Wall clock time and date at job start Tue Mar 31 2020 03:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13612 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47114 * 72.18094 * 3 2 1 5 5 C 1.52997 * 109.47078 * 179.97438 * 4 3 2 6 6 C 1.52998 * 109.47078 * 179.97438 * 5 4 3 7 7 N 1.46503 * 109.46902 * 179.97438 * 6 5 4 8 8 C 1.34777 * 119.99698 * 179.97438 * 7 6 5 9 9 O 1.21577 * 120.00491 * 354.92447 * 8 7 6 10 10 N 1.34779 * 119.99724 * 174.91875 * 8 7 6 11 11 C 1.47077 * 120.88116 * 184.71934 * 10 8 7 12 12 C 1.53694 * 108.28002 * 128.75922 * 11 10 8 13 13 N 1.46902 * 109.25585 * 54.07963 * 12 11 10 14 14 C 1.46906 * 110.99796 * 172.61479 * 13 12 11 15 15 C 1.50705 * 109.46502 * 294.30051 * 14 13 12 16 16 H 1.07994 * 120.00387 * 359.97438 * 15 14 13 17 17 C 1.37876 * 119.99140 * 180.02562 * 15 14 13 18 18 N 1.31513 * 120.00555 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99592 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47337 * 59.99542 * 19 17 15 21 21 H 1.48502 * 109.47239 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.47174 * 299.99552 * 19 17 15 23 23 C 1.46894 * 111.26942 * 296.76144 * 13 12 11 24 24 C 1.47079 * 120.88359 * 5.00108 * 10 8 7 25 25 H 1.09002 * 109.46651 * 312.18128 * 3 2 1 26 26 H 1.08997 * 109.46822 * 192.18548 * 3 2 1 27 27 H 1.09001 * 109.46881 * 59.99829 * 4 3 2 28 28 H 1.08997 * 109.46742 * 300.00059 * 4 3 2 29 29 H 1.09001 * 109.47273 * 60.00229 * 5 4 3 30 30 H 1.09005 * 109.47083 * 300.00207 * 5 4 3 31 31 H 1.08992 * 109.47311 * 299.99807 * 6 5 4 32 32 H 1.08996 * 109.47284 * 60.00181 * 6 5 4 33 33 H 0.96995 * 119.99930 * 0.02562 * 7 6 5 34 34 H 1.09002 * 109.63307 * 248.52579 * 11 10 8 35 35 H 1.08998 * 109.62919 * 9.10886 * 11 10 8 36 36 H 1.09002 * 109.64637 * 294.08218 * 12 11 10 37 37 H 1.08993 * 109.42829 * 173.95100 * 12 11 10 38 38 H 1.08994 * 109.47151 * 54.29915 * 14 13 12 39 39 H 1.08999 * 109.46938 * 174.30879 * 14 13 12 40 40 H 0.97005 * 120.00001 * 180.02562 * 18 17 15 41 41 H 1.09007 * 109.49598 * 303.14255 * 23 13 12 42 42 H 1.09005 * 109.49388 * 183.06457 * 23 13 12 43 43 H 1.09000 * 109.62549 * 350.89650 * 24 10 8 44 44 H 1.09003 * 109.62960 * 111.47040 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1183 -0.4405 -1.3733 5 6 4.6483 -0.4392 -1.3735 6 6 5.1585 -0.8810 -2.7465 7 7 6.6235 -0.8792 -2.7469 8 6 7.2975 -1.2368 -3.8578 9 8 6.6935 -1.6490 -4.8291 10 7 8.6412 -1.1375 -3.8921 11 6 9.3881 -1.4238 -5.1263 12 6 10.3282 -0.2406 -5.4064 13 7 11.1598 0.0085 -4.2213 14 6 12.1918 1.0149 -4.5045 15 6 13.1596 0.4691 -5.5227 16 1 13.0221 -0.5259 -5.9193 17 6 14.2212 1.2398 -5.9469 18 7 14.3889 2.4514 -5.4636 19 14 15.4205 0.5637 -7.2095 20 1 14.6906 0.2382 -8.4610 21 1 16.4645 1.5805 -7.4948 22 1 16.0604 -0.6656 -6.6757 23 6 10.3400 0.4051 -3.0688 24 6 9.4000 -0.7458 -2.6946 25 1 2.9717 -0.6893 0.7616 26 1 2.9709 1.0053 0.2169 27 1 2.7546 0.2494 -2.1348 28 1 2.7554 -1.4452 -1.5900 29 1 5.0123 -1.1289 -0.6119 30 1 5.0108 0.5657 -1.1568 31 1 4.7960 -1.8859 -2.9627 32 1 4.7945 -0.1918 -3.5084 33 1 7.1083 -0.6213 -1.9474 34 1 9.9709 -2.3360 -4.9984 35 1 8.6917 -1.5442 -5.9561 36 1 9.7403 0.6492 -5.6316 37 1 10.9678 -0.4790 -6.2561 38 1 11.7219 1.9167 -4.8969 39 1 12.7275 1.2544 -3.5860 40 1 15.1357 2.9937 -5.7624 41 1 9.7519 1.2859 -3.3265 42 1 10.9883 0.6348 -2.2231 43 1 8.7114 -0.4178 -1.9159 44 1 9.9839 -1.5941 -2.3373 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601570917.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:27:02 Heat of formation + Delta-G solvation = -1.219443 kcal Electronic energy + Delta-G solvation = -22919.417883 eV Core-core repulsion = 19485.764405 eV Total energy + Delta-G solvation = -3433.653478 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.24899 -37.92471 -37.48030 -36.08746 -34.45086 -33.92370 -32.39482 -30.85755 -29.80729 -28.05987 -25.61724 -24.56939 -23.12274 -22.12788 -21.90964 -20.71519 -19.25360 -18.18622 -17.66334 -16.56025 -16.48620 -16.19316 -15.53925 -15.05046 -14.67884 -14.59382 -14.45840 -14.10028 -13.99449 -13.80357 -13.54402 -13.44447 -13.26244 -12.69881 -12.50319 -12.23188 -12.07675 -11.98681 -11.80978 -11.59674 -11.30710 -11.18619 -11.14974 -10.84959 -10.77187 -10.62403 -10.52819 -10.01704 -9.86569 -9.30889 -9.18543 -8.49396 -8.34171 -7.34648 -6.07522 -4.09394 2.29417 2.35577 2.70109 3.29032 3.31446 3.35647 3.38433 3.48654 3.89988 4.26597 4.35568 4.38030 4.66073 4.76634 4.80539 4.89853 4.99884 5.18596 5.22835 5.27146 5.31730 5.33854 5.40199 5.52210 5.62848 5.72570 5.75259 5.81853 5.92742 6.02172 6.16885 6.39160 6.42010 6.54528 6.67135 7.03251 7.12553 7.20026 7.26317 7.72567 7.97491 8.00141 8.10657 8.45974 8.65968 8.97627 9.55270 11.03186 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.038698 B = 0.002243 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.385243 B =12482.404804 C =12890.298706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C 0.205 3.795 3 C -0.026 4.026 4 C -0.114 4.114 5 C -0.131 4.131 6 C 0.137 3.863 7 N -0.752 5.752 8 C 0.707 3.293 9 O -0.597 6.597 10 N -0.625 5.625 11 C 0.133 3.867 12 C 0.051 3.949 13 N -0.535 5.535 14 C 0.194 3.806 15 C -0.510 4.510 16 H 0.064 0.936 17 C 0.056 3.944 18 N -0.898 5.898 19 Si 0.899 3.101 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.276 1.276 23 C 0.040 3.960 24 C 0.119 3.881 25 H 0.110 0.890 26 H 0.111 0.889 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.395 0.605 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.024 0.976 37 H 0.097 0.903 38 H -0.009 1.009 39 H 0.031 0.969 40 H 0.262 0.738 41 H 0.026 0.974 42 H 0.080 0.920 43 H 0.069 0.931 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.814 -4.941 11.906 21.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.117 5.117 2 C -0.113 4.113 3 C -0.066 4.066 4 C -0.153 4.153 5 C -0.169 4.169 6 C 0.013 3.987 7 N -0.411 5.411 8 C 0.408 3.592 9 O -0.475 6.475 10 N -0.363 5.363 11 C 0.010 3.990 12 C -0.079 4.079 13 N -0.260 5.260 14 C 0.069 3.931 15 C -0.549 4.549 16 H 0.082 0.918 17 C -0.145 4.145 18 N -0.538 5.538 19 Si 0.727 3.273 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.201 1.201 23 C -0.089 4.089 24 C -0.005 4.005 25 H 0.128 0.872 26 H 0.129 0.871 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.232 0.768 34 H 0.089 0.911 35 H 0.106 0.894 36 H 0.043 0.957 37 H 0.115 0.885 38 H 0.009 0.991 39 H 0.049 0.951 40 H 0.072 0.928 41 H 0.044 0.956 42 H 0.099 0.901 43 H 0.087 0.913 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -18.608 -5.498 11.288 22.448 hybrid contribution 1.087 0.768 -0.371 1.381 sum -17.522 -4.730 10.917 21.179 Atomic orbital electron populations 1.81269 1.13226 1.08813 1.08359 1.29282 0.95409 0.93228 0.93353 1.19335 0.81430 1.05442 1.00386 1.21441 0.95216 1.03240 0.95419 1.21782 0.94886 1.02910 0.97339 1.21128 0.78858 1.01916 0.96825 1.45244 1.06917 1.74409 1.14512 1.15828 0.81573 0.78608 0.83184 1.90890 1.67682 1.53207 1.35760 1.47420 1.03802 1.71740 1.13295 1.21833 0.93405 0.98362 0.85392 1.22455 0.94478 0.95703 0.95219 1.62078 1.12760 1.47640 1.03522 1.19724 0.88355 0.88032 0.96981 1.21106 1.09541 1.01132 1.23111 0.91801 1.24988 0.97863 0.94849 0.96845 1.69944 1.30859 1.09164 1.43793 0.86547 0.80570 0.78582 0.81627 1.20227 1.21389 1.20135 1.22384 0.95296 0.94780 0.96488 1.21763 0.93824 0.98551 0.86341 0.87173 0.87142 0.90508 0.90521 0.90610 0.90564 0.91570 0.91722 0.76827 0.91149 0.89384 0.95743 0.88490 0.99122 0.95062 0.92829 0.95551 0.90133 0.91254 0.90640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -4.49 18.54 42.16 0.78 -3.71 16 2 C 0.21 1.29 15.43 -20.76 -0.32 0.97 16 3 C -0.03 -0.05 5.70 -29.52 -0.17 -0.21 16 4 C -0.11 -0.32 5.17 -26.73 -0.14 -0.46 16 5 C -0.13 -0.43 5.33 -26.73 -0.14 -0.58 16 6 C 0.14 1.06 5.68 -4.04 -0.02 1.03 16 7 N -0.75 -7.46 5.47 -65.23 -0.36 -7.81 16 8 C 0.71 10.36 8.31 -86.92 -0.72 9.64 16 9 O -0.60 -10.96 15.83 5.30 0.08 -10.88 16 10 N -0.63 -9.13 3.00 -177.92 -0.53 -9.66 16 11 C 0.13 2.14 6.61 -3.37 -0.02 2.12 16 12 C 0.05 0.95 5.47 -3.46 -0.02 0.93 16 13 N -0.53 -10.71 4.62 -235.46 -1.09 -11.80 16 14 C 0.19 4.81 4.72 -4.97 -0.02 4.79 16 15 C -0.51 -13.77 8.41 -34.44 -0.29 -14.06 16 16 H 0.06 1.69 7.13 -52.49 -0.37 1.32 16 17 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 18 N -0.90 -25.99 13.29 55.43 0.74 -25.25 16 19 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 20 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 21 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 23 C 0.04 0.64 5.62 -3.71 -0.02 0.61 16 24 C 0.12 1.46 6.59 -3.61 -0.02 1.44 16 25 H 0.11 -0.01 8.14 -51.93 -0.42 -0.43 16 26 H 0.11 0.01 8.14 -51.93 -0.42 -0.41 16 27 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.40 2.91 5.97 -40.82 -0.24 2.67 16 34 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 35 H 0.09 1.45 7.09 -51.93 -0.37 1.08 16 36 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.10 1.95 6.67 -51.93 -0.35 1.60 16 38 H -0.01 -0.24 8.12 -51.93 -0.42 -0.67 16 39 H 0.03 0.82 7.97 -51.93 -0.41 0.41 16 40 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 41 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.08 1.21 7.99 -51.93 -0.41 0.79 16 43 H 0.07 0.60 5.63 -51.93 -0.29 0.30 16 44 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 LS Contribution 362.69 15.07 5.47 5.47 Total: -1.00 -34.90 362.69 -9.03 -43.92 By element: Atomic # 1 Polarization: 3.04 SS G_CDS: -7.08 Total: -4.04 kcal Atomic # 6 Polarization: 9.69 SS G_CDS: -2.01 Total: 7.68 kcal Atomic # 7 Polarization: -57.78 SS G_CDS: -0.46 Total: -58.24 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: 0.08 Total: -10.88 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.90 -9.03 -43.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601570917.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.703 kcal (2) G-P(sol) polarization free energy of solvation -34.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds