Wall clock time and date at job start Tue Mar 31 2020 03:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47257 * 2 1 4 4 C 1.53005 * 109.47098 * 240.00337 * 2 1 3 5 5 N 1.46497 * 109.47063 * 119.99927 * 2 1 3 6 6 N 1.40446 * 126.82533 * 245.94365 * 5 2 1 7 7 C 1.30714 * 106.79134 * 180.26556 * 6 5 2 8 8 N 1.33240 * 108.94769 * 359.74632 * 7 6 5 9 9 C 1.30834 * 109.82794 * 0.02562 * 8 7 6 10 10 C 1.50697 * 125.96000 * 179.97438 * 9 8 7 11 11 N 1.46902 * 109.47066 * 274.67160 * 10 9 8 12 12 C 1.47450 * 111.00052 * 74.67175 * 11 10 9 13 13 C 1.54319 * 107.23321 * 123.25451 * 12 11 10 14 14 C 1.55146 * 103.01726 * 22.28604 * 13 12 11 15 15 O 1.42897 * 110.98898 * 82.47489 * 14 13 12 16 16 C 1.50701 * 110.98958 * 206.25016 * 14 13 12 17 17 H 1.08003 * 119.99610 * 118.54510 * 16 14 13 18 18 C 1.37876 * 120.00321 * 298.55044 * 16 14 13 19 19 N 1.31518 * 119.99880 * 359.97438 * 18 16 14 20 20 Si 1.86796 * 120.00263 * 179.97438 * 18 16 14 21 21 H 1.48507 * 109.46939 * 59.99744 * 20 18 16 22 22 H 1.48504 * 109.47294 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47139 * 299.99921 * 20 18 16 24 24 C 1.47847 * 110.99808 * 195.51196 * 11 10 9 25 25 H 1.09005 * 109.47066 * 293.51322 * 1 2 3 26 26 H 1.08998 * 109.47188 * 53.51036 * 1 2 3 27 27 H 1.08997 * 109.47260 * 173.51472 * 1 2 3 28 28 H 1.09000 * 109.47523 * 179.97438 * 3 2 1 29 29 H 1.09005 * 109.46904 * 300.00541 * 3 2 1 30 30 H 1.09001 * 109.47266 * 59.99874 * 3 2 1 31 31 H 1.08998 * 109.46643 * 307.22316 * 4 2 1 32 32 H 1.08997 * 109.46987 * 67.22373 * 4 2 1 33 33 H 1.08994 * 109.46804 * 187.22805 * 4 2 1 34 34 H 1.08004 * 125.52080 * 179.78918 * 7 6 5 35 35 H 1.09000 * 109.47324 * 154.67399 * 10 9 8 36 36 H 1.09002 * 109.47290 * 34.66697 * 10 9 8 37 37 H 1.08995 * 109.88895 * 242.66285 * 12 11 10 38 38 H 1.09001 * 109.88652 * 3.85486 * 12 11 10 39 39 H 1.09002 * 110.70624 * 140.66740 * 13 12 11 40 40 H 1.08992 * 110.70953 * 263.72874 * 13 12 11 41 41 H 0.96699 * 114.00654 * 61.45491 * 15 14 13 42 42 H 0.97000 * 119.99732 * 180.02562 * 19 18 16 43 43 H 1.08998 * 110.37815 * 332.46509 * 24 11 10 44 44 H 1.08998 * 110.37196 * 94.81270 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0183 -0.6906 1.1962 6 7 2.7310 -0.1220 2.2645 7 6 2.9732 -1.0866 3.1127 8 7 2.4511 -2.2183 2.6416 9 6 1.8710 -1.9939 1.4905 10 6 1.1660 -3.0190 0.6402 11 7 2.1461 -3.7069 -0.2109 12 6 2.9479 -4.6637 0.5737 13 6 2.7801 -6.0491 -0.0851 14 6 2.3515 -5.6974 -1.5341 15 8 3.4881 -5.3890 -2.3434 16 6 1.5448 -6.8143 -2.1446 17 1 0.5253 -6.6374 -2.4540 18 6 2.1081 -8.0621 -2.3080 19 7 3.3498 -8.2774 -1.9316 20 14 1.1079 -9.4467 -3.0641 21 1 0.6859 -9.0612 -4.4348 22 1 1.9365 -10.6774 -3.1295 23 1 -0.0936 -9.7021 -2.2297 24 6 1.4750 -4.4409 -1.3049 25 1 -0.3633 0.4100 0.9424 26 1 -0.3633 0.6111 -0.8262 27 1 -0.3633 -1.0210 -0.1161 28 1 3.1301 1.4425 0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.5750 -1.7047 -1.3163 32 1 1.7860 -0.1381 -2.1345 33 1 3.1223 -0.8345 -1.1870 34 1 3.5090 -0.9828 4.0447 35 1 0.4248 -2.5234 0.0132 36 1 0.6701 -3.7459 1.2836 37 1 3.9973 -4.3697 0.5567 38 1 2.5861 -4.6957 1.6014 39 1 3.7245 -6.5934 -0.0839 40 1 2.0046 -6.6247 0.4200 41 1 4.1155 -6.1191 -2.4351 42 1 3.7462 -9.1552 -2.0470 43 1 0.4677 -4.7304 -1.0057 44 1 1.4432 -3.8307 -2.2075 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592152998.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:18 Heat of formation + Delta-G solvation = 29.082162 kcal Electronic energy + Delta-G solvation = -25213.603207 eV Core-core repulsion = 21781.263705 eV Total energy + Delta-G solvation = -3432.339502 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.17052 -40.09070 -38.14767 -36.65144 -34.14361 -33.24853 -32.14340 -30.91967 -29.89545 -28.44420 -28.28284 -27.57712 -25.82104 -23.87909 -22.21239 -21.79596 -21.41051 -20.22800 -18.98777 -17.53846 -17.19054 -16.89816 -16.80045 -16.24581 -16.02413 -15.80554 -15.31616 -14.99129 -14.78829 -14.29796 -14.10620 -13.92875 -13.62040 -13.42754 -13.30493 -13.14879 -13.11033 -12.98294 -12.85699 -12.68599 -12.65390 -12.52247 -12.27906 -12.27259 -12.15909 -11.78456 -11.54872 -11.09362 -10.91172 -10.69314 -10.58741 -10.44908 -10.04039 -9.28410 -8.17995 -6.33880 0.62532 1.35371 1.44532 1.45789 1.52787 1.96184 2.41028 3.01063 3.07047 3.32283 3.42062 3.69322 3.77221 3.88076 3.95724 4.00365 4.11417 4.30735 4.35430 4.47620 4.52686 4.64324 4.64917 4.73905 4.76178 4.77791 4.85039 4.85855 4.94182 5.09071 5.13807 5.20735 5.27058 5.33723 5.45949 5.50619 5.57303 5.57654 5.81821 5.87693 5.96177 6.11072 6.22201 6.72475 7.18309 7.37706 7.46941 8.86987 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.026413 B = 0.004159 C = 0.003908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.822091 B = 6730.197370 C = 7163.180841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.167 3.833 3 C -0.134 4.134 4 C -0.157 4.157 5 N -0.355 5.355 6 N -0.339 5.339 7 C 0.185 3.815 8 N -0.570 5.570 9 C 0.290 3.710 10 C 0.120 3.880 11 N -0.518 5.518 12 C 0.062 3.938 13 C -0.134 4.134 14 C 0.237 3.763 15 O -0.588 6.588 16 C -0.559 4.559 17 H 0.061 0.939 18 C 0.031 3.969 19 N -0.913 5.913 20 Si 0.958 3.042 21 H -0.273 1.273 22 H -0.286 1.286 23 H -0.271 1.271 24 C 0.069 3.931 25 H 0.060 0.940 26 H 0.111 0.889 27 H 0.067 0.933 28 H 0.048 0.952 29 H 0.101 0.899 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.102 0.898 33 H 0.039 0.961 34 H 0.242 0.758 35 H 0.118 0.882 36 H 0.071 0.929 37 H 0.046 0.954 38 H 0.059 0.941 39 H 0.052 0.948 40 H 0.046 0.954 41 H 0.371 0.629 42 H 0.267 0.733 43 H 0.064 0.936 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.089 15.474 4.107 17.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.084 3.916 3 C -0.191 4.191 4 C -0.215 4.215 5 N -0.147 5.147 6 N -0.167 5.167 7 C -0.117 4.117 8 N -0.299 5.299 9 C 0.013 3.987 10 C -0.010 4.010 11 N -0.243 5.243 12 C -0.066 4.066 13 C -0.173 4.173 14 C 0.197 3.803 15 O -0.395 6.395 16 C -0.597 4.597 17 H 0.079 0.921 18 C -0.170 4.170 19 N -0.552 5.552 20 Si 0.783 3.217 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.196 1.196 24 C -0.057 4.057 25 H 0.079 0.921 26 H 0.129 0.871 27 H 0.086 0.914 28 H 0.068 0.932 29 H 0.120 0.880 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.120 0.880 33 H 0.058 0.942 34 H 0.258 0.742 35 H 0.136 0.864 36 H 0.089 0.911 37 H 0.065 0.935 38 H 0.077 0.923 39 H 0.070 0.930 40 H 0.065 0.935 41 H 0.219 0.781 42 H 0.076 0.924 43 H 0.082 0.918 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.722 16.817 4.071 18.225 hybrid contribution -0.141 -2.365 0.165 2.375 sum -5.862 14.453 4.237 16.162 Atomic orbital electron populations 1.22359 0.90900 1.04009 1.04372 1.21229 0.95740 0.94047 0.80552 1.21874 1.01259 0.92100 1.03892 1.22335 1.01173 1.01941 0.96023 1.50832 1.40220 1.06779 1.16867 1.77869 1.16876 1.23485 0.98500 1.26493 0.99059 0.85327 1.00853 1.70442 1.18582 1.29594 1.11321 1.24136 0.96269 0.85843 0.92461 1.20942 0.92724 0.93386 0.93946 1.63512 1.21744 1.28958 1.10043 1.22623 0.97282 0.91036 0.95644 1.23073 1.00619 0.94961 0.98688 1.19756 0.83564 0.90546 0.86465 1.86122 1.36706 1.43284 1.73391 1.21807 0.99765 0.95789 1.42362 0.92070 1.25684 0.95959 1.00649 0.94715 1.69838 1.13991 1.23988 1.47369 0.85622 0.78710 0.78253 0.79075 1.19816 1.21133 1.19598 1.22899 0.95801 0.93709 0.93322 0.92127 0.87085 0.91437 0.93243 0.87989 0.91920 0.90797 0.87974 0.94153 0.74203 0.86424 0.91142 0.93519 0.92307 0.92961 0.93475 0.78110 0.92392 0.91832 0.90355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.50 8.50 71.98 0.61 -1.89 16 2 C 0.17 3.52 1.06 3.61 0.00 3.53 16 3 C -0.13 -2.42 8.04 71.98 0.58 -1.84 16 4 C -0.16 -3.56 8.22 71.98 0.59 -2.97 16 5 N -0.36 -9.94 3.47 -298.51 -1.03 -10.98 16 6 N -0.34 -9.96 11.82 -61.24 -0.72 -10.68 16 7 C 0.18 5.24 13.03 180.76 2.36 7.60 16 8 N -0.57 -18.76 10.95 -191.78 -2.10 -20.86 16 9 C 0.29 8.97 6.66 138.23 0.92 9.89 16 10 C 0.12 3.54 3.91 85.56 0.33 3.87 16 11 N -0.52 -18.57 4.19 -890.08 -3.73 -22.30 16 12 C 0.06 2.50 6.50 86.65 0.56 3.06 16 13 C -0.13 -6.21 5.37 31.78 0.17 -6.04 16 14 C 0.24 11.34 0.87 -10.15 -0.01 11.33 16 15 O -0.59 -30.39 13.16 -148.98 -1.96 -32.35 16 16 C -0.56 -28.84 8.27 25.60 0.21 -28.62 16 17 H 0.06 3.07 7.79 -2.91 -0.02 3.04 16 18 C 0.03 1.58 5.29 84.65 0.45 2.03 16 19 N -0.91 -48.60 10.75 21.45 0.23 -48.37 16 20 Si 0.96 41.18 29.54 68.60 2.03 43.21 16 21 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 22 H -0.29 -12.18 7.11 99.48 0.71 -11.47 16 23 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 24 C 0.07 2.71 5.47 86.77 0.47 3.18 16 25 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 26 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.07 1.09 5.65 -2.39 -0.01 1.07 16 28 H 0.05 1.06 8.14 -2.39 -0.02 1.05 16 29 H 0.10 1.21 8.14 -2.38 -0.02 1.20 16 30 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.07 1.88 4.29 -2.39 -0.01 1.87 16 32 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.24 4.77 8.06 -2.91 -0.02 4.74 16 35 H 0.12 2.81 4.23 -2.39 -0.01 2.80 16 36 H 0.07 2.09 7.81 -2.39 -0.02 2.07 16 37 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.06 2.27 7.12 -2.39 -0.02 2.26 16 39 H 0.05 2.65 7.54 -2.39 -0.02 2.63 16 40 H 0.05 2.22 8.04 -2.39 -0.02 2.20 16 41 H 0.37 19.79 7.56 -74.06 -0.56 19.23 16 42 H 0.27 13.67 8.31 -92.71 -0.77 12.90 16 43 H 0.06 2.30 7.70 -2.39 -0.02 2.28 16 44 H 0.08 2.98 7.90 -2.39 -0.02 2.96 16 Total: -1.00 -62.22 343.47 0.41 -61.80 By element: Atomic # 1 Polarization: 36.96 SS G_CDS: 0.45 Total: 37.40 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: 7.26 Total: 3.12 kcal Atomic # 7 Polarization: -105.83 SS G_CDS: -7.35 Total: -113.18 kcal Atomic # 8 Polarization: -30.39 SS G_CDS: -1.96 Total: -32.35 kcal Atomic # 14 Polarization: 41.18 SS G_CDS: 2.03 Total: 43.21 kcal Total: -62.22 0.41 -61.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592152998.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.885 kcal (2) G-P(sol) polarization free energy of solvation -62.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds