Wall clock time and date at job start Tue Mar 31 2020 03:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36895 * 125.31365 * 2 1 4 4 C 1.34291 * 109.51031 * 179.97438 * 3 2 1 5 5 C 1.46748 * 107.47580 * 0.02562 * 4 3 2 6 6 N 1.30890 * 126.85297 * 179.97438 * 5 4 3 7 7 C 1.46496 * 119.99766 * 0.02562 * 6 5 4 8 8 C 1.53006 * 109.46995 * 120.00385 * 7 6 5 9 9 N 1.46504 * 109.46883 * 180.02562 * 8 7 6 10 10 C 1.34775 * 119.99531 * 179.97438 * 9 8 7 11 11 O 1.21279 * 120.00300 * 0.02562 * 10 9 8 12 12 C 1.50703 * 119.99773 * 179.97438 * 10 9 8 13 13 C 1.53006 * 109.47126 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.47127 * 180.02562 * 13 12 10 15 15 C 1.52996 * 109.46947 * 179.97438 * 14 13 12 16 16 C 1.50703 * 109.46946 * 179.97438 * 15 14 13 17 17 H 1.07998 * 120.00275 * 0.02562 * 16 15 14 18 18 C 1.37885 * 119.99908 * 180.02562 * 16 15 14 19 19 N 1.31511 * 119.99697 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99899 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47276 * 59.99363 * 20 18 16 22 22 H 1.48496 * 109.46966 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.46926 * 299.99492 * 20 18 16 24 24 N 1.38437 * 106.29888 * 0.25855 * 5 4 3 25 25 H 0.96997 * 126.32678 * 179.70459 * 24 5 4 26 26 H 1.09000 * 109.46711 * 90.02325 * 1 2 3 27 27 H 1.08995 * 109.47173 * 210.02282 * 1 2 3 28 28 H 1.09001 * 109.47208 * 330.02359 * 1 2 3 29 29 H 1.07993 * 125.24243 * 0.02562 * 3 2 1 30 30 H 1.07995 * 126.26631 * 180.02562 * 4 3 2 31 31 H 1.09001 * 109.47464 * 0.02562 * 7 6 5 32 32 H 1.09001 * 109.47459 * 240.00362 * 7 6 5 33 33 H 1.09001 * 109.47002 * 299.99701 * 8 7 6 34 34 H 1.08993 * 109.46955 * 60.00138 * 8 7 6 35 35 H 0.96992 * 119.99966 * 359.97438 * 9 8 7 36 36 H 1.08998 * 109.47224 * 299.99707 * 12 10 9 37 37 H 1.08993 * 109.47046 * 60.00641 * 12 10 9 38 38 H 1.09001 * 109.46998 * 300.00313 * 13 12 10 39 39 H 1.08996 * 109.46884 * 59.99429 * 13 12 10 40 40 H 1.09001 * 109.46832 * 299.99679 * 14 13 12 41 41 H 1.08996 * 109.46952 * 59.99698 * 14 13 12 42 42 H 1.08992 * 109.47549 * 300.00253 * 15 14 13 43 43 H 1.09004 * 109.47108 * 59.99946 * 15 14 13 44 44 H 0.97007 * 119.99539 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2563 1.1171 0.0000 4 6 3.5484 0.7513 0.0006 5 6 3.5913 -0.7155 0.0003 6 7 4.6611 -1.4696 0.0003 7 6 5.9907 -0.8547 0.0010 8 6 6.7560 -1.2959 1.2502 9 7 8.0855 -0.6804 1.2512 10 6 8.9416 -0.9274 2.2625 11 8 8.6115 -1.6594 3.1713 12 6 10.3093 -0.2947 2.2633 13 6 11.0746 -0.7359 3.5126 14 6 12.4630 -0.0931 3.5137 15 6 13.2280 -0.5337 4.7633 16 6 14.5958 0.0989 4.7641 17 1 14.8899 0.7505 3.9546 18 6 15.4718 -0.1541 5.7984 19 7 15.1135 -0.9471 6.7844 20 14 17.1669 0.6307 5.7997 21 1 17.0280 2.1092 5.8007 22 1 17.9099 0.2019 7.0118 23 1 17.9107 0.2042 4.5872 24 7 2.2745 -1.1426 -0.0064 25 1 1.9690 -2.0633 -0.0122 26 1 -0.3633 -0.0004 -1.0277 27 1 -0.3633 -0.8897 0.5142 28 1 -0.3634 0.8902 0.5135 29 1 1.8968 2.1354 0.0004 30 1 4.4003 1.4152 0.0011 31 1 5.8891 0.2306 0.0020 32 1 6.5365 -1.1679 -0.8890 33 1 6.2103 -0.9826 2.1402 34 1 6.8577 -2.3811 1.2496 35 1 8.3495 -0.0953 0.5242 36 1 10.8553 -0.6084 1.3736 37 1 10.2077 0.7905 2.2635 38 1 10.5288 -0.4226 4.4025 39 1 11.1762 -1.8211 3.5120 40 1 13.0090 -0.4061 2.6237 41 1 12.3609 0.9921 3.5144 42 1 12.6819 -0.2205 5.6530 43 1 13.3300 -1.6190 4.7630 44 1 15.7297 -1.1248 7.5122 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592948278.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:41:47 Heat of formation + Delta-G solvation = 14.899217 kcal Electronic energy + Delta-G solvation = -21684.059009 eV Core-core repulsion = 18251.104488 eV Total energy + Delta-G solvation = -3432.954520 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.48444 -40.74891 -37.24874 -36.55956 -35.32593 -34.58813 -32.81555 -32.23833 -31.54205 -29.48753 -27.33850 -26.05124 -24.45717 -23.34717 -22.50975 -21.80257 -21.44849 -20.77369 -18.64681 -18.39921 -17.80442 -17.05322 -16.98500 -16.47522 -16.30676 -16.11328 -15.98251 -15.45689 -15.01904 -14.65678 -14.54161 -14.46052 -14.26841 -13.94607 -13.65138 -13.57122 -13.27545 -13.18998 -13.02113 -12.77662 -12.51330 -12.35359 -12.14082 -12.09922 -11.35445 -11.34192 -11.19320 -11.15712 -10.79384 -10.52718 -10.33427 -10.12457 -9.88160 -8.16696 -7.93947 -6.29236 0.85339 0.89850 1.41446 1.46002 1.53804 1.66748 2.06861 2.32620 2.43977 2.98160 3.15741 3.83853 3.88190 4.01489 4.07854 4.15883 4.19527 4.23598 4.30737 4.51035 4.54091 4.68491 4.71557 4.79362 4.84598 4.86364 4.87253 4.90588 4.97146 5.07736 5.21274 5.22874 5.35772 5.37518 5.46804 5.59077 5.79983 5.89649 5.97004 6.26944 6.36662 6.58814 6.75494 6.88964 7.30359 7.40277 7.45263 8.95381 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.050145 B = 0.001644 C = 0.001638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.250129 B =17028.711827 C =17094.627856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.410 5.410 3 C 0.172 3.828 4 C -0.368 4.368 5 C 0.414 3.586 6 N -0.679 5.679 7 C 0.087 3.913 8 C 0.134 3.866 9 N -0.715 5.715 10 C 0.509 3.491 11 O -0.594 6.594 12 C -0.125 4.125 13 C -0.097 4.097 14 C -0.095 4.095 15 C 0.017 3.983 16 C -0.544 4.544 17 H 0.067 0.933 18 C -0.007 4.007 19 N -0.938 5.938 20 Si 0.971 3.029 21 H -0.264 1.264 22 H -0.285 1.285 23 H -0.264 1.264 24 N -0.521 5.521 25 H 0.445 0.555 26 H 0.079 0.921 27 H 0.084 0.916 28 H 0.122 0.878 29 H 0.230 0.770 30 H 0.159 0.841 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.039 0.961 34 H 0.044 0.956 35 H 0.419 0.581 36 H 0.121 0.879 37 H 0.122 0.878 38 H 0.041 0.959 39 H 0.040 0.960 40 H 0.062 0.938 41 H 0.063 0.937 42 H -0.016 1.016 43 H -0.017 1.017 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.568 8.580 -21.360 41.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.203 5.203 3 C 0.038 3.962 4 C -0.402 4.402 5 C 0.144 3.856 6 N -0.416 5.416 7 C -0.045 4.045 8 C 0.009 3.991 9 N -0.368 5.368 10 C 0.297 3.703 11 O -0.474 6.474 12 C -0.164 4.164 13 C -0.136 4.136 14 C -0.133 4.133 15 C -0.020 4.020 16 C -0.582 4.582 17 H 0.085 0.915 18 C -0.204 4.204 19 N -0.578 5.578 20 Si 0.795 3.205 21 H -0.188 1.188 22 H -0.211 1.211 23 H -0.189 1.189 24 N -0.255 5.255 25 H 0.293 0.707 26 H 0.097 0.903 27 H 0.103 0.897 28 H 0.140 0.860 29 H 0.246 0.754 30 H 0.176 0.824 31 H 0.078 0.922 32 H 0.094 0.906 33 H 0.057 0.943 34 H 0.063 0.937 35 H 0.257 0.743 36 H 0.139 0.861 37 H 0.141 0.859 38 H 0.060 0.940 39 H 0.059 0.941 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.003 0.997 43 H 0.002 0.998 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -34.902 6.982 -20.586 41.118 hybrid contribution 0.941 0.206 0.395 1.041 sum -33.961 7.188 -20.192 40.159 Atomic orbital electron populations 1.22283 0.71196 1.06313 1.04318 1.46634 1.04280 0.96231 1.73136 1.22834 0.89753 0.92226 0.91366 1.22581 0.98633 0.93268 1.25737 1.20700 0.85165 0.90297 0.89424 1.71960 0.96813 1.34258 1.38592 1.21610 0.89490 0.97757 0.95631 1.21107 0.82408 0.97147 0.98414 1.45811 1.14874 1.50651 1.25502 1.21334 0.87695 0.80335 0.80955 1.90691 1.78900 1.39716 1.38112 1.21672 0.90740 1.03250 1.00783 1.21261 0.95510 0.99696 0.97094 1.21447 0.93779 0.99864 0.98164 1.19067 0.94591 0.94615 0.93696 1.21742 1.00277 1.28815 1.07322 0.91455 1.26113 1.03463 0.95778 0.95057 1.70140 1.37894 1.38324 1.11484 0.85411 0.78336 0.79062 0.77674 1.18834 1.21072 1.18915 1.44044 1.00152 1.01935 1.79347 0.70704 0.90276 0.89681 0.86007 0.75417 0.82370 0.92194 0.90603 0.94288 0.93722 0.74342 0.86102 0.85948 0.93986 0.94085 0.91952 0.91852 0.99742 0.99824 0.92894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 -0.25 11.43 127.77 1.46 1.21 16 2 N -0.41 -2.71 4.04 -368.79 -1.49 -4.20 16 3 C 0.17 1.02 11.38 83.00 0.94 1.96 16 4 C -0.37 -4.99 10.08 23.59 0.24 -4.76 16 5 C 0.41 8.17 8.29 135.71 1.13 9.30 16 6 N -0.68 -16.90 10.65 -339.29 -3.61 -20.51 16 7 C 0.09 1.85 6.46 86.38 0.56 2.41 16 8 C 0.13 3.56 6.00 86.38 0.52 4.08 16 9 N -0.71 -16.66 5.56 -463.05 -2.57 -19.23 16 10 C 0.51 15.91 7.83 87.66 0.69 16.60 16 11 O -0.59 -25.34 15.98 -3.03 -0.05 -25.39 16 12 C -0.12 -3.38 5.70 29.85 0.17 -3.21 16 13 C -0.10 -3.77 4.50 30.60 0.14 -3.63 16 14 C -0.10 -4.05 5.15 30.59 0.16 -3.89 16 15 C 0.02 0.99 4.97 29.85 0.15 1.14 16 16 C -0.54 -32.28 9.11 25.60 0.23 -32.04 16 17 H 0.07 3.72 7.74 -2.91 -0.02 3.70 16 18 C -0.01 -0.42 5.46 84.66 0.46 0.04 16 19 N -0.94 -60.25 13.29 21.45 0.28 -59.96 16 20 Si 0.97 45.58 29.54 68.60 2.03 47.61 16 21 H -0.26 -11.72 7.11 99.48 0.71 -11.02 16 22 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 23 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 24 N -0.52 -7.05 7.40 -51.42 -0.38 -7.43 16 25 H 0.45 4.81 8.96 -213.37 -1.91 2.90 16 26 H 0.08 -0.33 8.14 -2.39 -0.02 -0.35 16 27 H 0.08 -0.25 8.14 -2.39 -0.02 -0.27 16 28 H 0.12 -0.91 8.14 -2.39 -0.02 -0.93 16 29 H 0.23 -0.97 8.06 -2.91 -0.02 -1.00 16 30 H 0.16 1.91 6.91 -2.91 -0.02 1.89 16 31 H 0.06 1.05 5.99 -2.39 -0.01 1.04 16 32 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.42 6.22 8.47 -92.71 -0.79 5.43 16 36 H 0.12 2.60 8.14 -2.39 -0.02 2.58 16 37 H 0.12 2.58 8.14 -2.39 -0.02 2.56 16 38 H 0.04 1.77 8.10 -2.39 -0.02 1.75 16 39 H 0.04 1.74 8.10 -2.39 -0.02 1.72 16 40 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 41 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 42 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 43 H -0.02 -1.04 8.14 -2.38 -0.02 -1.06 16 44 H 0.26 15.81 8.31 -92.70 -0.77 15.04 16 Total: -1.00 -90.81 372.48 -0.66 -91.46 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -1.70 Total: 8.44 kcal Atomic # 6 Polarization: -17.63 SS G_CDS: 6.84 Total: -10.79 kcal Atomic # 7 Polarization: -103.56 SS G_CDS: -7.77 Total: -111.34 kcal Atomic # 8 Polarization: -25.34 SS G_CDS: -0.05 Total: -25.39 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Total: -90.81 -0.66 -91.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592948278.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.360 kcal (2) G-P(sol) polarization free energy of solvation -90.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds