Wall clock time and date at job start Tue Mar 31 2020 03:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.46893 * 2 1 4 4 H 1.08998 * 109.46651 * 175.07058 * 3 2 1 5 5 C 1.50695 * 109.47068 * 55.06741 * 3 2 1 6 6 H 1.08005 * 120.00100 * 245.72737 * 5 3 2 7 7 C 1.37878 * 120.00196 * 65.72685 * 5 3 2 8 8 N 1.31517 * 119.99851 * 5.51958 * 7 5 3 9 9 Si 1.86801 * 120.00069 * 185.51626 * 7 5 3 10 10 H 1.48500 * 109.46775 * 180.02562 * 9 7 5 11 11 H 1.48497 * 109.47041 * 300.00063 * 9 7 5 12 12 H 1.48498 * 109.46967 * 60.00609 * 9 7 5 13 13 N 1.46900 * 109.46824 * 295.06622 * 3 2 1 14 14 C 1.46900 * 111.00069 * 279.77583 * 13 3 2 15 15 H 1.08997 * 109.47002 * 39.77288 * 14 13 3 16 16 C 1.52997 * 109.47380 * 279.77423 * 14 13 3 17 17 C 1.50699 * 109.47077 * 159.77461 * 14 13 3 18 18 N 1.31429 * 119.32999 * 44.72546 * 17 14 13 19 19 C 1.34692 * 120.29537 * 179.77187 * 18 17 14 20 20 N 1.31259 * 120.47481 * 180.23379 * 19 18 17 21 21 N 1.38200 * 119.04057 * 0.49743 * 19 18 17 22 22 H 0.96998 * 120.62805 * 179.77507 * 21 19 18 23 23 C 1.36524 * 118.74526 * 359.75840 * 21 19 18 24 24 N 1.36530 * 120.19375 * 179.97438 * 23 21 19 25 25 C 1.46495 * 120.00328 * 180.02562 * 24 23 21 26 26 C 1.46502 * 119.99902 * 0.02562 * 24 23 21 27 27 N 1.32354 * 119.61409 * 359.97438 * 23 21 19 28 28 H 1.09000 * 109.47192 * 305.00968 * 1 2 3 29 29 H 1.09002 * 109.47116 * 65.00874 * 1 2 3 30 30 H 1.09000 * 109.47383 * 185.00789 * 1 2 3 31 31 H 1.08999 * 109.46971 * 240.00236 * 2 1 3 32 32 H 1.08995 * 109.46957 * 119.99980 * 2 1 3 33 33 H 0.97006 * 119.99970 * 355.15505 * 8 7 5 34 34 H 1.00900 * 111.00100 * 43.73137 * 13 3 2 35 35 H 1.09005 * 109.46672 * 299.99880 * 16 14 13 36 36 H 1.08996 * 109.47308 * 59.99571 * 16 14 13 37 37 H 1.08997 * 109.47642 * 180.02562 * 16 14 13 38 38 H 0.96998 * 120.00411 * 0.26991 * 20 19 18 39 39 H 1.09000 * 109.47456 * 89.99175 * 25 24 23 40 40 H 1.09001 * 109.47495 * 209.99747 * 25 24 23 41 41 H 1.08999 * 109.47056 * 329.99863 * 25 24 23 42 42 H 1.08996 * 109.47413 * 90.00130 * 26 24 23 43 43 H 1.09002 * 109.47224 * 210.00331 * 26 24 23 44 44 H 1.09007 * 109.47056 * 330.00486 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1264 1.4438 0.0883 5 6 1.4403 2.1873 1.1648 6 1 0.7564 3.0045 0.9889 7 6 1.7648 1.8255 2.4551 8 7 2.6786 0.9044 2.6697 9 14 0.9065 2.6438 3.8984 10 1 1.4314 2.0827 5.1692 11 1 1.1609 4.1063 3.8612 12 1 -0.5546 2.3930 3.8123 13 7 1.6499 2.0998 -1.2546 14 6 2.5602 1.7312 -2.3471 15 1 2.8126 0.6738 -2.2685 16 6 3.8370 2.5688 -2.2516 17 6 1.8874 1.9901 -3.6704 18 7 1.2341 3.1161 -3.8511 19 6 0.6294 3.3696 -5.0277 20 7 -0.0201 4.4950 -5.2135 21 7 0.6981 2.4253 -6.0344 22 1 0.2684 2.5826 -6.8897 23 6 1.3827 1.2671 -5.8026 24 7 1.4689 0.3138 -6.7762 25 6 2.2041 -0.9277 -6.5228 26 6 0.8263 0.5325 -8.0745 27 7 1.9623 1.0737 -4.6285 28 1 -0.3633 0.5896 0.8417 29 1 -0.3633 0.4342 -0.9315 30 1 -0.3634 -1.0237 0.0897 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 3.0738 0.4296 1.9217 34 1 0.6933 1.8851 -1.4930 35 1 3.5844 3.6263 -2.3302 36 1 4.3236 2.3816 -1.2945 37 1 4.5122 2.2957 -3.0625 38 1 -0.0639 5.1529 -4.5022 39 1 1.5260 -1.6733 -6.1075 40 1 2.6237 -1.2989 -7.4578 41 1 3.0096 -0.7348 -5.8143 42 1 1.5273 1.0243 -8.7487 43 1 0.5269 -0.4263 -8.4978 44 1 -0.0537 1.1623 -7.9428 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594010916.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:43:31 Heat of formation + Delta-G solvation = 76.235945 kcal Electronic energy + Delta-G solvation = -24504.047828 eV Core-core repulsion = 21106.045819 eV Total energy + Delta-G solvation = -3398.002009 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.186 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.58639 -39.36873 -38.43947 -36.74628 -35.00542 -34.34666 -32.94724 -31.81353 -30.26685 -29.12465 -27.79982 -27.51960 -25.85146 -25.15529 -23.15695 -22.25305 -20.93306 -20.14496 -19.67053 -18.87325 -18.25510 -17.29744 -16.93014 -16.67027 -16.02177 -15.71830 -15.67155 -15.53255 -15.15316 -14.81928 -14.47231 -13.89993 -13.72618 -13.54645 -13.45444 -13.23215 -13.09805 -12.93260 -12.81236 -12.63804 -12.53863 -12.38746 -12.24973 -12.01993 -11.90970 -11.80172 -11.62446 -10.82530 -10.59809 -10.46207 -10.28625 -9.94436 -9.04499 -9.00101 -8.44016 -6.13094 -0.26781 0.83216 0.85951 1.58555 1.65196 1.82590 1.84510 2.62499 2.71973 2.82208 3.12520 3.31941 3.63825 3.94581 4.15943 4.19302 4.27156 4.34543 4.35918 4.40221 4.43274 4.55215 4.60382 4.68936 4.69447 4.75120 4.78709 4.87926 4.99223 5.00837 5.18001 5.23150 5.26844 5.36111 5.42375 5.47137 5.54994 6.01060 6.09477 6.22235 6.28051 6.60068 6.68712 6.87412 7.05875 7.42399 7.60940 8.93195 Molecular weight = 294.19amu Principal moments of inertia in cm(-1) A = 0.022080 B = 0.003962 C = 0.003704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.814004 B = 7064.653232 C = 7557.782801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.145 4.145 3 C 0.209 3.791 4 H 0.008 0.992 5 C -0.572 4.572 6 H 0.039 0.961 7 C -0.025 4.025 8 N -0.940 5.940 9 Si 1.107 2.893 10 H -0.286 1.286 11 H -0.280 1.280 12 H -0.274 1.274 13 N -0.659 5.659 14 C 0.151 3.849 15 H 0.061 0.939 16 C -0.119 4.119 17 C 0.436 3.564 18 N -0.625 5.625 19 C 0.552 3.448 20 N -0.777 5.777 21 N -0.646 5.646 22 H 0.430 0.570 23 C 0.660 3.340 24 N -0.569 5.569 25 C 0.092 3.908 26 C 0.064 3.936 27 N -0.650 5.650 28 H 0.048 0.952 29 H 0.039 0.961 30 H 0.050 0.950 31 H 0.041 0.959 32 H 0.044 0.956 33 H 0.261 0.739 34 H 0.328 0.672 35 H 0.052 0.948 36 H 0.054 0.946 37 H 0.071 0.929 38 H 0.354 0.646 39 H 0.068 0.932 40 H 0.114 0.886 41 H 0.074 0.926 42 H 0.087 0.913 43 H 0.121 0.879 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.844 -6.538 -25.088 25.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.185 4.185 3 C 0.100 3.900 4 H 0.026 0.974 5 C -0.611 4.611 6 H 0.057 0.943 7 C -0.223 4.223 8 N -0.579 5.579 9 Si 0.931 3.069 10 H -0.211 1.211 11 H -0.206 1.206 12 H -0.200 1.200 13 N -0.290 5.290 14 C 0.039 3.961 15 H 0.079 0.921 16 C -0.178 4.178 17 C 0.157 3.843 18 N -0.362 5.362 19 C 0.180 3.820 20 N -0.419 5.419 21 N -0.285 5.285 22 H 0.272 0.728 23 C 0.300 3.700 24 N -0.283 5.283 25 C -0.049 4.049 26 C -0.077 4.077 27 N -0.395 5.395 28 H 0.067 0.933 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.147 0.853 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.090 0.910 38 H 0.171 0.829 39 H 0.087 0.913 40 H 0.132 0.868 41 H 0.093 0.907 42 H 0.106 0.894 43 H 0.140 0.860 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.804 -5.516 -23.496 24.203 hybrid contribution -0.354 -0.554 -1.674 1.798 sum -2.158 -6.070 -25.170 25.982 Atomic orbital electron populations 1.21466 0.95652 1.00091 1.00659 1.22121 0.97082 1.00122 0.99147 1.19190 0.94228 0.89166 0.87368 0.97390 1.22012 1.29252 1.17581 0.92277 0.94253 1.26838 0.95813 0.97146 1.02507 1.70907 1.25944 1.25801 1.35259 0.83040 0.75470 0.75301 0.73126 1.21144 1.20571 1.20001 1.60701 1.04705 1.62090 1.01536 1.20206 0.93451 0.98337 0.84095 0.92137 1.21620 0.94745 0.99773 1.01630 1.22913 0.84582 0.83569 0.93211 1.70274 1.21301 1.24219 1.20369 1.20294 0.90578 0.89629 0.81499 1.69660 1.29218 1.04068 1.38978 1.43079 1.51152 1.15702 1.18568 0.72779 1.19331 0.81936 0.80465 0.88277 1.46405 1.53896 1.16344 1.11635 1.22059 0.96560 0.81911 1.04393 1.22385 0.98084 1.06138 0.81056 1.68491 1.35261 1.35165 1.00589 0.93325 0.94208 0.93052 0.94007 0.93752 0.92842 0.85345 0.92883 0.92704 0.90998 0.82855 0.91334 0.86760 0.90749 0.89420 0.86040 0.90748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.13 9.38 71.98 0.68 -4.46 16 2 C -0.14 -6.65 5.44 30.60 0.17 -6.49 16 3 C 0.21 10.54 1.81 44.17 0.08 10.62 16 4 H 0.01 0.45 6.30 -2.39 -0.02 0.44 16 5 C -0.57 -32.33 7.18 25.60 0.18 -32.15 16 6 H 0.04 2.31 7.82 -2.91 -0.02 2.29 16 7 C -0.02 -1.42 5.29 84.65 0.45 -0.97 16 8 N -0.94 -56.41 13.21 21.45 0.28 -56.12 16 9 Si 1.11 51.70 29.91 68.60 2.05 53.75 16 10 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 11 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 12 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 13 N -0.66 -29.72 5.82 -477.16 -2.78 -32.50 16 14 C 0.15 5.79 2.87 44.17 0.13 5.92 16 15 H 0.06 2.31 6.74 -2.39 -0.02 2.30 16 16 C -0.12 -4.35 9.33 71.98 0.67 -3.68 16 17 C 0.44 15.39 6.33 138.56 0.88 16.27 16 18 N -0.62 -23.56 10.21 -190.19 -1.94 -25.51 16 19 C 0.55 18.18 8.78 261.13 2.29 20.47 16 20 N -0.78 -26.25 14.19 -59.30 -0.84 -27.10 16 21 N -0.65 -14.95 5.35 -199.35 -1.07 -16.01 16 22 H 0.43 7.03 6.73 -92.71 -0.62 6.40 16 23 C 0.66 14.54 8.23 260.59 2.15 16.69 16 24 N -0.57 -6.75 3.32 -759.24 -2.52 -9.27 16 25 C 0.09 0.81 10.44 127.77 1.33 2.15 16 26 C 0.06 0.18 10.25 127.77 1.31 1.49 16 27 N -0.65 -18.79 9.06 -189.39 -1.72 -20.50 16 28 H 0.05 2.29 6.88 -2.39 -0.02 2.27 16 29 H 0.04 1.57 6.68 -2.39 -0.02 1.56 16 30 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.04 1.73 6.97 -2.39 -0.02 1.71 16 32 H 0.04 2.24 6.18 -2.39 -0.01 2.23 16 33 H 0.26 15.61 5.62 -92.70 -0.52 15.09 16 34 H 0.33 14.95 6.42 -89.69 -0.58 14.38 16 35 H 0.05 2.07 8.14 -2.38 -0.02 2.05 16 36 H 0.05 2.15 7.04 -2.39 -0.02 2.13 16 37 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 38 H 0.35 12.49 8.91 -92.71 -0.83 11.66 16 39 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.11 0.18 8.07 -2.39 -0.02 0.17 16 41 H 0.07 1.03 7.35 -2.39 -0.02 1.01 16 42 H 0.09 0.04 8.14 -2.39 -0.02 0.02 16 43 H 0.12 -0.27 8.07 -2.39 -0.02 -0.29 16 44 H 0.07 0.22 6.42 -2.38 -0.02 0.20 16 Total: -1.00 -74.01 350.63 1.05 -72.97 By element: Atomic # 1 Polarization: 35.16 SS G_CDS: -0.73 Total: 34.43 kcal Atomic # 6 Polarization: 15.55 SS G_CDS: 10.31 Total: 25.86 kcal Atomic # 7 Polarization: -176.43 SS G_CDS: -10.58 Total: -187.01 kcal Atomic # 14 Polarization: 51.70 SS G_CDS: 2.05 Total: 53.75 kcal Total: -74.01 1.05 -72.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594010916.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.202 kcal (2) G-P(sol) polarization free energy of solvation -74.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds