0.06 2.40 5.33 86.65 0.46 2.86 16 13 C -0.11 -5.24 5.49 31.80 0.17 -5.07 16 14 C 0.23 11.17 0.99 -10.66 -0.01 11.16 16 15 O -0.60 -31.43 12.93 -148.98 -1.93 -33.35 16 16 C -0.55 -28.98 8.10 25.60 0.21 -28.78 16 17 H 0.06 3.18 7.34 -2.91 -0.02 3.16 16 18 C 0.03 1.34 5.26 84.66 0.45 1.78 16 19 N -0.92 -49.40 10.88 21.45 0.23 -49.16 16 20 Si 0.96 41.82 29.54 68.60 2.03 43.84 16 21 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 22 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 23 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 24 C 0.06 2.59 6.17 86.45 0.53 3.12 16 25 H 0.06 0.68 8.14 -2.39 -0.02 0.67 16 26 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.07 0.94 8.14 -2.39 -0.02 0.93 16 31 H 0.03 0.77 6.99 -2.39 -0.02 0.75 16 32 H 0.11 2.13 7.72 -2.39 -0.02 2.11 16 33 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.24 4.58 8.06 -2.91 -0.02 4.55 16 35 H 0.07 2.05 7.81 -2.39 -0.02 2.03 16 36 H 0.12 2.73 7.76 -2.39 -0.02 2.71 16 37 H 0.06 2.35 7.90 -2.39 -0.02 2.33 16 38 H 0.04 1.66 8.02 -2.39 -0.02 1.64 16 39 H 0.04 2.27 8.05 -2.39 -0.02 2.25 16 40 H 0.04 2.31 7.86 -2.39 -0.02 2.29 16 41 H 0.38 20.47 7.05 -74.06 -0.52 19.95 16 42 H 0.27 13.79 8.31 -92.71 -0.77 13.02 16 43 H 0.05 1.83 7.39 -2.39 -0.02 1.81 16 44 H 0.09 3.50 7.39 -2.38 -0.02 3.48 16 Total: -1.00 -61.70 353.37 -0.64 -62.35 By element: Atomic # 1 Polarization: 35.23 SS G_CDS: 0.46 Total: 35.69 kcal Atomic # 6 Polarization: -2.91 SS G_CDS: 7.24 Total: 4.32 kcal Atomic # 7 Polarization: -104.41 SS G_CDS: -8.45 Total: -112.86 kcal Atomic # 8 Polarization: -31.43 SS G_CDS: -1.93 Total: -33.35 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.84 kcal Total: -61.70 -0.64 -62.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592151621.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.536 kcal (2) G-P(sol) polarization free energy of solvation -61.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds