Wall clock time and date at job start Tue Mar 31 2020 03:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47181 * 2 1 4 4 H 1.09003 * 109.47309 * 303.86073 * 3 2 1 5 5 C 1.50693 * 109.47324 * 183.85789 * 3 2 1 6 6 H 1.08008 * 120.00263 * 239.99996 * 5 3 2 7 7 C 1.37877 * 120.00579 * 59.99970 * 5 3 2 8 8 N 1.31518 * 119.99285 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 120.00537 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47200 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.47058 * 119.99983 * 9 7 5 12 12 H 1.48498 * 109.47317 * 239.99992 * 9 7 5 13 13 N 1.46905 * 109.47012 * 63.85505 * 3 2 1 14 14 C 1.46898 * 110.99774 * 208.70877 * 13 3 2 15 15 H 1.08993 * 109.47650 * 321.16885 * 14 13 3 16 16 C 1.53003 * 109.47039 * 81.17248 * 14 13 3 17 17 C 1.50708 * 109.47103 * 201.16913 * 14 13 3 18 18 N 1.31423 * 119.32725 * 314.72887 * 17 14 13 19 19 C 1.34684 * 120.30093 * 179.76930 * 18 17 14 20 20 N 1.31257 * 120.48686 * 180.25254 * 19 18 17 21 21 N 1.38211 * 119.03642 * 0.49759 * 19 18 17 22 22 H 0.96995 * 120.63323 * 179.78146 * 21 19 18 23 23 C 1.36523 * 118.74012 * 359.75482 * 21 19 18 24 24 N 1.36535 * 120.18734 * 179.97438 * 23 21 19 25 25 C 1.46504 * 119.99614 * 186.04985 * 24 23 21 26 26 C 1.46493 * 120.00184 * 6.04831 * 24 23 21 27 27 N 1.32353 * 119.61877 * 0.02562 * 23 21 19 28 28 H 1.09004 * 109.47354 * 294.98741 * 1 2 3 29 29 H 1.09004 * 109.47264 * 54.98992 * 1 2 3 30 30 H 1.09004 * 109.47065 * 174.98991 * 1 2 3 31 31 H 1.09001 * 109.47234 * 119.99691 * 2 1 3 32 32 H 1.08994 * 109.47329 * 240.00085 * 2 1 3 33 33 H 0.97007 * 119.99781 * 180.02562 * 8 7 5 34 34 H 1.00900 * 110.99827 * 84.75558 * 13 3 2 35 35 H 1.08998 * 109.46993 * 184.88379 * 16 14 13 36 36 H 1.08999 * 109.46910 * 304.87908 * 16 14 13 37 37 H 1.08994 * 109.47109 * 64.88487 * 16 14 13 38 38 H 0.97005 * 120.00112 * 0.25113 * 20 19 18 39 39 H 1.09001 * 109.47409 * 90.00073 * 25 24 23 40 40 H 1.09004 * 109.46829 * 209.99865 * 25 24 23 41 41 H 1.08995 * 109.47002 * 329.99697 * 25 24 23 42 42 H 1.08995 * 109.47582 * 5.42882 * 26 24 23 43 43 H 1.09001 * 109.47424 * 125.43025 * 26 24 23 44 44 H 1.09001 * 109.47375 * 245.42443 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6213 1.9760 -0.8534 5 6 3.5439 1.4436 -0.0956 6 1 4.1346 1.8934 0.6888 7 6 4.1660 0.8705 -1.1844 8 7 3.4467 0.3232 -2.1398 9 14 6.0302 0.8712 -1.3025 10 1 6.6016 1.5433 -0.1080 11 1 6.5228 -0.5283 -1.3655 12 1 6.4483 1.5987 -2.5277 13 7 1.6278 2.1076 1.2433 14 6 1.4671 3.5534 1.0386 15 1 2.2528 3.9161 0.3759 16 6 0.1005 3.8305 0.4090 17 6 1.5621 4.2622 2.3652 18 7 0.9096 3.7817 3.3999 19 6 0.9843 4.3968 4.5958 20 7 0.3381 3.9173 5.6328 21 7 1.7472 5.5431 4.7140 22 1 1.8147 6.0065 5.5635 23 6 2.4046 6.0107 3.6126 24 7 3.1661 7.1409 3.6959 25 6 3.7615 7.7137 2.4860 26 6 3.3878 7.7807 4.9949 27 7 2.2985 5.3627 2.4634 28 1 -0.3634 0.4341 0.9315 29 1 -0.3634 0.5896 -0.8417 30 1 -0.3633 -1.0238 -0.0898 31 1 1.8933 -0.5138 0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 3.8844 -0.0804 -2.9057 34 1 2.2813 1.9183 1.9884 35 1 0.0158 4.8923 0.1774 36 1 -0.0019 3.2495 -0.5075 37 1 -0.6859 3.5474 1.1086 38 1 -0.1954 3.1122 5.5420 39 1 3.0698 8.4317 2.0455 40 1 4.6933 8.2175 2.7432 41 1 3.9646 6.9180 1.7693 42 1 2.9527 7.1651 5.7822 43 1 4.4584 7.8893 5.1685 44 1 2.9173 8.7640 5.0007 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594010914.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:43:28 Heat of formation + Delta-G solvation = 96.539524 kcal Electronic energy + Delta-G solvation = -24450.550463 eV Core-core repulsion = 21053.428883 eV Total energy + Delta-G solvation = -3397.121580 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.186 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.40320 -37.98414 -36.73364 -35.07404 -33.59267 -32.66201 -31.27915 -30.53587 -28.87446 -28.48329 -26.80714 -25.95045 -24.35262 -22.58754 -22.09564 -20.27366 -19.41006 -19.02932 -18.39051 -17.21862 -16.56307 -16.32117 -15.64412 -15.11826 -14.81759 -14.69916 -14.41698 -13.87105 -13.43805 -13.10384 -13.00173 -12.68503 -12.55608 -12.33624 -12.04626 -11.83853 -11.48489 -11.35274 -11.21388 -11.11898 -10.90934 -10.78509 -10.66580 -10.55258 -10.09167 -9.53449 -9.48333 -9.37594 -9.16697 -9.07908 -8.94660 -8.32605 -7.77275 -7.17455 -5.95335 -4.07641 0.97087 1.82241 2.10380 2.76971 3.28197 3.36759 3.40154 4.01067 4.06948 4.40688 4.43479 4.52241 4.72415 4.80142 4.99803 5.23646 5.28569 5.39872 5.47219 5.58016 5.70108 5.85385 6.02545 6.20758 6.30305 6.33822 6.44455 6.51496 6.60034 6.64658 6.84359 6.88125 7.16896 7.19777 7.30592 7.37174 7.53534 7.66267 7.83492 8.15732 8.19682 8.36049 8.41478 8.67978 8.78151 9.05224 9.59564 11.04644 Molecular weight = 294.19amu Principal moments of inertia in cm(-1) A = 0.014333 B = 0.004864 C = 0.004023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.029290 B = 5755.296913 C = 6959.075734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.103 4.103 3 C 0.214 3.786 4 H 0.036 0.964 5 C -0.542 4.542 6 H 0.052 0.948 7 C 0.069 3.931 8 N -0.884 5.884 9 Si 0.887 3.113 10 H -0.276 1.276 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.665 5.665 14 C 0.155 3.845 15 H 0.073 0.927 16 C -0.127 4.127 17 C 0.440 3.560 18 N -0.589 5.589 19 C 0.558 3.442 20 N -0.773 5.773 21 N -0.661 5.661 22 H 0.413 0.587 23 C 0.664 3.336 24 N -0.589 5.589 25 C 0.098 3.902 26 C 0.079 3.921 27 N -0.632 5.632 28 H 0.050 0.950 29 H 0.036 0.964 30 H 0.022 0.978 31 H 0.030 0.970 32 H 0.089 0.911 33 H 0.260 0.740 34 H 0.330 0.670 35 H 0.044 0.956 36 H 0.070 0.930 37 H 0.060 0.940 38 H 0.359 0.641 39 H 0.061 0.939 40 H 0.075 0.925 41 H 0.098 0.902 42 H 0.072 0.928 43 H 0.080 0.920 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.291 16.482 10.102 19.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.142 4.142 3 C 0.106 3.894 4 H 0.054 0.946 5 C -0.582 4.582 6 H 0.070 0.930 7 C -0.134 4.134 8 N -0.522 5.522 9 Si 0.715 3.285 10 H -0.201 1.201 11 H -0.210 1.210 12 H -0.210 1.210 13 N -0.296 5.296 14 C 0.043 3.957 15 H 0.090 0.910 16 C -0.186 4.186 17 C 0.162 3.838 18 N -0.324 5.324 19 C 0.187 3.813 20 N -0.414 5.414 21 N -0.299 5.299 22 H 0.253 0.747 23 C 0.304 3.696 24 N -0.306 5.306 25 C -0.044 4.044 26 C -0.064 4.064 27 N -0.375 5.375 28 H 0.069 0.931 29 H 0.055 0.945 30 H 0.041 0.959 31 H 0.049 0.951 32 H 0.107 0.893 33 H 0.070 0.930 34 H 0.147 0.853 35 H 0.063 0.937 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.178 0.822 39 H 0.080 0.920 40 H 0.093 0.907 41 H 0.116 0.884 42 H 0.090 0.910 43 H 0.099 0.901 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.188 16.090 10.227 19.102 hybrid contribution 2.035 0.300 0.337 2.085 sum 0.847 16.390 10.564 19.518 Atomic orbital electron populations 1.21693 0.98900 0.98162 1.00566 1.21461 0.92176 0.98979 1.01566 1.19255 0.92576 0.91312 0.86237 0.94566 1.21900 0.92678 1.37744 1.05837 0.92970 1.24902 0.97798 0.95031 0.95648 1.69893 1.34703 1.38032 1.09599 0.86627 0.86357 0.77685 0.77821 1.20060 1.21042 1.21044 1.60977 1.53853 1.04554 1.10253 1.20199 0.98662 0.89822 0.87005 0.90953 1.21731 0.95779 0.99761 1.01343 1.23455 0.80766 0.84234 0.95350 1.70345 1.30441 1.33384 0.98227 1.20264 0.88555 0.82753 0.89773 1.69609 1.21665 1.23825 1.26348 1.43440 1.46029 1.27694 1.12736 0.74686 1.19119 0.82690 0.84992 0.82806 1.45889 1.50710 1.23791 1.10242 1.21844 0.97299 0.99823 0.85476 1.21936 1.03211 0.98353 0.82913 1.68594 1.32977 1.15918 1.20047 0.93113 0.94526 0.95865 0.95124 0.89270 0.92990 0.85254 0.93674 0.91099 0.92068 0.82204 0.92020 0.90665 0.88364 0.90965 0.90145 0.90736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 9.73 37.15 0.36 -2.50 16 2 C -0.10 -2.50 5.44 -26.73 -0.15 -2.65 16 3 C 0.21 5.24 1.76 -68.86 -0.12 5.12 16 4 H 0.04 0.96 6.83 -51.93 -0.35 0.61 16 5 C -0.54 -14.54 8.43 -34.44 -0.29 -14.83 16 6 H 0.05 1.42 7.68 -52.48 -0.40 1.02 16 7 C 0.07 1.86 5.30 -17.82 -0.09 1.77 16 8 N -0.88 -24.71 11.30 55.43 0.63 -24.08 16 9 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 N -0.67 -14.42 5.37 -102.17 -0.55 -14.97 16 14 C 0.16 3.03 2.85 -68.86 -0.20 2.84 16 15 H 0.07 1.53 7.79 -51.93 -0.40 1.12 16 16 C -0.13 -2.25 9.37 37.16 0.35 -1.90 16 17 C 0.44 8.04 6.31 -156.65 -0.99 7.05 16 18 N -0.59 -11.06 10.21 -11.47 -0.12 -11.17 16 19 C 0.56 9.46 8.78 -321.78 -2.82 6.63 16 20 N -0.77 -13.16 14.19 29.90 0.42 -12.74 16 21 N -0.66 -8.60 5.37 -14.36 -0.08 -8.68 16 22 H 0.41 4.10 6.45 -40.82 -0.26 3.84 16 23 C 0.66 8.58 8.22 -320.25 -2.63 5.95 16 24 N -0.59 -5.08 3.32 -191.33 -0.64 -5.72 16 25 C 0.10 0.71 10.53 59.85 0.63 1.34 16 26 C 0.08 0.35 10.64 59.84 0.64 0.99 16 27 N -0.63 -10.15 9.02 -11.21 -0.10 -10.25 16 28 H 0.05 1.05 7.86 -51.93 -0.41 0.64 16 29 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.09 2.39 5.98 -51.93 -0.31 2.08 16 33 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 34 H 0.33 7.56 8.00 -39.29 -0.31 7.24 16 35 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 1.30 7.14 -51.93 -0.37 0.93 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 38 H 0.36 6.17 8.91 -40.82 -0.36 5.80 16 39 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.07 0.35 8.07 -51.93 -0.42 -0.07 16 41 H 0.10 0.96 7.27 -51.93 -0.38 0.59 16 42 H 0.07 0.30 5.65 -51.93 -0.29 0.01 16 43 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 44 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 LS Contribution 358.09 15.07 5.40 5.40 Total: -1.00 -31.34 358.09 -12.17 -43.51 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: -6.80 Total: 12.83 kcal Atomic # 6 Polarization: 15.14 SS G_CDS: -5.32 Total: 9.82 kcal Atomic # 7 Polarization: -87.19 SS G_CDS: -0.43 Total: -87.61 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.34 -12.17 -43.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594010914.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.049 kcal (2) G-P(sol) polarization free energy of solvation -31.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds