Wall clock time and date at job start Tue Mar 31 2020 03:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46897 * 111.00306 * 2 1 4 4 C 1.38505 * 110.99898 * 123.95552 * 2 1 3 5 5 N 1.31191 * 125.78731 * 0.02620 * 4 2 1 6 6 C 1.34398 * 109.30037 * 179.97438 * 5 4 2 7 7 C 1.34374 * 108.31975 * 0.02562 * 6 5 4 8 8 C 1.50702 * 126.52873 * 179.97438 * 7 6 5 9 9 N 1.46895 * 109.47091 * 264.62660 * 8 7 6 10 10 C 1.48534 * 110.99999 * 58.34444 * 9 8 7 11 11 C 1.54934 * 103.22728 * 159.72355 * 10 9 8 12 12 C 1.54597 * 102.92205 * 322.58340 * 11 10 9 13 13 O 1.42896 * 110.31058 * 263.04814 * 12 11 10 14 14 C 1.50693 * 110.31094 * 140.87313 * 12 11 10 15 15 H 1.08000 * 120.00123 * 244.28397 * 14 12 11 16 16 C 1.37875 * 120.00009 * 64.28928 * 14 12 11 17 17 N 1.31515 * 119.99941 * 359.97438 * 16 14 12 18 18 Si 1.86802 * 120.00083 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47161 * 89.99811 * 18 16 14 20 20 H 1.48503 * 109.46901 * 209.99533 * 18 16 14 21 21 H 1.48493 * 109.47185 * 329.99566 * 18 16 14 22 22 C 1.47895 * 110.99800 * 175.74172 * 9 8 7 23 23 N 1.36027 * 125.78772 * 179.97438 * 4 2 1 24 24 C 1.46496 * 126.49512 * 0.05983 * 23 4 2 25 25 H 1.09000 * 109.46997 * 296.04645 * 1 2 3 26 26 H 1.09003 * 109.47273 * 56.04384 * 1 2 3 27 27 H 1.09003 * 109.47184 * 176.04517 * 1 2 3 28 28 H 1.08998 * 109.47537 * 183.95392 * 3 2 1 29 29 H 1.09005 * 109.47172 * 303.95443 * 3 2 1 30 30 H 1.09000 * 109.47296 * 63.95306 * 3 2 1 31 31 H 1.08001 * 125.83787 * 179.97438 * 6 5 4 32 32 H 1.09008 * 109.46734 * 24.62703 * 8 7 6 33 33 H 1.08998 * 109.46965 * 144.62009 * 8 7 6 34 34 H 1.09003 * 110.66510 * 278.15056 * 10 9 8 35 35 H 1.08993 * 110.66805 * 41.28262 * 10 9 8 36 36 H 1.09001 * 110.72730 * 204.22910 * 11 10 9 37 37 H 1.09000 * 110.88405 * 81.01097 * 11 10 9 38 38 H 0.96707 * 113.99690 * 295.71368 * 13 12 11 39 39 H 0.97000 * 120.00018 * 180.02562 * 17 16 14 40 40 H 1.09002 * 109.91827 * 333.50419 * 22 9 8 41 41 H 1.08993 * 109.92148 * 94.80266 * 22 9 8 42 42 H 1.09004 * 109.47341 * 85.07362 * 24 23 4 43 43 H 1.08998 * 109.47426 * 205.07377 * 24 23 4 44 44 H 1.09002 * 109.47324 * 325.07581 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9653 -0.7222 1.0726 5 7 1.2467 -1.3357 1.9827 6 6 2.0646 -1.9317 2.8671 7 6 3.3339 -1.6846 2.5016 8 6 4.5787 -2.1586 3.2064 9 7 5.0555 -1.1092 4.1170 10 6 4.0118 -0.7534 5.1121 11 6 4.8210 -0.0816 6.2498 12 6 6.1202 -0.9186 6.2908 13 8 6.0343 -1.9181 7.3084 14 6 7.3101 -0.0259 6.5318 15 1 8.0735 0.0726 5.7742 16 6 7.4244 0.6649 7.7195 17 7 6.4946 0.5452 8.6419 18 14 8.8991 1.7720 8.0180 19 1 8.5939 3.1434 7.5370 20 1 9.2011 1.8130 9.4714 21 1 10.0744 1.2397 7.2830 22 6 6.2184 -1.5769 4.9020 23 7 3.2805 -0.9166 1.3603 24 6 4.4236 -0.4043 0.6006 25 1 -0.3633 0.4513 0.9233 26 1 -0.3634 0.5740 -0.8524 27 1 -0.3634 -1.0252 -0.0709 28 1 3.0828 1.3432 -0.0709 29 1 1.5899 1.9163 -0.8525 30 1 1.7045 1.8723 0.9233 31 1 1.7547 -2.5096 3.7252 32 1 4.3525 -3.0595 3.7768 33 1 5.3514 -2.3794 2.4700 34 1 3.2952 -0.0524 4.6841 35 1 3.5063 -1.6478 5.4759 36 1 4.2866 -0.1524 7.1971 37 1 5.0399 0.9587 6.0089 38 1 5.9702 -1.5618 8.2052 39 1 6.5748 1.0315 9.4773 40 1 6.1866 -2.6619 5.0023 41 1 7.1435 -1.2736 4.4120 42 1 4.6521 0.6101 0.9277 43 1 5.2892 -1.0445 0.7706 44 1 4.1800 -0.3972 -0.4618 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592522318.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:41:55 Heat of formation + Delta-G solvation = 39.811322 kcal Electronic energy + Delta-G solvation = -24677.600340 eV Core-core repulsion = 21245.726089 eV Total energy + Delta-G solvation = -3431.874251 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.00688 -38.40449 -37.15546 -34.89347 -33.96072 -32.07611 -31.05878 -28.64212 -27.89922 -27.79000 -27.06597 -25.53785 -24.19722 -23.51725 -20.63408 -20.40097 -19.49241 -19.31444 -17.16281 -17.07339 -16.13285 -15.49935 -15.29460 -14.95835 -14.86058 -14.58229 -14.36322 -13.89818 -13.75594 -13.24925 -13.06317 -12.91672 -12.70251 -12.49798 -12.26707 -12.13552 -12.02309 -11.73618 -11.63271 -11.28714 -11.08397 -10.93557 -10.60373 -10.48333 -10.30701 -9.96552 -9.87051 -9.64487 -9.41039 -9.16836 -8.59682 -8.12496 -7.90440 -7.58940 -6.20331 -4.26643 2.06986 2.62990 3.14950 3.22742 3.29983 3.33460 3.78339 4.31216 4.64092 4.69150 4.80279 4.85639 5.07126 5.08550 5.16393 5.19885 5.31052 5.36267 5.40378 5.45350 5.57095 5.70014 5.73946 5.78983 5.84460 6.04746 6.13331 6.19735 6.26252 6.39234 6.43844 6.51116 6.63077 6.91363 6.94511 7.07124 7.27186 7.51325 7.52043 7.62676 7.67364 7.84069 8.15179 8.19623 8.74699 9.40587 9.52792 10.87303 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.024853 B = 0.003730 C = 0.003577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.342599 B = 7505.440776 C = 7826.480019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 N -0.463 5.463 3 C 0.016 3.984 4 C 0.375 3.625 5 N -0.514 5.514 6 C -0.012 4.012 7 C -0.001 4.001 8 C 0.120 3.880 9 N -0.512 5.512 10 C 0.040 3.960 11 C -0.118 4.118 12 C 0.244 3.756 13 O -0.595 6.595 14 C -0.529 4.529 15 H 0.061 0.939 16 C 0.068 3.932 17 N -0.899 5.899 18 Si 0.900 3.100 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.273 1.273 22 C 0.054 3.946 23 N -0.452 5.452 24 C 0.078 3.922 25 H 0.044 0.956 26 H 0.073 0.927 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.040 0.960 31 H 0.167 0.833 32 H 0.057 0.943 33 H 0.075 0.925 34 H 0.061 0.939 35 H 0.035 0.965 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.384 0.616 39 H 0.267 0.733 40 H 0.038 0.962 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.087 0.913 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.575 -0.422 -15.374 17.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 N -0.186 5.186 3 C -0.131 4.131 4 C 0.023 3.977 5 N -0.238 5.238 6 C -0.160 4.160 7 C -0.115 4.115 8 C -0.010 4.010 9 N -0.237 5.237 10 C -0.088 4.088 11 C -0.157 4.157 12 C 0.204 3.796 13 O -0.405 6.405 14 C -0.567 4.567 15 H 0.080 0.920 16 C -0.134 4.134 17 N -0.539 5.539 18 Si 0.728 3.272 19 H -0.206 1.206 20 H -0.211 1.211 21 H -0.198 1.198 22 C -0.073 4.073 23 N -0.139 5.139 24 C -0.064 4.064 25 H 0.063 0.937 26 H 0.091 0.909 27 H 0.098 0.902 28 H 0.094 0.906 29 H 0.101 0.899 30 H 0.058 0.942 31 H 0.184 0.816 32 H 0.075 0.925 33 H 0.094 0.906 34 H 0.079 0.921 35 H 0.054 0.946 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.235 0.765 39 H 0.077 0.923 40 H 0.056 0.944 41 H 0.097 0.903 42 H 0.095 0.905 43 H 0.106 0.894 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -8.005 -0.497 -16.542 18.384 hybrid contribution 1.180 0.784 1.754 2.255 sum -6.825 0.287 -14.788 16.289 Atomic orbital electron populations 1.22217 0.83006 1.03712 1.01167 1.58734 1.10910 1.13451 1.35485 1.22656 1.01565 0.86896 1.02005 1.20935 0.80584 1.02457 0.93693 1.70571 1.32473 1.16662 1.04101 1.21850 0.88357 1.05251 1.00570 1.20990 0.97648 1.02238 0.90650 1.20614 0.91459 0.93462 0.95420 1.64920 1.06290 1.35082 1.17397 1.23215 0.94062 0.98564 0.92953 1.22977 0.97165 0.99912 0.95632 1.19327 0.92235 0.84506 0.83497 1.86078 1.96860 1.37516 1.20038 1.21692 1.07124 1.26016 1.01871 0.92032 1.25012 0.96319 0.96158 0.95864 1.69619 1.33638 1.43282 1.07409 0.86466 0.82720 0.80687 0.77356 1.20595 1.21129 1.19812 1.22869 0.92888 0.97335 0.94222 1.44993 1.05984 1.40753 1.22121 1.22023 0.87772 1.00769 0.95875 0.93699 0.90852 0.90232 0.90633 0.89887 0.94153 0.81621 0.92462 0.90637 0.92089 0.94621 0.91752 0.91670 0.76452 0.92331 0.94388 0.90329 0.90501 0.89384 0.89888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.47 8.92 60.06 0.54 1.01 16 2 N -0.46 -5.46 5.04 -190.47 -0.96 -6.42 16 3 C 0.02 0.15 9.35 60.06 0.56 0.71 16 4 C 0.38 5.51 7.14 -319.61 -2.28 3.23 16 5 N -0.51 -8.44 10.31 -13.91 -0.14 -8.59 16 6 C -0.01 -0.19 11.31 -17.79 -0.20 -0.39 16 7 C 0.00 -0.02 5.60 -81.33 -0.46 -0.47 16 8 C 0.12 1.87 5.07 -4.98 -0.03 1.84 16 9 N -0.51 -9.62 5.34 -231.90 -1.24 -10.86 16 10 C 0.04 0.79 5.41 -1.90 -0.01 0.78 16 11 C -0.12 -2.76 5.49 -24.87 -0.14 -2.89 16 12 C 0.24 6.02 0.99 -90.41 -0.09 5.93 16 13 O -0.59 -15.44 12.93 -35.23 -0.46 -15.90 16 14 C -0.53 -14.09 8.10 -34.44 -0.28 -14.37 16 15 H 0.06 1.63 7.34 -52.49 -0.39 1.25 16 16 C 0.07 1.80 5.26 -17.82 -0.09 1.70 16 17 N -0.90 -24.02 10.88 55.43 0.60 -23.42 16 18 Si 0.90 20.64 29.54 -169.99 -5.02 15.62 16 19 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 20 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 21 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 22 C 0.05 1.15 6.17 -2.75 -0.02 1.13 16 23 N -0.45 -6.38 3.20 -120.30 -0.38 -6.76 16 24 C 0.08 0.83 9.26 59.84 0.55 1.39 16 25 H 0.04 0.50 8.10 -51.93 -0.42 0.08 16 26 H 0.07 0.54 8.12 -51.93 -0.42 0.12 16 27 H 0.08 0.87 8.10 -51.93 -0.42 0.45 16 28 H 0.08 0.67 5.19 -51.93 -0.27 0.40 16 29 H 0.08 0.57 8.12 -51.93 -0.42 0.15 16 30 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.17 2.44 8.06 -52.49 -0.42 2.01 16 32 H 0.06 0.89 7.97 -51.92 -0.41 0.47 16 33 H 0.08 1.06 7.35 -51.93 -0.38 0.68 16 34 H 0.06 1.21 7.94 -51.93 -0.41 0.79 16 35 H 0.04 0.70 8.01 -51.93 -0.42 0.28 16 36 H 0.06 1.57 8.05 -51.93 -0.42 1.15 16 37 H 0.06 1.63 7.85 -51.93 -0.41 1.22 16 38 H 0.38 10.18 7.05 45.56 0.32 10.50 16 39 H 0.27 6.83 8.31 -40.82 -0.34 6.50 16 40 H 0.04 0.79 7.49 -51.93 -0.39 0.40 16 41 H 0.08 1.66 7.39 -51.93 -0.38 1.28 16 42 H 0.08 0.80 7.51 -51.93 -0.39 0.41 16 43 H 0.09 0.89 7.20 -51.93 -0.37 0.51 16 44 H 0.08 0.73 7.79 -51.93 -0.40 0.32 16 LS Contribution 347.72 15.07 5.24 5.24 Total: -1.00 -29.79 347.72 -10.69 -40.48 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: -6.39 Total: 11.02 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: -1.94 Total: -0.42 kcal Atomic # 7 Polarization: -53.92 SS G_CDS: -2.12 Total: -56.05 kcal Atomic # 8 Polarization: -15.44 SS G_CDS: -0.46 Total: -15.90 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -29.79 -10.69 -40.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592522318.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.288 kcal (2) G-P(sol) polarization free energy of solvation -29.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds