Wall clock time and date at job start Tue Mar 31 2020 03:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47181 * 2 1 4 4 H 1.09003 * 109.47309 * 303.86073 * 3 2 1 5 5 C 1.50693 * 109.47324 * 183.85789 * 3 2 1 6 6 H 1.08008 * 120.00263 * 239.99996 * 5 3 2 7 7 C 1.37877 * 120.00579 * 59.99970 * 5 3 2 8 8 N 1.31518 * 119.99285 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 120.00537 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47200 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.47058 * 119.99983 * 9 7 5 12 12 H 1.48498 * 109.47317 * 239.99992 * 9 7 5 13 13 N 1.46905 * 109.47012 * 63.85505 * 3 2 1 14 14 C 1.46898 * 110.99774 * 208.70877 * 13 3 2 15 15 H 1.08993 * 109.47650 * 321.16885 * 14 13 3 16 16 C 1.53003 * 109.47039 * 81.17248 * 14 13 3 17 17 C 1.50708 * 109.47103 * 201.16913 * 14 13 3 18 18 N 1.31423 * 119.32725 * 314.72887 * 17 14 13 19 19 C 1.34684 * 120.30093 * 179.76930 * 18 17 14 20 20 N 1.31257 * 120.48686 * 180.25254 * 19 18 17 21 21 N 1.38211 * 119.03642 * 0.49759 * 19 18 17 22 22 H 0.96995 * 120.63323 * 179.78146 * 21 19 18 23 23 C 1.36523 * 118.74012 * 359.75482 * 21 19 18 24 24 N 1.36535 * 120.18734 * 179.97438 * 23 21 19 25 25 C 1.46504 * 119.99614 * 186.04985 * 24 23 21 26 26 C 1.46493 * 120.00184 * 6.04831 * 24 23 21 27 27 N 1.32353 * 119.61877 * 0.02562 * 23 21 19 28 28 H 1.09004 * 109.47354 * 294.98741 * 1 2 3 29 29 H 1.09004 * 109.47264 * 54.98992 * 1 2 3 30 30 H 1.09004 * 109.47065 * 174.98991 * 1 2 3 31 31 H 1.09001 * 109.47234 * 119.99691 * 2 1 3 32 32 H 1.08994 * 109.47329 * 240.00085 * 2 1 3 33 33 H 0.97007 * 119.99781 * 180.02562 * 8 7 5 34 34 H 1.00900 * 110.99827 * 84.75558 * 13 3 2 35 35 H 1.08998 * 109.46993 * 184.88379 * 16 14 13 36 36 H 1.08999 * 109.46910 * 304.87908 * 16 14 13 37 37 H 1.08994 * 109.47109 * 64.88487 * 16 14 13 38 38 H 0.97005 * 120.00112 * 0.25113 * 20 19 18 39 39 H 1.09001 * 109.47409 * 90.00073 * 25 24 23 40 40 H 1.09004 * 109.46829 * 209.99865 * 25 24 23 41 41 H 1.08995 * 109.47002 * 329.99697 * 25 24 23 42 42 H 1.08995 * 109.47582 * 5.42882 * 26 24 23 43 43 H 1.09001 * 109.47424 * 125.43025 * 26 24 23 44 44 H 1.09001 * 109.47375 * 245.42443 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6213 1.9760 -0.8534 5 6 3.5439 1.4436 -0.0956 6 1 4.1346 1.8934 0.6888 7 6 4.1660 0.8705 -1.1844 8 7 3.4467 0.3232 -2.1398 9 14 6.0302 0.8712 -1.3025 10 1 6.6016 1.5433 -0.1080 11 1 6.5228 -0.5283 -1.3655 12 1 6.4483 1.5987 -2.5277 13 7 1.6278 2.1076 1.2433 14 6 1.4671 3.5534 1.0386 15 1 2.2528 3.9161 0.3759 16 6 0.1005 3.8305 0.4090 17 6 1.5621 4.2622 2.3652 18 7 0.9096 3.7817 3.3999 19 6 0.9843 4.3968 4.5958 20 7 0.3381 3.9173 5.6328 21 7 1.7472 5.5431 4.7140 22 1 1.8147 6.0065 5.5635 23 6 2.4046 6.0107 3.6126 24 7 3.1661 7.1409 3.6959 25 6 3.7615 7.7137 2.4860 26 6 3.3878 7.7807 4.9949 27 7 2.2985 5.3627 2.4634 28 1 -0.3634 0.4341 0.9315 29 1 -0.3634 0.5896 -0.8417 30 1 -0.3633 -1.0238 -0.0898 31 1 1.8933 -0.5138 0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 3.8844 -0.0804 -2.9057 34 1 2.2813 1.9183 1.9884 35 1 0.0158 4.8923 0.1774 36 1 -0.0019 3.2495 -0.5075 37 1 -0.6859 3.5474 1.1086 38 1 -0.1954 3.1122 5.5420 39 1 3.0698 8.4317 2.0455 40 1 4.6933 8.2175 2.7432 41 1 3.9646 6.9180 1.7693 42 1 2.9527 7.1651 5.7822 43 1 4.4584 7.8893 5.1685 44 1 2.9173 8.7640 5.0007 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594010914.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:43:28 Heat of formation + Delta-G solvation = 78.912669 kcal Electronic energy + Delta-G solvation = -24451.314821 eV Core-core repulsion = 21053.428883 eV Total energy + Delta-G solvation = -3397.885938 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.186 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.53651 -39.10084 -38.17681 -36.52818 -34.85232 -34.24979 -33.12171 -31.77072 -30.53203 -29.11419 -27.86699 -27.69161 -25.72182 -24.40472 -23.10908 -21.73236 -21.20450 -20.11088 -19.60165 -18.75062 -18.15516 -17.24253 -16.78686 -16.66425 -16.32421 -15.68862 -15.57013 -15.53525 -15.12871 -14.54852 -13.92331 -13.81276 -13.48324 -13.44466 -13.21374 -13.17758 -13.06819 -12.93927 -12.88108 -12.71408 -12.51425 -12.39106 -12.31891 -12.11591 -11.96793 -11.44079 -11.35283 -10.94885 -10.72709 -10.40937 -10.40301 -9.90138 -9.02007 -8.98180 -8.01335 -6.22351 -0.21506 0.88756 0.89656 1.38807 1.41665 1.51344 1.87451 2.43319 2.77161 2.91081 3.18608 3.20868 3.76790 3.95184 4.20133 4.34357 4.38287 4.44262 4.51790 4.67217 4.69235 4.71033 4.75377 4.79304 4.83430 4.91574 5.03109 5.05087 5.08445 5.23845 5.35858 5.39366 5.49144 5.50934 5.58541 5.70363 5.82566 6.11320 6.14507 6.22862 6.27895 6.43222 6.77843 7.01765 7.12370 7.48092 7.48775 8.95581 Molecular weight = 294.19amu Principal moments of inertia in cm(-1) A = 0.014333 B = 0.004864 C = 0.004023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.029290 B = 5755.296913 C = 6959.075734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.099 4.099 3 C 0.224 3.776 4 H 0.014 0.986 5 C -0.556 4.556 6 H 0.042 0.958 7 C 0.025 3.975 8 N -0.907 5.907 9 Si 0.948 3.052 10 H -0.275 1.275 11 H -0.281 1.281 12 H -0.278 1.278 13 N -0.656 5.656 14 C 0.157 3.843 15 H 0.052 0.948 16 C -0.116 4.116 17 C 0.438 3.562 18 N -0.621 5.621 19 C 0.552 3.448 20 N -0.779 5.779 21 N -0.648 5.648 22 H 0.428 0.572 23 C 0.660 3.340 24 N -0.572 5.572 25 C 0.092 3.908 26 C 0.068 3.932 27 N -0.652 5.652 28 H 0.053 0.947 29 H 0.035 0.965 30 H 0.041 0.959 31 H 0.021 0.979 32 H 0.063 0.937 33 H 0.262 0.738 34 H 0.322 0.678 35 H 0.065 0.935 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.354 0.646 39 H 0.074 0.926 40 H 0.110 0.890 41 H 0.070 0.930 42 H 0.075 0.925 43 H 0.104 0.896 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.645 18.647 11.282 21.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.138 4.138 3 C 0.115 3.885 4 H 0.032 0.968 5 C -0.595 4.595 6 H 0.060 0.940 7 C -0.176 4.176 8 N -0.546 5.546 9 Si 0.774 3.226 10 H -0.200 1.200 11 H -0.207 1.207 12 H -0.203 1.203 13 N -0.286 5.286 14 C 0.045 3.955 15 H 0.070 0.930 16 C -0.175 4.175 17 C 0.159 3.841 18 N -0.358 5.358 19 C 0.180 3.820 20 N -0.422 5.422 21 N -0.288 5.288 22 H 0.272 0.728 23 C 0.300 3.700 24 N -0.286 5.286 25 C -0.050 4.050 26 C -0.073 4.073 27 N -0.397 5.397 28 H 0.072 0.928 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.040 0.960 32 H 0.082 0.918 33 H 0.071 0.929 34 H 0.138 0.862 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.172 0.828 39 H 0.092 0.908 40 H 0.129 0.871 41 H 0.088 0.912 42 H 0.093 0.907 43 H 0.122 0.878 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -0.205 18.361 11.440 21.634 hybrid contribution 1.819 -0.210 0.012 1.831 sum 1.614 18.151 11.452 21.523 Atomic orbital electron populations 1.21535 0.96365 0.99382 1.00674 1.21332 0.94400 0.98313 0.99744 1.19022 0.91402 0.91495 0.86579 0.96797 1.22119 0.93934 1.37748 1.05727 0.93963 1.25579 1.01847 0.94750 0.95377 1.70004 1.36227 1.38437 1.09954 0.85678 0.81451 0.77657 0.77822 1.19982 1.20736 1.20324 1.60914 1.52892 1.06203 1.08597 1.20110 0.98898 0.88448 0.88062 0.93039 1.21615 0.94547 1.00879 1.00432 1.23052 0.81449 0.85045 0.94524 1.70243 1.31781 1.34784 0.99005 1.20331 0.88793 0.83625 0.89240 1.69669 1.22281 1.23937 1.26266 1.43187 1.45293 1.26738 1.13569 0.72816 1.19321 0.82934 0.85822 0.81942 1.46372 1.48069 1.21729 1.12435 1.22029 0.99173 0.99099 0.84667 1.22347 1.05166 0.99137 0.80618 1.68524 1.33496 1.15870 1.21826 0.92797 0.94542 0.94030 0.96012 0.91832 0.92855 0.86185 0.91615 0.92211 0.92316 0.82802 0.90754 0.87121 0.91160 0.90673 0.87799 0.88098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.14 9.73 71.98 0.70 -4.44 16 2 C -0.10 -4.91 5.44 30.59 0.17 -4.75 16 3 C 0.22 11.30 1.76 44.17 0.08 11.38 16 4 H 0.01 0.77 6.83 -2.39 -0.02 0.76 16 5 C -0.56 -30.55 8.43 25.60 0.22 -30.34 16 6 H 0.04 2.35 7.68 -2.91 -0.02 2.33 16 7 C 0.02 1.36 5.30 84.65 0.45 1.81 16 8 N -0.91 -51.55 11.30 21.45 0.24 -51.31 16 9 Si 0.95 43.60 29.54 68.60 2.03 45.63 16 10 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 11 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 12 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 13 N -0.66 -29.32 5.37 -477.15 -2.56 -31.89 16 14 C 0.16 6.30 2.85 44.17 0.13 6.42 16 15 H 0.05 2.27 7.79 -2.39 -0.02 2.25 16 16 C -0.12 -4.15 9.37 71.98 0.67 -3.47 16 17 C 0.44 16.19 6.31 138.56 0.87 17.07 16 18 N -0.62 -23.49 10.21 -190.19 -1.94 -25.43 16 19 C 0.55 18.46 8.78 261.13 2.29 20.76 16 20 N -0.78 -26.24 14.19 -59.30 -0.84 -27.08 16 21 N -0.65 -15.92 5.37 -199.34 -1.07 -16.99 16 22 H 0.43 7.56 6.45 -92.71 -0.60 6.96 16 23 C 0.66 16.06 8.22 260.59 2.14 18.20 16 24 N -0.57 -8.22 3.32 -759.25 -2.52 -10.75 16 25 C 0.09 1.09 10.53 127.77 1.35 2.43 16 26 C 0.07 0.33 10.64 127.77 1.36 1.69 16 27 N -0.65 -20.79 9.02 -189.39 -1.71 -22.50 16 28 H 0.05 2.22 7.86 -2.39 -0.02 2.20 16 29 H 0.04 1.51 8.14 -2.38 -0.02 1.49 16 30 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 31 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.06 3.49 5.98 -2.39 -0.01 3.48 16 33 H 0.26 14.15 8.31 -92.70 -0.77 13.38 16 34 H 0.32 15.24 8.00 -89.69 -0.72 14.52 16 35 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.06 2.24 7.14 -2.39 -0.02 2.22 16 37 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.35 12.22 8.91 -92.70 -0.83 11.40 16 39 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.11 0.57 8.07 -2.38 -0.02 0.55 16 41 H 0.07 1.30 7.27 -2.39 -0.02 1.29 16 42 H 0.07 0.36 5.65 -2.39 -0.01 0.35 16 43 H 0.10 0.14 8.14 -2.39 -0.02 0.12 16 44 H 0.10 0.09 8.14 -2.39 -0.02 0.07 16 Total: -1.00 -69.27 358.09 0.94 -68.33 By element: Atomic # 1 Polarization: 36.33 SS G_CDS: -1.10 Total: 35.23 kcal Atomic # 6 Polarization: 26.33 SS G_CDS: 10.42 Total: 36.76 kcal Atomic # 7 Polarization: -175.54 SS G_CDS: -10.41 Total: -185.94 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -69.27 0.94 -68.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594010914.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.239 kcal (2) G-P(sol) polarization free energy of solvation -69.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds