Wall clock time and date at job start Tue Mar 31 2020 03:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47341 * 2 1 4 4 H 1.09001 * 109.47289 * 304.99525 * 3 2 1 5 5 C 1.50701 * 109.47212 * 184.99607 * 3 2 1 6 6 H 1.08001 * 120.00213 * 239.99467 * 5 3 2 7 7 C 1.37880 * 119.99755 * 60.00086 * 5 3 2 8 8 N 1.31508 * 119.99915 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99825 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.46734 * 90.00109 * 9 7 5 11 11 H 1.48499 * 109.47268 * 210.00057 * 9 7 5 12 12 H 1.48498 * 109.47211 * 330.00316 * 9 7 5 13 13 N 1.46506 * 109.47289 * 64.99653 * 3 2 1 14 14 C 1.34777 * 120.00033 * 275.00400 * 13 3 2 15 15 O 1.21609 * 119.99876 * 359.97438 * 14 13 3 16 16 C 1.47426 * 120.00065 * 179.97438 * 14 13 3 17 17 C 1.41290 * 126.41457 * 359.68671 * 16 14 13 18 18 N 1.30442 * 108.02607 * 179.87934 * 17 16 14 19 19 N 1.39935 * 108.89572 * 0.38391 * 18 17 16 20 20 C 1.46499 * 125.75976 * 179.73294 * 19 18 17 21 21 C 1.53006 * 109.46728 * 305.02608 * 20 19 18 22 22 N 1.46902 * 109.46969 * 179.97438 * 21 20 19 23 23 C 1.46899 * 111.00133 * 169.99667 * 22 21 20 24 24 C 1.46899 * 110.99882 * 293.95373 * 22 21 20 25 25 C 1.34263 * 108.48965 * 359.75303 * 19 18 17 26 26 H 1.09006 * 109.46596 * 60.00412 * 1 2 3 27 27 H 1.09004 * 109.47031 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47281 * 300.00513 * 1 2 3 29 29 H 1.09004 * 109.47686 * 239.99815 * 2 1 3 30 30 H 1.09002 * 109.46818 * 120.00038 * 2 1 3 31 31 H 0.97003 * 119.99339 * 179.97438 * 8 7 5 32 32 H 0.97000 * 119.99812 * 94.99561 * 13 3 2 33 33 H 1.08005 * 125.98848 * 0.02562 * 17 16 14 34 34 H 1.08997 * 109.47117 * 65.02160 * 20 19 18 35 35 H 1.09003 * 109.47428 * 185.02611 * 20 19 18 36 36 H 1.08997 * 109.46956 * 299.99651 * 21 20 19 37 37 H 1.08997 * 109.47552 * 59.99684 * 21 20 19 38 38 H 1.09006 * 109.46656 * 59.99659 * 23 22 21 39 39 H 1.08998 * 109.47381 * 179.97438 * 23 22 21 40 40 H 1.09000 * 109.47214 * 300.00019 * 23 22 21 41 41 H 1.08998 * 109.47734 * 59.99902 * 24 22 21 42 42 H 1.08995 * 109.47328 * 180.02562 * 24 22 21 43 43 H 1.09003 * 109.47086 * 299.99619 * 24 22 21 44 44 H 1.07999 * 126.28891 * 179.97438 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5420 1.4442 -0.1237 6 1 4.1473 1.8889 0.6524 7 6 4.1434 0.8783 -1.2279 8 7 3.4063 0.3365 -2.1727 9 14 6.0050 0.8811 -1.3816 10 1 6.5548 -0.3504 -0.7599 11 1 6.3831 0.9222 -2.8171 12 1 6.5570 2.0736 -0.6899 13 7 1.6524 2.0975 1.2518 14 6 0.4351 2.6644 1.3669 15 8 -0.3413 2.6326 0.4315 16 6 0.0449 3.3232 2.6268 17 6 0.8326 3.4336 3.7945 18 7 0.1405 4.0846 4.6882 19 7 -1.1081 4.4092 4.1462 20 6 -2.1777 5.1357 4.8350 21 6 -2.5133 4.4252 6.1478 22 7 -3.5854 5.1540 6.8388 23 6 -4.0982 4.3809 7.9779 24 6 -3.1274 6.4823 7.2675 25 6 -1.1608 3.9423 2.8885 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.8295 -0.0613 -2.9496 32 1 2.2719 2.1231 1.9978 33 1 1.8334 3.0487 3.9237 34 1 -1.8482 6.1530 5.0464 35 1 -3.0638 5.1652 4.2009 36 1 -2.8428 3.4079 5.9364 37 1 -1.6273 4.3957 6.7819 38 1 -3.2894 4.1958 8.6848 39 1 -4.8903 4.9436 8.4718 40 1 -4.4949 3.4299 7.6224 41 1 -2.8184 7.0590 6.3958 42 1 -3.9403 7.0001 7.7766 43 1 -2.2836 6.3733 7.9488 44 1 -1.9936 4.0338 2.2070 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601445343.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:31 Heat of formation + Delta-G solvation = 19.850085 kcal Electronic energy + Delta-G solvation = -23384.466089 eV Core-core repulsion = 19951.726255 eV Total energy + Delta-G solvation = -3432.739835 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.34217 -40.17609 -38.63890 -36.80124 -34.71154 -34.12173 -32.74943 -31.31691 -30.06872 -28.72900 -28.52843 -25.79168 -24.98552 -23.71796 -22.65274 -21.60561 -21.47553 -20.75482 -19.27203 -18.08714 -17.14283 -16.98106 -16.87259 -16.33282 -16.13287 -16.00962 -15.78469 -15.32030 -15.02038 -14.73701 -14.55513 -14.30036 -13.75409 -13.70993 -13.42409 -13.34545 -13.12409 -12.99818 -12.86345 -12.69416 -12.63309 -12.58487 -12.27362 -12.12974 -12.00756 -11.88331 -11.53159 -10.99306 -10.63426 -10.54914 -10.46076 -9.77602 -9.47260 -9.40705 -8.11640 -6.28214 0.60209 1.22991 1.33901 1.47357 1.47950 1.58275 2.41049 2.69206 2.81311 2.92559 3.17965 3.54251 3.75224 3.86937 3.96443 4.22220 4.24569 4.27202 4.40039 4.45182 4.55507 4.58477 4.63622 4.66372 4.73760 4.77280 4.82543 4.88355 4.98715 5.02215 5.13923 5.32088 5.44084 5.50656 5.62444 5.70751 5.78589 5.86811 5.91225 5.98721 6.01390 6.23096 6.53451 6.80220 7.12907 7.38912 7.70274 8.93782 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.032212 B = 0.002771 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.045369 B =10102.807352 C =10539.285294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.121 4.121 3 C 0.280 3.720 4 H -0.001 1.001 5 C -0.546 4.546 6 H 0.071 0.929 7 C 0.015 3.985 8 N -0.915 5.915 9 Si 0.969 3.031 10 H -0.272 1.272 11 H -0.288 1.288 12 H -0.266 1.266 13 N -0.702 5.702 14 C 0.579 3.421 15 O -0.597 6.597 16 C -0.307 4.307 17 C 0.085 3.915 18 N -0.315 5.315 19 N -0.357 5.357 20 C 0.131 3.869 21 C 0.052 3.948 22 N -0.551 5.551 23 C 0.024 3.976 24 C 0.015 3.985 25 C 0.133 3.867 26 H 0.026 0.974 27 H 0.044 0.956 28 H 0.043 0.957 29 H 0.072 0.928 30 H 0.039 0.961 31 H 0.264 0.736 32 H 0.401 0.599 33 H 0.208 0.792 34 H 0.099 0.901 35 H 0.128 0.872 36 H 0.074 0.926 37 H 0.038 0.962 38 H 0.025 0.975 39 H 0.085 0.915 40 H 0.070 0.930 41 H 0.077 0.923 42 H 0.083 0.917 43 H 0.025 0.975 44 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.073 9.609 19.798 25.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.160 4.160 3 C 0.177 3.823 4 H 0.017 0.983 5 C -0.584 4.584 6 H 0.089 0.911 7 C -0.185 4.185 8 N -0.553 5.553 9 Si 0.794 3.206 10 H -0.197 1.197 11 H -0.213 1.213 12 H -0.190 1.190 13 N -0.350 5.350 14 C 0.367 3.633 15 O -0.480 6.480 16 C -0.322 4.322 17 C -0.102 4.102 18 N -0.135 5.135 19 N -0.136 5.136 20 C 0.011 3.989 21 C -0.077 4.077 22 N -0.275 5.275 23 C -0.124 4.124 24 C -0.133 4.133 25 C -0.019 4.019 26 H 0.046 0.954 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.090 0.910 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.235 0.765 33 H 0.224 0.776 34 H 0.117 0.883 35 H 0.146 0.854 36 H 0.093 0.907 37 H 0.056 0.944 38 H 0.044 0.956 39 H 0.103 0.897 40 H 0.089 0.911 41 H 0.095 0.905 42 H 0.102 0.898 43 H 0.043 0.957 44 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -13.096 10.117 19.926 25.902 hybrid contribution 1.898 -0.661 -0.509 2.073 sum -11.198 9.455 19.417 24.327 Atomic orbital electron populations 1.21667 0.96980 0.98990 1.00322 1.21785 0.93798 0.99212 1.01189 1.18350 0.93540 0.89111 0.81321 0.98306 1.21589 0.91492 1.38706 1.06626 0.91082 1.25751 1.03163 0.94493 0.95074 1.70051 1.36948 1.38453 1.09875 0.85395 0.79338 0.78809 0.77074 1.19725 1.21337 1.18990 1.46027 1.15289 1.56176 1.17486 1.17661 0.81709 0.77541 0.86362 1.90706 1.52783 1.62593 1.41907 1.20347 0.98411 1.16503 0.96982 1.24375 1.00516 0.95763 0.89584 1.77058 0.92425 1.20989 1.23024 1.48642 1.12456 1.42685 1.09773 1.22028 0.87185 0.95070 0.94621 1.22190 0.93489 0.97817 0.94233 1.61957 1.33729 1.04243 1.27596 1.22439 0.99701 0.98835 0.91448 1.22572 0.99979 0.89959 1.00753 1.23214 0.98826 0.92683 0.87210 0.95438 0.93746 0.93788 0.91010 0.94188 0.92671 0.76478 0.77579 0.88294 0.85367 0.90741 0.94387 0.95616 0.89679 0.91092 0.90472 0.89829 0.95653 0.77882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.61 8.51 71.98 0.61 -5.00 16 2 C -0.12 -6.04 5.45 30.59 0.17 -5.88 16 3 C 0.28 14.55 2.24 44.24 0.10 14.65 16 4 H 0.00 -0.06 7.58 -2.39 -0.02 -0.08 16 5 C -0.55 -29.07 8.73 25.60 0.22 -28.84 16 6 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 7 C 0.02 0.82 5.29 84.66 0.45 1.27 16 8 N -0.91 -52.61 11.29 21.45 0.24 -52.37 16 9 Si 0.97 42.34 29.54 68.60 2.03 44.36 16 10 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 11 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 12 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 13 N -0.70 -29.74 5.01 -449.36 -2.25 -31.99 16 14 C 0.58 23.79 6.38 86.66 0.55 24.34 16 15 O -0.60 -28.75 14.03 -4.06 -0.06 -28.81 16 16 C -0.31 -9.76 6.13 -20.15 -0.12 -9.88 16 17 C 0.08 2.30 11.50 85.65 0.99 3.29 16 18 N -0.31 -8.23 12.33 -56.27 -0.69 -8.92 16 19 N -0.36 -7.96 3.65 -346.29 -1.26 -9.23 16 20 C 0.13 1.93 6.41 86.38 0.55 2.49 16 21 C 0.05 0.79 5.13 86.30 0.44 1.23 16 22 N -0.55 -7.06 5.02 -948.85 -4.76 -11.82 16 23 C 0.02 0.26 9.57 127.69 1.22 1.48 16 24 C 0.02 0.15 9.32 127.69 1.19 1.34 16 25 C 0.13 3.43 11.25 84.27 0.95 4.38 16 26 H 0.03 1.34 7.84 -2.38 -0.02 1.33 16 27 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.04 1.96 5.64 -2.39 -0.01 1.95 16 29 H 0.07 4.00 5.95 -2.38 -0.01 3.98 16 30 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 32 H 0.40 14.44 7.49 -92.71 -0.69 13.74 16 33 H 0.21 4.53 7.50 -2.91 -0.02 4.50 16 34 H 0.10 1.27 6.55 -2.39 -0.02 1.26 16 35 H 0.13 1.39 8.06 -2.39 -0.02 1.37 16 36 H 0.07 1.25 8.06 -2.39 -0.02 1.23 16 37 H 0.04 0.70 8.12 -2.39 -0.02 0.68 16 38 H 0.03 0.29 8.14 -2.38 -0.02 0.27 16 39 H 0.08 0.69 8.12 -2.39 -0.02 0.67 16 40 H 0.07 0.76 8.12 -2.39 -0.02 0.74 16 41 H 0.08 0.68 6.47 -2.39 -0.02 0.67 16 42 H 0.08 0.65 8.12 -2.39 -0.02 0.63 16 43 H 0.02 0.28 8.14 -2.39 -0.02 0.26 16 44 H 0.20 4.38 8.06 -2.91 -0.02 4.36 16 Total: -1.00 -69.48 358.43 0.86 -68.62 By element: Atomic # 1 Polarization: 25.00 SS G_CDS: 0.30 Total: 25.30 kcal Atomic # 6 Polarization: -2.46 SS G_CDS: 7.32 Total: 4.86 kcal Atomic # 7 Polarization: -105.60 SS G_CDS: -8.73 Total: -114.33 kcal Atomic # 8 Polarization: -28.75 SS G_CDS: -0.06 Total: -28.81 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.36 kcal Total: -69.48 0.86 -68.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601445343.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.471 kcal (2) G-P(sol) polarization free energy of solvation -69.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds