Wall clock time and date at job start Tue Mar 31 2020 03:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42904 * 113.99738 * 2 1 4 4 C 1.53002 * 109.46895 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.46957 * 179.97438 * 4 3 2 6 6 H 1.09001 * 109.47596 * 305.00496 * 5 4 3 7 7 N 1.46903 * 109.47002 * 65.00421 * 5 4 3 8 8 C 1.53003 * 109.47142 * 184.99986 * 5 4 3 9 9 C 1.50698 * 109.47153 * 175.00144 * 8 5 4 10 10 C 1.35356 * 126.74948 * 124.71173 * 9 8 5 11 11 N 1.35313 * 106.17368 * 179.85092 * 10 9 8 12 12 C 1.46506 * 125.86624 * 180.11521 * 11 10 9 13 13 C 1.53007 * 109.46613 * 123.61164 * 12 11 10 14 14 C 1.50704 * 115.54696 * 279.10557 * 13 12 11 15 15 H 1.08008 * 119.99510 * 144.79560 * 14 13 12 16 16 C 1.37873 * 120.00454 * 324.79913 * 14 13 12 17 17 N 1.31522 * 119.99737 * 340.93767 * 16 14 13 18 18 Si 1.86792 * 120.00161 * 160.93937 * 16 14 13 19 19 H 1.48492 * 109.47370 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47221 * 120.00118 * 18 16 14 21 21 H 1.48504 * 109.47181 * 240.00042 * 18 16 14 22 22 C 1.52993 * 117.49606 * 133.40383 * 13 12 11 23 23 C 1.52993 * 117.49964 * 64.77929 * 13 12 11 24 24 N 1.28710 * 108.26400 * 0.42508 * 11 10 9 25 25 N 1.28636 * 110.17927 * 359.72582 * 24 11 10 26 26 H 1.08997 * 109.46902 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47266 * 300.00182 * 1 2 3 28 28 H 1.09003 * 109.47076 * 60.00166 * 1 2 3 29 29 H 1.08994 * 109.47119 * 59.99767 * 3 2 1 30 30 H 1.08994 * 109.46923 * 299.99686 * 3 2 1 31 31 H 1.08994 * 109.47582 * 300.00354 * 4 3 2 32 32 H 1.09004 * 109.47032 * 59.99942 * 4 3 2 33 33 H 1.00900 * 110.99987 * 296.04798 * 7 5 4 34 34 H 1.00909 * 110.99933 * 59.99900 * 7 5 4 35 35 H 1.09000 * 109.47233 * 295.00324 * 8 5 4 36 36 H 1.08999 * 109.46820 * 55.00359 * 8 5 4 37 37 H 1.07996 * 126.91294 * 0.02562 * 10 9 8 38 38 H 1.08999 * 109.47501 * 243.60858 * 12 11 10 39 39 H 1.08991 * 109.47128 * 3.61380 * 12 11 10 40 40 H 0.97001 * 119.99840 * 185.01518 * 17 16 14 41 41 H 1.08999 * 117.50176 * 359.97438 * 22 13 12 42 42 H 1.08999 * 117.49988 * 145.02158 * 22 13 12 43 43 H 1.09003 * 117.50025 * 214.97979 * 23 13 12 44 44 H 1.08999 * 117.50023 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1577 2.5824 0.0000 6 1 3.7673 3.1537 -0.8422 7 7 3.8217 3.2686 1.2547 8 6 5.6780 2.4638 -0.1251 9 6 6.2806 3.8395 -0.2492 10 6 7.2447 4.3751 0.5356 11 7 7.4730 5.6196 0.0558 12 6 8.4418 6.5807 0.5888 13 6 9.4043 7.0041 -0.5227 14 6 10.5320 6.0454 -0.8061 15 1 10.8882 5.9145 -1.8173 16 6 11.1088 5.3352 0.2253 17 7 10.9599 5.7415 1.4673 18 14 12.1019 3.7962 -0.1412 19 1 12.1180 3.5547 -1.6063 20 1 13.4929 3.9769 0.3464 21 1 11.4840 2.6332 0.5450 22 6 9.6917 8.4989 -0.6767 23 6 8.8200 7.7774 -1.7065 24 7 6.6881 5.8163 -0.9452 25 7 5.9640 4.7735 -1.1529 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.6885 1.8464 0.8899 30 1 1.6886 1.8463 -0.8900 31 1 3.8568 0.6440 0.8907 32 1 3.8574 0.6436 -0.8891 33 1 2.8265 3.4167 1.3306 34 1 4.1731 2.7583 2.0512 35 1 6.0780 1.9705 0.7607 36 1 5.9250 1.8777 -1.0102 37 1 7.7352 3.9031 1.3739 38 1 7.9146 7.4568 0.9661 39 1 9.0042 6.1179 1.3996 40 1 11.4248 5.2851 2.1859 41 1 9.1948 9.1807 0.0134 42 1 10.6966 8.7892 -0.9831 43 1 9.2515 7.5930 -2.6904 44 1 7.7499 7.9841 -1.6938 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600970919.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:42:44 Heat of formation + Delta-G solvation = 66.155817 kcal Electronic energy + Delta-G solvation = -23684.320047 eV Core-core repulsion = 20253.588180 eV Total energy + Delta-G solvation = -3430.731867 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.27798 -38.51887 -37.04598 -36.58050 -32.99032 -32.41204 -31.36559 -30.25971 -28.02678 -26.83883 -26.44392 -25.59425 -23.59431 -21.49412 -21.19977 -20.84290 -20.17214 -19.10826 -16.85759 -16.66195 -16.44932 -16.05776 -15.69470 -15.30414 -15.16756 -14.79011 -14.46655 -14.03684 -13.81924 -13.62956 -13.24813 -13.11266 -12.71432 -12.06236 -12.04572 -11.83515 -11.61105 -11.57166 -11.33904 -11.10115 -11.02832 -10.84294 -10.71195 -10.53968 -10.26275 -9.98048 -9.96302 -9.81746 -9.37410 -8.93355 -8.78921 -8.65079 -8.29680 -8.21050 -6.32027 -4.27644 2.63019 3.13591 3.24245 3.30517 3.31265 3.46685 3.52256 4.21615 4.53858 4.72931 4.74113 4.78090 4.94298 5.01164 5.02570 5.14007 5.16461 5.31787 5.42988 5.46317 5.55706 5.59898 5.73401 5.86099 5.89361 5.93586 5.97864 6.09120 6.29388 6.32225 6.40091 6.61314 6.73609 6.84220 6.85582 6.92787 7.05445 7.18636 7.23154 7.31066 7.45414 7.68396 7.73320 8.20243 8.66191 9.29284 9.49109 10.71641 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.021557 B = 0.003363 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.591177 B = 8322.676458 C = 9093.379476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.393 6.393 3 C 0.060 3.940 4 C -0.155 4.155 5 C 0.103 3.897 6 H 0.091 0.909 7 N -0.835 5.835 8 C -0.017 4.017 9 C -0.023 4.023 10 C -0.039 4.039 11 N -0.249 5.249 12 C 0.130 3.870 13 C 0.030 3.970 14 C -0.482 4.482 15 H 0.064 0.936 16 C 0.069 3.931 17 N -0.883 5.883 18 Si 0.891 3.109 19 H -0.271 1.271 20 H -0.282 1.282 21 H -0.279 1.279 22 C -0.192 4.192 23 C -0.189 4.189 24 N -0.087 5.087 25 N -0.290 5.290 26 H 0.085 0.915 27 H 0.040 0.960 28 H 0.041 0.959 29 H 0.045 0.955 30 H 0.052 0.948 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.335 0.665 34 H 0.337 0.663 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.172 0.828 38 H 0.063 0.937 39 H 0.152 0.848 40 H 0.267 0.733 41 H 0.067 0.933 42 H 0.082 0.918 43 H 0.075 0.925 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.706 -8.337 2.453 17.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.312 6.312 3 C -0.016 4.016 4 C -0.195 4.195 5 C -0.009 4.009 6 H 0.109 0.891 7 N -0.365 5.365 8 C -0.056 4.056 9 C -0.163 4.163 10 C -0.191 4.191 11 N -0.041 5.041 12 C 0.011 3.989 13 C 0.029 3.971 14 C -0.519 4.519 15 H 0.083 0.917 16 C -0.133 4.133 17 N -0.521 5.521 18 Si 0.718 3.282 19 H -0.195 1.195 20 H -0.208 1.208 21 H -0.204 1.204 22 C -0.231 4.231 23 C -0.227 4.227 24 N -0.066 5.066 25 N -0.156 5.156 26 H 0.103 0.897 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.089 0.911 32 H 0.096 0.904 33 H 0.148 0.852 34 H 0.150 0.850 35 H 0.092 0.908 36 H 0.097 0.903 37 H 0.190 0.810 38 H 0.082 0.918 39 H 0.169 0.831 40 H 0.077 0.923 41 H 0.086 0.914 42 H 0.100 0.900 43 H 0.094 0.906 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -14.554 -6.942 1.284 16.176 hybrid contribution 0.370 -2.001 1.058 2.294 sum -14.183 -8.943 2.342 16.930 Atomic orbital electron populations 1.22737 0.81134 1.02684 0.99999 1.87883 1.19646 1.28248 1.95420 1.22575 0.94381 0.84544 1.00125 1.22450 0.93213 0.99939 1.03915 1.21378 0.95073 0.90652 0.93835 0.89079 1.58788 1.19248 1.54675 1.03760 1.19730 0.92827 0.90803 1.02287 1.21304 0.99996 0.98011 0.96940 1.23119 1.03363 0.88212 1.04426 1.47467 1.25167 1.12015 1.19479 1.22361 0.86415 0.90533 0.99607 1.19043 0.95228 0.90316 0.92524 1.20597 1.15969 1.21037 0.94248 0.91737 1.24957 0.96092 0.97417 0.94858 1.69675 1.42512 1.40179 0.99765 0.86523 0.79454 0.83149 0.79050 1.19531 1.20831 1.20420 1.23034 0.99568 0.97647 1.02824 1.22878 0.97778 1.07345 0.94653 1.78111 1.03120 1.20100 1.05281 1.74840 1.20421 0.97981 1.22363 0.89692 0.94150 0.94024 0.93643 0.93012 0.91125 0.90355 0.85222 0.84987 0.90801 0.90259 0.81029 0.91839 0.83087 0.92288 0.91448 0.89985 0.90643 0.89915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.39 -4.12 10.70 -35.23 -0.38 -4.50 16 3 C 0.06 0.56 5.71 37.16 0.21 0.77 16 4 C -0.16 -1.51 5.23 -26.73 -0.14 -1.65 16 5 C 0.10 1.19 2.79 -67.71 -0.19 1.00 16 6 H 0.09 1.22 8.13 -51.93 -0.42 0.80 16 7 N -0.84 -9.30 8.90 -4.67 -0.04 -9.34 16 8 C -0.02 -0.23 5.44 -27.88 -0.15 -0.38 16 9 C -0.02 -0.42 6.23 -82.78 -0.52 -0.94 16 10 C -0.04 -0.76 11.49 -17.04 -0.20 -0.95 16 11 N -0.25 -5.44 3.43 -61.26 -0.21 -5.65 16 12 C 0.13 2.92 6.14 -4.03 -0.02 2.89 16 13 C 0.03 0.72 1.93 -155.66 -0.30 0.42 16 14 C -0.48 -12.66 9.00 -34.44 -0.31 -12.97 16 15 H 0.06 1.76 7.89 -52.48 -0.41 1.34 16 16 C 0.07 1.75 5.10 -17.82 -0.09 1.66 16 17 N -0.88 -22.36 10.93 55.43 0.61 -21.76 16 18 Si 0.89 20.10 29.58 -169.99 -5.03 15.07 16 19 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 20 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 21 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 22 C -0.19 -4.22 9.88 -26.73 -0.26 -4.48 16 23 C -0.19 -4.21 9.17 -26.74 -0.25 -4.46 16 24 N -0.09 -1.96 11.59 60.35 0.70 -1.26 16 25 N -0.29 -6.15 12.39 33.29 0.41 -5.74 16 26 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.05 0.37 6.87 -51.93 -0.36 0.01 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.33 3.18 7.55 -39.29 -0.30 2.88 16 34 H 0.34 3.28 9.00 -39.29 -0.35 2.93 16 35 H 0.07 0.87 8.12 -51.93 -0.42 0.45 16 36 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.17 2.99 8.06 -52.49 -0.42 2.57 16 38 H 0.06 1.32 7.94 -51.93 -0.41 0.91 16 39 H 0.15 3.55 5.17 -51.93 -0.27 3.28 16 40 H 0.27 6.41 8.32 -40.82 -0.34 6.07 16 41 H 0.07 1.36 8.08 -51.93 -0.42 0.94 16 42 H 0.08 1.81 8.14 -51.93 -0.42 1.39 16 43 H 0.07 1.69 8.14 -51.93 -0.42 1.27 16 44 H 0.08 1.80 7.47 -51.93 -0.39 1.42 16 LS Contribution 363.84 15.07 5.48 5.48 Total: -1.00 -29.04 363.84 -6.68 -35.71 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: -7.12 Total: 9.73 kcal Atomic # 6 Polarization: -16.65 SS G_CDS: -1.10 Total: -17.75 kcal Atomic # 7 Polarization: -45.21 SS G_CDS: 1.47 Total: -43.75 kcal Atomic # 8 Polarization: -4.12 SS G_CDS: -0.38 Total: -4.50 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.03 Total: 15.07 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -29.04 -6.68 -35.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600970919.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.867 kcal (2) G-P(sol) polarization free energy of solvation -29.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds