Wall clock time and date at job start Tue Mar 31 2020 03:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46498 * 109.47135 * 2 1 4 4 C 1.34950 * 126.03609 * 125.26237 * 3 2 1 5 5 C 1.35319 * 107.74458 * 180.14876 * 4 3 2 6 6 C 1.50692 * 126.03891 * 179.87465 * 5 4 3 7 7 N 1.46901 * 109.47233 * 275.10032 * 6 5 4 8 8 C 1.46903 * 110.99929 * 284.08225 * 7 6 5 9 9 C 1.50699 * 109.47193 * 169.99708 * 8 7 6 10 10 O 1.21287 * 119.99868 * 0.02562 * 9 8 7 11 11 N 1.34771 * 120.00158 * 179.97438 * 9 8 7 12 12 C 1.37101 * 120.00345 * 179.97438 * 11 9 8 13 13 H 1.07995 * 119.99787 * 0.02562 * 12 11 9 14 14 C 1.38949 * 120.00065 * 179.97438 * 12 11 9 15 15 N 1.31416 * 119.99722 * 180.02562 * 14 12 11 16 16 Si 1.86799 * 120.00210 * 0.02562 * 14 12 11 17 17 H 1.48503 * 109.46760 * 89.99775 * 16 14 12 18 18 H 1.48498 * 109.47203 * 209.99483 * 16 14 12 19 19 H 1.48500 * 109.47205 * 330.00039 * 16 14 12 20 20 C 1.46898 * 111.00552 * 160.12779 * 7 6 5 21 21 C 1.53001 * 109.46789 * 292.91086 * 20 7 6 22 22 C 1.53006 * 109.46825 * 52.90329 * 20 7 6 23 23 C 1.39866 * 107.91718 * 359.60544 * 5 4 3 24 24 N 1.30837 * 108.20660 * 0.24462 * 23 5 4 25 25 H 1.09012 * 109.47157 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47600 * 299.99665 * 1 2 3 27 27 H 1.09003 * 109.47456 * 60.00018 * 1 2 3 28 28 H 1.08998 * 109.46858 * 239.99854 * 2 1 3 29 29 H 1.08997 * 109.47184 * 120.00329 * 2 1 3 30 30 H 1.07996 * 126.13025 * 359.97438 * 4 3 2 31 31 H 1.09001 * 109.47221 * 155.10318 * 6 5 4 32 32 H 1.09000 * 109.47659 * 35.10197 * 6 5 4 33 33 H 1.08997 * 109.47278 * 49.99786 * 8 7 6 34 34 H 1.09000 * 109.46908 * 289.99687 * 8 7 6 35 35 H 0.97005 * 119.99997 * 359.97438 * 11 9 8 36 36 H 0.97002 * 119.99676 * 180.02562 * 15 14 12 37 37 H 1.08995 * 109.47442 * 172.90447 * 20 7 6 38 38 H 1.08997 * 109.47777 * 60.59968 * 21 20 7 39 39 H 1.09001 * 109.47341 * 180.60418 * 21 20 7 40 40 H 1.09005 * 109.46661 * 300.59846 * 21 20 7 41 41 H 1.08997 * 109.46834 * 60.00476 * 22 20 7 42 42 H 1.08999 * 109.46826 * 180.02562 * 22 20 7 43 43 H 1.08995 * 109.47207 * 300.00262 * 22 20 7 44 44 H 1.08008 * 125.89847 * 180.22234 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8769 1.9197 0.8910 5 6 3.0714 3.2137 0.5462 6 6 3.9548 4.1998 1.2659 7 7 3.2088 4.8053 2.3772 8 6 2.2534 5.8072 1.8858 9 6 1.3421 6.2262 3.0105 10 8 1.4757 5.7387 4.1130 11 7 0.3793 7.1435 2.7916 12 6 -0.4502 7.5244 3.8146 13 1 -0.3317 7.0897 4.7961 14 6 -1.4424 8.4705 3.5889 15 7 -2.2371 8.8360 4.5697 16 14 -1.6469 9.2230 1.8915 17 1 -2.5956 8.4019 1.0971 18 1 -2.1771 10.6039 2.0227 19 1 -0.3305 9.2613 1.2052 20 6 4.1223 5.3904 3.3677 21 6 4.9123 4.2746 4.0545 22 6 5.0916 6.3443 2.6665 23 6 2.3126 3.4723 -0.5999 24 7 1.6808 2.3746 -0.9282 25 1 -0.3634 -1.0278 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8932 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 3.3259 1.4101 1.7307 31 1 4.2695 4.9794 0.5722 32 1 4.8326 3.6844 1.6557 33 1 1.6602 5.3782 1.0783 34 1 2.7967 6.6764 1.5154 35 1 0.2731 7.5343 1.9101 36 1 -2.9301 9.4962 4.4121 37 1 3.5469 5.9399 4.1126 38 1 5.4960 3.7318 3.3111 39 1 5.5824 4.7078 4.7971 40 1 4.2211 3.5890 4.5450 41 1 4.5289 7.1391 2.1772 42 1 5.7697 6.7781 3.4014 43 1 5.6670 5.7948 1.9216 44 1 2.2572 4.4155 -1.1233 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593079673.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:38:37 Heat of formation + Delta-G solvation = 28.756757 kcal Electronic energy + Delta-G solvation = -24260.501719 eV Core-core repulsion = 20828.148107 eV Total energy + Delta-G solvation = -3432.353612 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.08258 -40.59565 -38.64231 -35.91886 -35.34902 -33.75640 -33.03539 -31.58269 -30.79378 -28.53168 -27.92058 -26.49105 -25.17396 -24.33084 -21.63439 -21.59299 -21.17445 -20.59445 -19.69805 -17.89754 -17.63276 -16.90144 -16.68076 -16.43231 -16.21851 -15.45747 -15.32360 -15.15315 -14.87825 -14.71907 -14.40110 -14.34763 -13.98721 -13.75909 -13.67482 -13.26413 -13.12976 -13.02046 -12.96010 -12.85885 -12.53748 -12.41249 -12.27510 -12.10465 -11.98968 -11.94905 -11.66141 -11.32668 -11.24972 -10.30764 -10.22944 -10.18871 -9.27528 -8.94947 -8.40239 -5.99772 1.07101 1.28944 1.34554 1.42639 1.74229 1.88372 2.00953 2.22800 2.83539 3.16358 3.37530 3.64489 4.05066 4.10929 4.13553 4.18975 4.23071 4.27294 4.34448 4.39666 4.49701 4.55074 4.59308 4.63904 4.76162 4.78331 4.83205 4.88828 4.96421 5.00125 5.10411 5.21627 5.24505 5.31994 5.41882 5.54695 5.56405 5.80990 5.94852 6.21051 6.26416 6.44691 6.63038 6.85066 6.91389 7.43308 8.01508 8.77674 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.012157 B = 0.004802 C = 0.003908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2302.625003 B = 5829.926858 C = 7162.570691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.125 3.875 3 N -0.379 5.379 4 C 0.071 3.929 5 C -0.241 4.241 6 C 0.136 3.864 7 N -0.522 5.522 8 C 0.057 3.943 9 C 0.454 3.546 10 O -0.602 6.602 11 N -0.597 5.597 12 C -0.323 4.323 13 H 0.056 0.944 14 C -0.014 4.014 15 N -0.936 5.936 16 Si 0.960 3.040 17 H -0.261 1.261 18 H -0.273 1.273 19 H -0.232 1.232 20 C 0.066 3.934 21 C -0.128 4.128 22 C -0.178 4.178 23 C 0.041 3.959 24 N -0.333 5.333 25 H 0.100 0.900 26 H 0.040 0.960 27 H 0.050 0.950 28 H 0.096 0.904 29 H 0.121 0.879 30 H 0.193 0.807 31 H 0.057 0.943 32 H 0.099 0.901 33 H 0.102 0.898 34 H 0.076 0.924 35 H 0.387 0.613 36 H 0.278 0.722 37 H 0.056 0.944 38 H 0.075 0.925 39 H 0.062 0.938 40 H 0.041 0.959 41 H 0.046 0.954 42 H 0.064 0.936 43 H 0.079 0.921 44 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.198 -13.807 -14.197 24.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.005 3.995 3 N -0.162 5.162 4 C -0.076 4.076 5 C -0.253 4.253 6 C 0.008 3.992 7 N -0.246 5.246 8 C -0.074 4.074 9 C 0.242 3.758 10 O -0.485 6.485 11 N -0.239 5.239 12 C -0.453 4.453 13 H 0.074 0.926 14 C -0.212 4.212 15 N -0.577 5.577 16 Si 0.780 3.220 17 H -0.185 1.185 18 H -0.198 1.198 19 H -0.155 1.155 20 C -0.042 4.042 21 C -0.185 4.185 22 C -0.236 4.236 23 C -0.145 4.145 24 N -0.155 5.155 25 H 0.118 0.882 26 H 0.060 0.940 27 H 0.069 0.931 28 H 0.114 0.886 29 H 0.139 0.861 30 H 0.210 0.790 31 H 0.075 0.925 32 H 0.117 0.883 33 H 0.120 0.880 34 H 0.093 0.907 35 H 0.222 0.778 36 H 0.088 0.912 37 H 0.074 0.926 38 H 0.094 0.906 39 H 0.081 0.919 40 H 0.060 0.940 41 H 0.065 0.935 42 H 0.083 0.917 43 H 0.098 0.902 44 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 13.998 -15.121 -13.964 24.891 hybrid contribution -0.063 1.821 -0.013 1.822 sum 13.934 -13.300 -13.977 23.799 Atomic orbital electron populations 1.22015 0.94421 1.03778 1.01706 1.21963 0.95650 0.76449 1.05464 1.48936 1.35295 1.10870 1.21116 1.22742 0.94393 0.95046 0.95452 1.20108 1.09322 0.95329 1.00532 1.20384 0.93866 0.94581 0.90347 1.61760 1.17252 1.31510 1.14067 1.21742 0.94869 0.96101 0.94668 1.20943 0.83109 0.80987 0.90734 1.90504 1.72910 1.57534 1.27575 1.42084 1.31099 1.39275 1.11463 1.18989 1.11578 1.22581 0.92114 0.92636 1.26043 0.94911 0.97042 1.03247 1.69804 1.20284 1.33066 1.34568 0.85430 0.80566 0.78488 0.77487 1.18519 1.19799 1.15537 1.21794 0.92421 0.95636 0.94333 1.21705 0.98835 0.97680 1.00313 1.22434 0.99743 0.99793 1.01678 1.24120 0.95601 0.97762 0.97007 1.77204 1.24650 0.98094 1.15526 0.88161 0.94039 0.93120 0.88621 0.86083 0.78970 0.92473 0.88326 0.87982 0.90677 0.77824 0.91246 0.92601 0.90584 0.91886 0.93957 0.93542 0.91699 0.90226 0.79018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.73 10.10 71.98 0.73 -2.00 16 2 C 0.12 1.87 7.23 86.38 0.62 2.49 16 3 N -0.38 -8.65 3.68 -348.08 -1.28 -9.93 16 4 C 0.07 1.55 11.36 83.54 0.95 2.50 16 5 C -0.24 -5.64 5.13 -20.15 -0.10 -5.75 16 6 C 0.14 2.91 4.04 85.55 0.35 3.25 16 7 N -0.52 -15.56 4.10 -880.07 -3.61 -19.17 16 8 C 0.06 1.90 5.16 85.56 0.44 2.34 16 9 C 0.45 21.37 7.40 87.66 0.65 22.02 16 10 O -0.60 -33.89 13.98 -3.05 -0.04 -33.93 16 11 N -0.60 -29.41 5.09 -307.00 -1.56 -30.97 16 12 C -0.32 -19.46 10.16 84.04 0.85 -18.61 16 13 H 0.06 3.95 7.39 -2.91 -0.02 3.93 16 14 C -0.01 -0.81 5.50 84.93 0.47 -0.34 16 15 N -0.94 -57.65 13.96 21.66 0.30 -57.35 16 16 Si 0.96 40.28 27.74 68.60 1.90 42.19 16 17 H -0.26 -10.51 7.11 99.48 0.71 -9.81 16 18 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 19 H -0.23 -8.27 6.52 99.48 0.65 -7.62 16 20 C 0.07 1.96 2.54 44.92 0.11 2.08 16 21 C -0.13 -3.09 9.17 71.98 0.66 -2.43 16 22 C -0.18 -4.01 8.52 71.98 0.61 -3.40 16 23 C 0.04 1.01 11.01 85.24 0.94 1.95 16 24 N -0.33 -9.12 12.42 -57.02 -0.71 -9.83 16 25 H 0.10 1.09 8.14 -2.38 -0.02 1.08 16 26 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.12 1.14 8.07 -2.39 -0.02 1.12 16 30 H 0.19 3.11 8.06 -2.91 -0.02 3.09 16 31 H 0.06 1.06 7.33 -2.39 -0.02 1.04 16 32 H 0.10 1.75 5.90 -2.39 -0.01 1.74 16 33 H 0.10 3.12 6.66 -2.39 -0.02 3.11 16 34 H 0.08 2.11 6.45 -2.39 -0.02 2.09 16 35 H 0.39 16.08 5.76 -92.70 -0.53 15.55 16 36 H 0.28 15.66 8.31 -92.71 -0.77 14.89 16 37 H 0.06 2.26 5.78 -2.39 -0.01 2.24 16 38 H 0.08 1.38 6.32 -2.39 -0.02 1.36 16 39 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.04 1.19 8.14 -2.38 -0.02 1.17 16 41 H 0.05 1.11 6.62 -2.39 -0.02 1.09 16 42 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.08 1.38 6.73 -2.39 -0.02 1.37 16 44 H 0.19 3.78 8.06 -2.91 -0.02 3.75 16 Total: -1.00 -81.21 353.45 2.69 -78.52 By element: Atomic # 1 Polarization: 35.96 SS G_CDS: 0.41 Total: 36.37 kcal Atomic # 6 Polarization: -3.18 SS G_CDS: 7.28 Total: 4.10 kcal Atomic # 7 Polarization: -120.39 SS G_CDS: -6.86 Total: -127.25 kcal Atomic # 8 Polarization: -33.89 SS G_CDS: -0.04 Total: -33.93 kcal Atomic # 14 Polarization: 40.28 SS G_CDS: 1.90 Total: 42.19 kcal Total: -81.21 2.69 -78.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593079673.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.278 kcal (2) G-P(sol) polarization free energy of solvation -81.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds