Wall clock time and date at job start Tue Mar 31 2020 03:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36895 * 125.31365 * 2 1 4 4 C 1.34291 * 109.51031 * 179.97438 * 3 2 1 5 5 C 1.46748 * 107.47580 * 0.02562 * 4 3 2 6 6 N 1.30890 * 126.85297 * 179.97438 * 5 4 3 7 7 C 1.46496 * 119.99766 * 0.02562 * 6 5 4 8 8 C 1.53006 * 109.46995 * 120.00385 * 7 6 5 9 9 N 1.46504 * 109.46883 * 180.02562 * 8 7 6 10 10 C 1.34775 * 119.99531 * 179.97438 * 9 8 7 11 11 O 1.21279 * 120.00300 * 0.02562 * 10 9 8 12 12 C 1.50703 * 119.99773 * 179.97438 * 10 9 8 13 13 C 1.53006 * 109.47126 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.47127 * 180.02562 * 13 12 10 15 15 C 1.52996 * 109.46947 * 179.97438 * 14 13 12 16 16 C 1.50703 * 109.46946 * 179.97438 * 15 14 13 17 17 H 1.07998 * 120.00275 * 0.02562 * 16 15 14 18 18 C 1.37885 * 119.99908 * 180.02562 * 16 15 14 19 19 N 1.31511 * 119.99697 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99899 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47276 * 59.99363 * 20 18 16 22 22 H 1.48496 * 109.46966 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.46926 * 299.99492 * 20 18 16 24 24 N 1.38437 * 106.29888 * 0.25855 * 5 4 3 25 25 H 0.96997 * 126.32678 * 179.70459 * 24 5 4 26 26 H 1.09000 * 109.46711 * 90.02325 * 1 2 3 27 27 H 1.08995 * 109.47173 * 210.02282 * 1 2 3 28 28 H 1.09001 * 109.47208 * 330.02359 * 1 2 3 29 29 H 1.07993 * 125.24243 * 0.02562 * 3 2 1 30 30 H 1.07995 * 126.26631 * 180.02562 * 4 3 2 31 31 H 1.09001 * 109.47464 * 0.02562 * 7 6 5 32 32 H 1.09001 * 109.47459 * 240.00362 * 7 6 5 33 33 H 1.09001 * 109.47002 * 299.99701 * 8 7 6 34 34 H 1.08993 * 109.46955 * 60.00138 * 8 7 6 35 35 H 0.96992 * 119.99966 * 359.97438 * 9 8 7 36 36 H 1.08998 * 109.47224 * 299.99707 * 12 10 9 37 37 H 1.08993 * 109.47046 * 60.00641 * 12 10 9 38 38 H 1.09001 * 109.46998 * 300.00313 * 13 12 10 39 39 H 1.08996 * 109.46884 * 59.99429 * 13 12 10 40 40 H 1.09001 * 109.46832 * 299.99679 * 14 13 12 41 41 H 1.08996 * 109.46952 * 59.99698 * 14 13 12 42 42 H 1.08992 * 109.47549 * 300.00253 * 15 14 13 43 43 H 1.09004 * 109.47108 * 59.99946 * 15 14 13 44 44 H 0.97007 * 119.99539 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2563 1.1171 0.0000 4 6 3.5484 0.7513 0.0006 5 6 3.5913 -0.7155 0.0003 6 7 4.6611 -1.4696 0.0003 7 6 5.9907 -0.8547 0.0010 8 6 6.7560 -1.2959 1.2502 9 7 8.0855 -0.6804 1.2512 10 6 8.9416 -0.9274 2.2625 11 8 8.6115 -1.6594 3.1713 12 6 10.3093 -0.2947 2.2633 13 6 11.0746 -0.7359 3.5126 14 6 12.4630 -0.0931 3.5137 15 6 13.2280 -0.5337 4.7633 16 6 14.5958 0.0989 4.7641 17 1 14.8899 0.7505 3.9546 18 6 15.4718 -0.1541 5.7984 19 7 15.1135 -0.9471 6.7844 20 14 17.1669 0.6307 5.7997 21 1 17.0280 2.1092 5.8007 22 1 17.9099 0.2019 7.0118 23 1 17.9107 0.2042 4.5872 24 7 2.2745 -1.1426 -0.0064 25 1 1.9690 -2.0633 -0.0122 26 1 -0.3633 -0.0004 -1.0277 27 1 -0.3633 -0.8897 0.5142 28 1 -0.3634 0.8902 0.5135 29 1 1.8968 2.1354 0.0004 30 1 4.4003 1.4152 0.0011 31 1 5.8891 0.2306 0.0020 32 1 6.5365 -1.1679 -0.8890 33 1 6.2103 -0.9826 2.1402 34 1 6.8577 -2.3811 1.2496 35 1 8.3495 -0.0953 0.5242 36 1 10.8553 -0.6084 1.3736 37 1 10.2077 0.7905 2.2635 38 1 10.5288 -0.4226 4.4025 39 1 11.1762 -1.8211 3.5120 40 1 13.0090 -0.4061 2.6237 41 1 12.3609 0.9921 3.5144 42 1 12.6819 -0.2205 5.6530 43 1 13.3300 -1.6190 4.7630 44 1 15.7297 -1.1248 7.5122 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592948278.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:41:48 Heat of formation + Delta-G solvation = 44.448592 kcal Electronic energy + Delta-G solvation = -21682.777651 eV Core-core repulsion = 18251.104488 eV Total energy + Delta-G solvation = -3431.673163 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.01393 -39.48132 -36.34476 -34.85433 -34.36820 -32.56846 -32.17451 -31.82396 -29.91929 -28.42828 -25.93177 -25.26974 -23.13286 -22.10619 -21.91077 -20.58990 -19.98155 -19.80834 -18.14651 -16.60801 -16.18960 -15.99886 -15.89610 -15.78017 -15.52647 -15.11556 -14.45125 -14.34831 -14.04236 -14.01036 -13.77326 -13.35267 -13.33648 -13.07410 -12.52259 -12.30419 -12.11580 -11.59470 -11.56205 -11.49047 -10.90251 -10.66724 -10.47908 -10.42584 -10.31563 -9.84343 -9.67904 -9.52114 -9.22722 -9.12570 -8.95826 -8.91285 -8.24055 -7.38989 -5.88992 -3.91370 1.24636 1.32823 2.76175 2.91135 3.21728 3.39802 3.43850 3.46219 3.49314 4.16234 4.27985 4.49692 4.54239 4.66842 4.74334 4.90947 4.99086 5.17122 5.26740 5.37152 5.40946 5.45856 5.47426 5.50700 5.62199 5.94875 5.95292 6.06805 6.25023 6.35389 6.41719 6.52760 6.65959 6.89352 6.94489 7.12737 7.21440 7.28962 7.62106 7.81015 7.98264 8.06596 8.13099 8.45276 8.54813 9.16239 9.71811 11.22284 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.050145 B = 0.001644 C = 0.001638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.250129 B =17028.711827 C =17094.627856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.416 5.416 3 C 0.146 3.854 4 C -0.323 4.323 5 C 0.428 3.572 6 N -0.624 5.624 7 C 0.073 3.927 8 C 0.126 3.874 9 N -0.738 5.738 10 C 0.511 3.489 11 O -0.536 6.536 12 C -0.138 4.138 13 C -0.104 4.104 14 C -0.110 4.110 15 C 0.019 3.981 16 C -0.521 4.521 17 H 0.054 0.946 18 C 0.055 3.945 19 N -0.895 5.895 20 Si 0.892 3.108 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.277 1.277 24 N -0.517 5.517 25 H 0.442 0.558 26 H 0.066 0.934 27 H 0.079 0.921 28 H 0.093 0.907 29 H 0.182 0.818 30 H 0.156 0.844 31 H 0.044 0.956 32 H 0.073 0.927 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.398 0.602 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.046 0.954 41 H 0.046 0.954 42 H 0.016 0.984 43 H 0.016 0.984 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.554 5.671 -19.077 39.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.210 5.210 3 C 0.015 3.985 4 C -0.358 4.358 5 C 0.156 3.844 6 N -0.358 5.358 7 C -0.058 4.058 8 C 0.001 3.999 9 N -0.392 5.392 10 C 0.298 3.702 11 O -0.412 6.412 12 C -0.178 4.178 13 C -0.142 4.142 14 C -0.148 4.148 15 C -0.018 4.018 16 C -0.559 4.559 17 H 0.072 0.928 18 C -0.146 4.146 19 N -0.535 5.535 20 Si 0.719 3.281 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 N -0.252 5.252 25 H 0.289 0.711 26 H 0.084 0.916 27 H 0.098 0.902 28 H 0.112 0.888 29 H 0.199 0.801 30 H 0.174 0.826 31 H 0.063 0.937 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.231 0.769 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.034 0.966 43 H 0.034 0.966 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -33.813 4.054 -18.234 38.629 hybrid contribution 0.880 1.110 -0.326 1.454 sum -32.933 5.165 -18.560 38.154 Atomic orbital electron populations 1.21877 0.73885 1.04627 1.02917 1.46015 1.02945 0.97065 1.75011 1.22093 0.90730 0.90629 0.95071 1.22524 0.96899 0.94593 1.21754 1.20301 0.84770 0.88794 0.90503 1.72018 0.96043 1.33006 1.34685 1.21791 0.89696 0.97039 0.97269 1.21218 0.82259 0.98679 0.97739 1.46043 1.15719 1.51443 1.25995 1.21070 0.86922 0.81049 0.81145 1.90704 1.77783 1.37012 1.35728 1.21785 0.92098 1.01522 1.02389 1.21449 0.96264 1.01270 0.95179 1.21648 0.93349 0.98913 1.00877 1.19098 0.94147 0.96685 0.91844 1.21265 0.99412 1.28478 1.06737 0.92808 1.25041 0.98477 0.95364 0.95672 1.69971 1.36062 1.36801 1.10632 0.86672 0.84432 0.79672 0.77275 1.20315 1.21348 1.20309 1.43806 1.00101 1.00671 1.80614 0.71103 0.91596 0.90210 0.88833 0.80066 0.82611 0.93739 0.90876 0.92138 0.91169 0.76867 0.89178 0.89226 0.91860 0.91817 0.93487 0.93510 0.96589 0.96577 0.93040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.04 11.43 59.84 0.68 0.73 16 2 N -0.42 -1.89 4.04 -67.92 -0.27 -2.16 16 3 C 0.15 0.65 11.38 -16.68 -0.19 0.46 16 4 C -0.32 -2.37 10.08 -37.54 -0.38 -2.75 16 5 C 0.43 4.19 8.29 -153.74 -1.28 2.91 16 6 N -0.62 -7.41 10.65 -58.59 -0.62 -8.03 16 7 C 0.07 0.77 6.46 -4.04 -0.03 0.74 16 8 C 0.13 1.59 6.00 -4.04 -0.02 1.57 16 9 N -0.74 -8.83 5.56 -60.29 -0.33 -9.17 16 10 C 0.51 8.03 7.83 -10.98 -0.09 7.94 16 11 O -0.54 -10.94 15.98 5.56 0.09 -10.85 16 12 C -0.14 -2.00 5.70 -27.88 -0.16 -2.15 16 13 C -0.10 -1.98 4.50 -26.73 -0.12 -2.10 16 14 C -0.11 -2.38 5.15 -26.73 -0.14 -2.51 16 15 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 16 C -0.52 -15.38 9.11 -34.44 -0.31 -15.70 16 17 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 19 N -0.90 -28.07 13.29 55.43 0.74 -27.33 16 20 Si 0.89 22.31 29.54 -169.99 -5.02 17.29 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 N -0.52 -3.64 7.40 32.40 0.24 -3.41 16 25 H 0.44 2.38 8.96 -182.65 -1.64 0.74 16 26 H 0.07 -0.02 8.14 -51.93 -0.42 -0.45 16 27 H 0.08 -0.01 8.14 -51.93 -0.42 -0.44 16 28 H 0.09 -0.14 8.14 -51.93 -0.42 -0.56 16 29 H 0.18 0.06 8.06 -52.49 -0.42 -0.36 16 30 H 0.16 1.00 6.91 -52.49 -0.36 0.64 16 31 H 0.04 0.40 5.99 -51.93 -0.31 0.09 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.40 3.38 8.47 -40.82 -0.35 3.04 16 36 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 37 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.06 1.29 8.10 -51.93 -0.42 0.87 16 39 H 0.06 1.30 8.10 -51.93 -0.42 0.88 16 40 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 44 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 372.48 15.07 5.61 5.61 Total: -1.00 -39.27 372.48 -10.37 -49.65 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -8.54 Total: -2.68 kcal Atomic # 6 Polarization: -6.66 SS G_CDS: -2.26 Total: -8.93 kcal Atomic # 7 Polarization: -49.84 SS G_CDS: -0.26 Total: -50.10 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: 0.09 Total: -10.85 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -39.27 -10.37 -49.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592948278.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.097 kcal (2) G-P(sol) polarization free energy of solvation -39.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds