Wall clock time and date at job start Tue Mar 31 2020 03:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42904 * 113.99738 * 2 1 4 4 C 1.53002 * 109.46895 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.46957 * 179.97438 * 4 3 2 6 6 H 1.09001 * 109.47596 * 305.00496 * 5 4 3 7 7 N 1.46903 * 109.47002 * 65.00421 * 5 4 3 8 8 C 1.53003 * 109.47142 * 184.99986 * 5 4 3 9 9 C 1.50698 * 109.47153 * 175.00144 * 8 5 4 10 10 C 1.35356 * 126.74948 * 124.71173 * 9 8 5 11 11 N 1.35313 * 106.17368 * 179.85092 * 10 9 8 12 12 C 1.46506 * 125.86624 * 180.11521 * 11 10 9 13 13 C 1.53007 * 109.46613 * 123.61164 * 12 11 10 14 14 C 1.50704 * 115.54696 * 279.10557 * 13 12 11 15 15 H 1.08008 * 119.99510 * 144.79560 * 14 13 12 16 16 C 1.37873 * 120.00454 * 324.79913 * 14 13 12 17 17 N 1.31522 * 119.99737 * 340.93767 * 16 14 13 18 18 Si 1.86792 * 120.00161 * 160.93937 * 16 14 13 19 19 H 1.48492 * 109.47370 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47221 * 120.00118 * 18 16 14 21 21 H 1.48504 * 109.47181 * 240.00042 * 18 16 14 22 22 C 1.52993 * 117.49606 * 133.40383 * 13 12 11 23 23 C 1.52993 * 117.49964 * 64.77929 * 13 12 11 24 24 N 1.28710 * 108.26400 * 0.42508 * 11 10 9 25 25 N 1.28636 * 110.17927 * 359.72582 * 24 11 10 26 26 H 1.08997 * 109.46902 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47266 * 300.00182 * 1 2 3 28 28 H 1.09003 * 109.47076 * 60.00166 * 1 2 3 29 29 H 1.08994 * 109.47119 * 59.99767 * 3 2 1 30 30 H 1.08994 * 109.46923 * 299.99686 * 3 2 1 31 31 H 1.08994 * 109.47582 * 300.00354 * 4 3 2 32 32 H 1.09004 * 109.47032 * 59.99942 * 4 3 2 33 33 H 1.00900 * 110.99987 * 296.04798 * 7 5 4 34 34 H 1.00909 * 110.99933 * 59.99900 * 7 5 4 35 35 H 1.09000 * 109.47233 * 295.00324 * 8 5 4 36 36 H 1.08999 * 109.46820 * 55.00359 * 8 5 4 37 37 H 1.07996 * 126.91294 * 0.02562 * 10 9 8 38 38 H 1.08999 * 109.47501 * 243.60858 * 12 11 10 39 39 H 1.08991 * 109.47128 * 3.61380 * 12 11 10 40 40 H 0.97001 * 119.99840 * 185.01518 * 17 16 14 41 41 H 1.08999 * 117.50176 * 359.97438 * 22 13 12 42 42 H 1.08999 * 117.49988 * 145.02158 * 22 13 12 43 43 H 1.09003 * 117.50025 * 214.97979 * 23 13 12 44 44 H 1.08999 * 117.50023 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1577 2.5824 0.0000 6 1 3.7673 3.1537 -0.8422 7 7 3.8217 3.2686 1.2547 8 6 5.6780 2.4638 -0.1251 9 6 6.2806 3.8395 -0.2492 10 6 7.2447 4.3751 0.5356 11 7 7.4730 5.6196 0.0558 12 6 8.4418 6.5807 0.5888 13 6 9.4043 7.0041 -0.5227 14 6 10.5320 6.0454 -0.8061 15 1 10.8882 5.9145 -1.8173 16 6 11.1088 5.3352 0.2253 17 7 10.9599 5.7415 1.4673 18 14 12.1019 3.7962 -0.1412 19 1 12.1180 3.5547 -1.6063 20 1 13.4929 3.9769 0.3464 21 1 11.4840 2.6332 0.5450 22 6 9.6917 8.4989 -0.6767 23 6 8.8200 7.7774 -1.7065 24 7 6.6881 5.8163 -0.9452 25 7 5.9640 4.7735 -1.1529 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.6885 1.8464 0.8899 30 1 1.6886 1.8463 -0.8900 31 1 3.8568 0.6440 0.8907 32 1 3.8574 0.6436 -0.8891 33 1 2.8265 3.4167 1.3306 34 1 4.1731 2.7583 2.0512 35 1 6.0780 1.9705 0.7607 36 1 5.9250 1.8777 -1.0102 37 1 7.7352 3.9031 1.3739 38 1 7.9146 7.4568 0.9661 39 1 9.0042 6.1179 1.3996 40 1 11.4248 5.2851 2.1859 41 1 9.1948 9.1807 0.0134 42 1 10.6966 8.7892 -0.9831 43 1 9.2515 7.5930 -2.6904 44 1 7.7499 7.9841 -1.6938 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600970919.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:42:44 Heat of formation + Delta-G solvation = 47.324054 kcal Electronic energy + Delta-G solvation = -23685.136654 eV Core-core repulsion = 20253.588180 eV Total energy + Delta-G solvation = -3431.548474 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.86108 -39.28585 -38.72810 -37.56107 -34.56443 -34.34210 -32.71550 -31.06414 -29.25476 -28.41363 -27.52859 -27.19020 -24.53076 -23.12829 -22.85291 -22.13808 -21.46634 -20.77924 -18.47084 -17.70545 -17.39612 -17.16432 -16.94156 -16.70321 -16.66289 -16.04614 -15.70326 -15.41078 -15.06359 -15.01363 -14.71471 -14.11104 -13.85945 -13.51064 -13.47417 -13.04551 -12.94548 -12.87087 -12.69556 -12.42469 -12.33782 -12.29787 -12.10232 -11.95941 -11.85348 -11.67172 -11.39502 -11.21662 -10.74636 -10.64524 -10.50183 -10.14366 -9.76214 -9.49413 -8.24385 -6.26177 1.03742 1.34533 1.41514 1.51105 1.84874 1.87042 2.35567 2.77265 2.86543 3.56409 3.65272 3.80308 3.91789 4.03103 4.05144 4.13397 4.19641 4.31774 4.38935 4.47589 4.49874 4.51497 4.53239 4.60493 4.62427 4.69787 4.80723 4.83527 4.93799 4.95801 4.97035 5.09471 5.13650 5.24266 5.33720 5.46429 5.52642 5.58926 5.78857 6.05257 6.19603 6.29362 6.35685 6.66445 6.70299 7.32169 7.89067 8.78481 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.021557 B = 0.003363 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.591177 B = 8322.676458 C = 9093.379476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.416 6.416 3 C 0.060 3.940 4 C -0.144 4.144 5 C 0.115 3.885 6 H 0.070 0.930 7 N -0.848 5.848 8 C -0.020 4.020 9 C -0.012 4.012 10 C -0.052 4.052 11 N -0.257 5.257 12 C 0.139 3.861 13 C 0.009 3.991 14 C -0.511 4.511 15 H 0.042 0.958 16 C 0.042 3.958 17 N -0.891 5.891 18 Si 0.940 3.060 19 H -0.283 1.283 20 H -0.276 1.276 21 H -0.267 1.267 22 C -0.182 4.182 23 C -0.181 4.181 24 N -0.118 5.118 25 N -0.307 5.307 26 H 0.096 0.904 27 H 0.050 0.950 28 H 0.047 0.953 29 H 0.057 0.943 30 H 0.050 0.950 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.344 0.656 34 H 0.347 0.653 35 H 0.096 0.904 36 H 0.086 0.914 37 H 0.192 0.808 38 H 0.074 0.926 39 H 0.142 0.858 40 H 0.273 0.727 41 H 0.088 0.912 42 H 0.076 0.924 43 H 0.067 0.933 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.432 -9.605 3.555 18.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.335 6.335 3 C -0.016 4.016 4 C -0.184 4.184 5 C 0.003 3.997 6 H 0.088 0.912 7 N -0.379 5.379 8 C -0.059 4.059 9 C -0.152 4.152 10 C -0.205 4.205 11 N -0.049 5.049 12 C 0.019 3.981 13 C 0.008 3.992 14 C -0.548 4.548 15 H 0.060 0.940 16 C -0.159 4.159 17 N -0.529 5.529 18 Si 0.766 3.234 19 H -0.209 1.209 20 H -0.202 1.202 21 H -0.192 1.192 22 C -0.220 4.220 23 C -0.219 4.219 24 N -0.096 5.096 25 N -0.173 5.173 26 H 0.115 0.885 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.158 0.842 34 H 0.161 0.839 35 H 0.115 0.885 36 H 0.105 0.895 37 H 0.209 0.791 38 H 0.093 0.907 39 H 0.160 0.840 40 H 0.083 0.917 41 H 0.106 0.894 42 H 0.095 0.905 43 H 0.085 0.915 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -15.298 -8.202 2.391 17.522 hybrid contribution 0.568 -1.626 0.716 1.865 sum -14.731 -9.828 3.106 17.979 Atomic orbital electron populations 1.22922 0.79654 1.03796 1.00779 1.87838 1.21367 1.28759 1.95583 1.22568 0.93989 0.84418 1.00643 1.22281 0.93557 0.98456 1.04093 1.21115 0.93685 0.91506 0.93423 0.91168 1.58755 1.20216 1.55048 1.03913 1.19961 0.94021 0.88215 1.03734 1.21989 0.98931 0.99077 0.95180 1.23625 1.03877 0.87701 1.05258 1.47457 1.25127 1.12687 1.19658 1.22152 0.86326 0.91009 0.98651 1.19125 0.95415 0.90894 0.93800 1.20662 1.17541 1.23029 0.93521 0.93990 1.25412 0.96801 0.98930 0.94760 1.69720 1.42617 1.40560 1.00021 0.85785 0.78731 0.80842 0.78059 1.20872 1.20203 1.19188 1.23046 0.99424 0.96929 1.02638 1.22779 0.97942 1.07077 0.94058 1.78083 1.04180 1.21155 1.06226 1.74810 1.20645 0.98511 1.23302 0.88520 0.93130 0.93475 0.92461 0.93200 0.90364 0.90702 0.84182 0.83942 0.88526 0.89532 0.79146 0.90748 0.84039 0.91723 0.89397 0.90493 0.91484 0.89488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 11.01 113.37 1.25 1.56 16 2 O -0.42 -8.02 10.70 -148.98 -1.59 -9.61 16 3 C 0.06 1.02 5.71 71.98 0.41 1.43 16 4 C -0.14 -2.52 5.23 30.59 0.16 -2.36 16 5 C 0.12 2.47 2.79 44.91 0.13 2.60 16 6 H 0.07 1.83 8.13 -2.39 -0.02 1.81 16 7 N -0.85 -17.28 8.90 -168.67 -1.50 -18.78 16 8 C -0.02 -0.50 5.44 29.85 0.16 -0.33 16 9 C -0.01 -0.42 6.23 41.60 0.26 -0.16 16 10 C -0.05 -1.99 11.49 83.49 0.96 -1.03 16 11 N -0.26 -11.12 3.43 -347.72 -1.19 -12.31 16 12 C 0.14 6.14 6.14 86.38 0.53 6.67 16 13 C 0.01 0.43 1.93 -52.93 -0.10 0.32 16 14 C -0.51 -27.09 9.00 25.60 0.23 -26.86 16 15 H 0.04 2.35 7.89 -2.91 -0.02 2.32 16 16 C 0.04 2.13 5.10 84.65 0.43 2.56 16 17 N -0.89 -44.30 10.93 21.45 0.23 -44.07 16 18 Si 0.94 40.69 29.58 68.60 2.03 42.72 16 19 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 20 H -0.28 -11.65 7.11 99.48 0.71 -10.95 16 21 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 22 C -0.18 -7.89 9.88 30.59 0.30 -7.59 16 23 C -0.18 -8.10 9.17 30.59 0.28 -7.82 16 24 N -0.12 -5.33 11.59 37.02 0.43 -4.90 16 25 N -0.31 -12.93 12.39 -48.60 -0.60 -13.53 16 26 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.05 0.53 8.14 -2.39 -0.02 0.52 16 28 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.06 0.82 6.87 -2.39 -0.02 0.80 16 30 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.34 5.90 7.55 -89.69 -0.68 5.22 16 34 H 0.35 5.92 9.00 -89.69 -0.81 5.11 16 35 H 0.10 1.98 8.12 -2.39 -0.02 1.97 16 36 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 37 H 0.19 6.31 8.06 -2.91 -0.02 6.29 16 38 H 0.07 3.05 7.94 -2.39 -0.02 3.03 16 39 H 0.14 6.57 5.17 -2.39 -0.01 6.55 16 40 H 0.27 12.71 8.32 -92.71 -0.77 11.94 16 41 H 0.09 3.41 8.08 -2.39 -0.02 3.39 16 42 H 0.08 3.38 8.14 -2.39 -0.02 3.36 16 43 H 0.07 3.06 8.14 -2.39 -0.02 3.04 16 44 H 0.09 3.79 7.47 -2.39 -0.02 3.77 16 Total: -1.00 -61.03 363.84 2.32 -58.71 By element: Atomic # 1 Polarization: 33.26 SS G_CDS: -0.48 Total: 32.78 kcal Atomic # 6 Polarization: -36.00 SS G_CDS: 5.00 Total: -31.01 kcal Atomic # 7 Polarization: -90.96 SS G_CDS: -2.63 Total: -93.59 kcal Atomic # 8 Polarization: -8.02 SS G_CDS: -1.59 Total: -9.61 kcal Atomic # 14 Polarization: 40.69 SS G_CDS: 2.03 Total: 42.72 kcal Total: -61.03 2.32 -58.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600970919.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.035 kcal (2) G-P(sol) polarization free energy of solvation -61.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds