Wall clock time and date at job start Tue Mar 31 2020 03:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46498 * 109.47135 * 2 1 4 4 C 1.34950 * 126.03609 * 125.26237 * 3 2 1 5 5 C 1.35319 * 107.74458 * 180.14876 * 4 3 2 6 6 C 1.50692 * 126.03891 * 179.87465 * 5 4 3 7 7 N 1.46901 * 109.47233 * 275.10032 * 6 5 4 8 8 C 1.46903 * 110.99929 * 284.08225 * 7 6 5 9 9 C 1.50699 * 109.47193 * 169.99708 * 8 7 6 10 10 O 1.21287 * 119.99868 * 0.02562 * 9 8 7 11 11 N 1.34771 * 120.00158 * 179.97438 * 9 8 7 12 12 C 1.37101 * 120.00345 * 179.97438 * 11 9 8 13 13 H 1.07995 * 119.99787 * 0.02562 * 12 11 9 14 14 C 1.38949 * 120.00065 * 179.97438 * 12 11 9 15 15 N 1.31416 * 119.99722 * 180.02562 * 14 12 11 16 16 Si 1.86799 * 120.00210 * 0.02562 * 14 12 11 17 17 H 1.48503 * 109.46760 * 89.99775 * 16 14 12 18 18 H 1.48498 * 109.47203 * 209.99483 * 16 14 12 19 19 H 1.48500 * 109.47205 * 330.00039 * 16 14 12 20 20 C 1.46898 * 111.00552 * 160.12779 * 7 6 5 21 21 C 1.53001 * 109.46789 * 292.91086 * 20 7 6 22 22 C 1.53006 * 109.46825 * 52.90329 * 20 7 6 23 23 C 1.39866 * 107.91718 * 359.60544 * 5 4 3 24 24 N 1.30837 * 108.20660 * 0.24462 * 23 5 4 25 25 H 1.09012 * 109.47157 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47600 * 299.99665 * 1 2 3 27 27 H 1.09003 * 109.47456 * 60.00018 * 1 2 3 28 28 H 1.08998 * 109.46858 * 239.99854 * 2 1 3 29 29 H 1.08997 * 109.47184 * 120.00329 * 2 1 3 30 30 H 1.07996 * 126.13025 * 359.97438 * 4 3 2 31 31 H 1.09001 * 109.47221 * 155.10318 * 6 5 4 32 32 H 1.09000 * 109.47659 * 35.10197 * 6 5 4 33 33 H 1.08997 * 109.47278 * 49.99786 * 8 7 6 34 34 H 1.09000 * 109.46908 * 289.99687 * 8 7 6 35 35 H 0.97005 * 119.99997 * 359.97438 * 11 9 8 36 36 H 0.97002 * 119.99676 * 180.02562 * 15 14 12 37 37 H 1.08995 * 109.47442 * 172.90447 * 20 7 6 38 38 H 1.08997 * 109.47777 * 60.59968 * 21 20 7 39 39 H 1.09001 * 109.47341 * 180.60418 * 21 20 7 40 40 H 1.09005 * 109.46661 * 300.59846 * 21 20 7 41 41 H 1.08997 * 109.46834 * 60.00476 * 22 20 7 42 42 H 1.08999 * 109.46826 * 180.02562 * 22 20 7 43 43 H 1.08995 * 109.47207 * 300.00262 * 22 20 7 44 44 H 1.08008 * 125.89847 * 180.22234 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8769 1.9197 0.8910 5 6 3.0714 3.2137 0.5462 6 6 3.9548 4.1998 1.2659 7 7 3.2088 4.8053 2.3772 8 6 2.2534 5.8072 1.8858 9 6 1.3421 6.2262 3.0105 10 8 1.4757 5.7387 4.1130 11 7 0.3793 7.1435 2.7916 12 6 -0.4502 7.5244 3.8146 13 1 -0.3317 7.0897 4.7961 14 6 -1.4424 8.4705 3.5889 15 7 -2.2371 8.8360 4.5697 16 14 -1.6469 9.2230 1.8915 17 1 -2.5956 8.4019 1.0971 18 1 -2.1771 10.6039 2.0227 19 1 -0.3305 9.2613 1.2052 20 6 4.1223 5.3904 3.3677 21 6 4.9123 4.2746 4.0545 22 6 5.0916 6.3443 2.6665 23 6 2.3126 3.4723 -0.5999 24 7 1.6808 2.3746 -0.9282 25 1 -0.3634 -1.0278 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8932 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 3.3259 1.4101 1.7307 31 1 4.2695 4.9794 0.5722 32 1 4.8326 3.6844 1.6557 33 1 1.6602 5.3782 1.0783 34 1 2.7967 6.6764 1.5154 35 1 0.2731 7.5343 1.9101 36 1 -2.9301 9.4962 4.4121 37 1 3.5469 5.9399 4.1126 38 1 5.4960 3.7318 3.3111 39 1 5.5824 4.7078 4.7971 40 1 4.2211 3.5890 4.5450 41 1 4.5289 7.1391 2.1772 42 1 5.7697 6.7781 3.4014 43 1 5.6670 5.7948 1.9216 44 1 2.2572 4.4155 -1.1233 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593079673.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:38:38 Heat of formation + Delta-G solvation = 54.144674 kcal Electronic energy + Delta-G solvation = -24259.400817 eV Core-core repulsion = 20828.148107 eV Total energy + Delta-G solvation = -3431.252710 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.16399 -39.00982 -37.14290 -34.58052 -33.83878 -32.05135 -31.55453 -30.50291 -29.83436 -27.23648 -26.81459 -25.01364 -23.95580 -23.24428 -20.69682 -20.47283 -19.57851 -19.01973 -17.99942 -16.98775 -15.93404 -15.70293 -15.42107 -15.08501 -14.80335 -14.33908 -14.05311 -13.95743 -13.61548 -13.17915 -13.14090 -12.90312 -12.88491 -12.50772 -12.33653 -12.24068 -12.20314 -11.88062 -11.77188 -11.53030 -11.46066 -11.21103 -11.01198 -10.86449 -10.54017 -10.36284 -10.29062 -9.91835 -9.44712 -9.33786 -8.41944 -8.31876 -8.10135 -7.75873 -6.25194 -3.75815 1.98020 2.53240 2.85269 3.07315 3.12048 3.19401 3.84613 4.15555 4.23439 4.37195 4.78070 4.84992 4.87435 4.97898 5.04059 5.21001 5.27054 5.29336 5.33682 5.44501 5.52512 5.60030 5.64080 5.66126 5.73133 5.84030 5.86233 5.91031 5.98304 6.04628 6.05983 6.08396 6.25210 6.26124 6.54153 6.64996 6.72426 7.07820 7.38778 7.54583 7.66729 7.77764 8.22086 8.67984 9.02480 9.50180 9.92812 10.88229 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.012157 B = 0.004802 C = 0.003908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2302.625003 B = 5829.926858 C = 7162.570691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.133 3.867 3 N -0.376 5.376 4 C 0.074 3.926 5 C -0.224 4.224 6 C 0.128 3.872 7 N -0.503 5.503 8 C 0.043 3.957 9 C 0.456 3.544 10 O -0.559 6.559 11 N -0.595 5.595 12 C -0.301 4.301 13 H 0.119 0.881 14 C 0.041 3.959 15 N -0.884 5.884 16 Si 0.878 3.122 17 H -0.271 1.271 18 H -0.277 1.277 19 H -0.269 1.269 20 C 0.069 3.931 21 C -0.135 4.135 22 C -0.186 4.186 23 C 0.050 3.950 24 N -0.299 5.299 25 H 0.072 0.928 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.093 0.907 30 H 0.170 0.830 31 H 0.040 0.960 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.048 0.952 35 H 0.369 0.631 36 H 0.272 0.728 37 H 0.109 0.891 38 H 0.046 0.954 39 H 0.052 0.948 40 H 0.063 0.937 41 H 0.053 0.947 42 H 0.057 0.943 43 H 0.052 0.948 44 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.154 -13.280 -11.051 21.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.012 3.988 3 N -0.159 5.159 4 C -0.073 4.073 5 C -0.236 4.236 6 C 0.000 4.000 7 N -0.227 5.227 8 C -0.089 4.089 9 C 0.242 3.758 10 O -0.441 6.441 11 N -0.234 5.234 12 C -0.430 4.430 13 H 0.137 0.863 14 C -0.162 4.162 15 N -0.525 5.525 16 Si 0.704 3.296 17 H -0.197 1.197 18 H -0.203 1.203 19 H -0.195 1.195 20 C -0.039 4.039 21 C -0.193 4.193 22 C -0.245 4.245 23 C -0.136 4.136 24 N -0.120 5.120 25 H 0.091 0.909 26 H 0.083 0.917 27 H 0.088 0.912 28 H 0.098 0.902 29 H 0.112 0.888 30 H 0.188 0.812 31 H 0.058 0.942 32 H 0.099 0.901 33 H 0.106 0.894 34 H 0.066 0.934 35 H 0.202 0.798 36 H 0.083 0.917 37 H 0.126 0.874 38 H 0.065 0.935 39 H 0.071 0.929 40 H 0.082 0.918 41 H 0.072 0.928 42 H 0.076 0.924 43 H 0.071 0.929 44 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 11.928 -14.570 -10.798 21.706 hybrid contribution 0.560 1.799 -1.139 2.201 sum 12.488 -12.771 -11.937 21.483 Atomic orbital electron populations 1.22059 0.93802 1.02639 1.03922 1.21618 0.96158 0.77700 1.03310 1.48613 1.35562 1.10078 1.21637 1.22267 0.94882 0.94858 0.95248 1.19947 1.08597 0.94783 1.00268 1.20347 0.93988 0.94415 0.91273 1.61814 1.16474 1.31847 1.12539 1.21886 0.95211 0.94422 0.97379 1.19716 0.83596 0.82720 0.89755 1.90517 1.71984 1.56508 1.25050 1.42230 1.31079 1.38375 1.11747 1.19416 1.09293 1.21322 0.92982 0.86348 1.25014 0.96280 0.97255 0.97620 1.69626 1.19415 1.32192 1.31260 0.86698 0.78703 0.79865 0.84303 1.19664 1.20264 1.19502 1.21910 0.92338 0.94651 0.95023 1.21768 0.99245 0.98633 0.99625 1.22529 1.00295 1.00483 1.01221 1.23758 0.95875 0.97295 0.96675 1.77262 1.23501 0.97133 1.14085 0.90928 0.91732 0.91167 0.90205 0.88821 0.81238 0.94171 0.90150 0.89412 0.93377 0.79821 0.91735 0.87353 0.93479 0.92856 0.91775 0.92785 0.92363 0.92884 0.80601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.49 10.10 37.16 0.38 -1.12 16 2 C 0.13 1.14 7.23 -4.04 -0.03 1.11 16 3 N -0.38 -4.63 3.68 -61.37 -0.23 -4.85 16 4 C 0.07 0.90 11.36 -17.22 -0.20 0.70 16 5 C -0.22 -2.92 5.13 -105.06 -0.54 -3.46 16 6 C 0.13 1.59 4.04 -4.98 -0.02 1.57 16 7 N -0.50 -7.95 4.10 -229.52 -0.94 -8.89 16 8 C 0.04 0.74 5.16 -4.97 -0.03 0.71 16 9 C 0.46 10.56 7.40 -10.99 -0.08 10.48 16 10 O -0.56 -14.96 13.98 5.55 0.08 -14.88 16 11 N -0.59 -14.51 5.09 -10.97 -0.06 -14.57 16 12 C -0.30 -8.66 10.16 -14.93 -0.15 -8.81 16 13 H 0.12 3.87 7.39 -52.49 -0.39 3.49 16 14 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 15 N -0.88 -26.25 13.96 55.50 0.77 -25.47 16 16 Si 0.88 19.87 27.74 -169.99 -4.71 15.15 16 17 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 18 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 19 H -0.27 -5.57 6.52 56.52 0.37 -5.20 16 20 C 0.07 1.05 2.54 -67.71 -0.17 0.88 16 21 C -0.14 -1.74 9.17 37.16 0.34 -1.40 16 22 C -0.19 -2.36 8.52 37.16 0.32 -2.05 16 23 C 0.05 0.68 11.01 -17.37 -0.19 0.48 16 24 N -0.30 -4.30 12.42 30.63 0.38 -3.92 16 25 H 0.07 0.47 8.14 -51.92 -0.42 0.04 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.09 0.58 8.07 -51.93 -0.42 0.16 16 30 H 0.17 1.62 8.06 -52.49 -0.42 1.20 16 31 H 0.04 0.46 7.33 -51.93 -0.38 0.08 16 32 H 0.08 0.89 5.90 -51.93 -0.31 0.58 16 33 H 0.09 1.45 6.66 -51.93 -0.35 1.10 16 34 H 0.05 0.75 6.45 -51.93 -0.34 0.42 16 35 H 0.37 8.02 5.76 -40.82 -0.24 7.78 16 36 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 37 H 0.11 2.12 5.78 -51.93 -0.30 1.82 16 38 H 0.05 0.51 6.32 -51.93 -0.33 0.18 16 39 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 41 H 0.05 0.72 6.62 -51.93 -0.34 0.38 16 42 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.05 0.58 6.73 -51.93 -0.35 0.23 16 44 H 0.18 1.96 8.06 -52.48 -0.42 1.53 16 LS Contribution 353.45 15.07 5.33 5.33 Total: -1.00 -34.29 353.45 -6.55 -40.85 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: -6.70 Total: 11.10 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: -0.47 Total: 0.15 kcal Atomic # 7 Polarization: -57.63 SS G_CDS: -0.07 Total: -57.70 kcal Atomic # 8 Polarization: -14.96 SS G_CDS: 0.08 Total: -14.88 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -4.71 Total: 15.15 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.29 -6.55 -40.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593079673.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.991 kcal (2) G-P(sol) polarization free energy of solvation -34.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds