Wall clock time and date at job start Tue Mar 31 2020 03:27:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13612 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47114 * 72.18094 * 3 2 1 5 5 C 1.52997 * 109.47078 * 179.97438 * 4 3 2 6 6 C 1.52998 * 109.47078 * 179.97438 * 5 4 3 7 7 N 1.46503 * 109.46902 * 179.97438 * 6 5 4 8 8 C 1.34777 * 119.99698 * 179.97438 * 7 6 5 9 9 O 1.21577 * 120.00491 * 354.92447 * 8 7 6 10 10 N 1.34779 * 119.99724 * 174.91875 * 8 7 6 11 11 C 1.47077 * 120.88116 * 184.71934 * 10 8 7 12 12 C 1.53694 * 108.28002 * 128.75922 * 11 10 8 13 13 N 1.46902 * 109.25585 * 54.07963 * 12 11 10 14 14 C 1.46906 * 110.99796 * 172.61479 * 13 12 11 15 15 C 1.50705 * 109.46502 * 294.30051 * 14 13 12 16 16 H 1.07994 * 120.00387 * 359.97438 * 15 14 13 17 17 C 1.37876 * 119.99140 * 180.02562 * 15 14 13 18 18 N 1.31513 * 120.00555 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99592 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47337 * 59.99542 * 19 17 15 21 21 H 1.48502 * 109.47239 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.47174 * 299.99552 * 19 17 15 23 23 C 1.46894 * 111.26942 * 296.76144 * 13 12 11 24 24 C 1.47079 * 120.88359 * 5.00108 * 10 8 7 25 25 H 1.09002 * 109.46651 * 312.18128 * 3 2 1 26 26 H 1.08997 * 109.46822 * 192.18548 * 3 2 1 27 27 H 1.09001 * 109.46881 * 59.99829 * 4 3 2 28 28 H 1.08997 * 109.46742 * 300.00059 * 4 3 2 29 29 H 1.09001 * 109.47273 * 60.00229 * 5 4 3 30 30 H 1.09005 * 109.47083 * 300.00207 * 5 4 3 31 31 H 1.08992 * 109.47311 * 299.99807 * 6 5 4 32 32 H 1.08996 * 109.47284 * 60.00181 * 6 5 4 33 33 H 0.96995 * 119.99930 * 0.02562 * 7 6 5 34 34 H 1.09002 * 109.63307 * 248.52579 * 11 10 8 35 35 H 1.08998 * 109.62919 * 9.10886 * 11 10 8 36 36 H 1.09002 * 109.64637 * 294.08218 * 12 11 10 37 37 H 1.08993 * 109.42829 * 173.95100 * 12 11 10 38 38 H 1.08994 * 109.47151 * 54.29915 * 14 13 12 39 39 H 1.08999 * 109.46938 * 174.30879 * 14 13 12 40 40 H 0.97005 * 120.00001 * 180.02562 * 18 17 15 41 41 H 1.09007 * 109.49598 * 303.14255 * 23 13 12 42 42 H 1.09005 * 109.49388 * 183.06457 * 23 13 12 43 43 H 1.09000 * 109.62549 * 350.89650 * 24 10 8 44 44 H 1.09003 * 109.62960 * 111.47040 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1183 -0.4405 -1.3733 5 6 4.6483 -0.4392 -1.3735 6 6 5.1585 -0.8810 -2.7465 7 7 6.6235 -0.8792 -2.7469 8 6 7.2975 -1.2368 -3.8578 9 8 6.6935 -1.6490 -4.8291 10 7 8.6412 -1.1375 -3.8921 11 6 9.3881 -1.4238 -5.1263 12 6 10.3282 -0.2406 -5.4064 13 7 11.1598 0.0085 -4.2213 14 6 12.1918 1.0149 -4.5045 15 6 13.1596 0.4691 -5.5227 16 1 13.0221 -0.5259 -5.9193 17 6 14.2212 1.2398 -5.9469 18 7 14.3889 2.4514 -5.4636 19 14 15.4205 0.5637 -7.2095 20 1 14.6906 0.2382 -8.4610 21 1 16.4645 1.5805 -7.4948 22 1 16.0604 -0.6656 -6.6757 23 6 10.3400 0.4051 -3.0688 24 6 9.4000 -0.7458 -2.6946 25 1 2.9717 -0.6893 0.7616 26 1 2.9709 1.0053 0.2169 27 1 2.7546 0.2494 -2.1348 28 1 2.7554 -1.4452 -1.5900 29 1 5.0123 -1.1289 -0.6119 30 1 5.0108 0.5657 -1.1568 31 1 4.7960 -1.8859 -2.9627 32 1 4.7945 -0.1918 -3.5084 33 1 7.1083 -0.6213 -1.9474 34 1 9.9709 -2.3360 -4.9984 35 1 8.6917 -1.5442 -5.9561 36 1 9.7403 0.6492 -5.6316 37 1 10.9678 -0.4790 -6.2561 38 1 11.7219 1.9167 -4.8969 39 1 12.7275 1.2544 -3.5860 40 1 15.1357 2.9937 -5.7624 41 1 9.7519 1.2859 -3.3265 42 1 10.9883 0.6348 -2.2231 43 1 8.7114 -0.4178 -1.9159 44 1 9.9839 -1.5941 -2.3373 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601570917.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:27:01 Heat of formation + Delta-G solvation = -26.209612 kcal Electronic energy + Delta-G solvation = -22920.501538 eV Core-core repulsion = 19485.764405 eV Total energy + Delta-G solvation = -3434.737133 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.38794 -39.14096 -38.09031 -36.78808 -35.94610 -34.72514 -34.23293 -32.06942 -30.61451 -29.54734 -27.18989 -25.36402 -24.34203 -23.80644 -22.29514 -22.08319 -20.37114 -19.12777 -18.47456 -18.22261 -17.32683 -17.01460 -16.71405 -16.36217 -15.98318 -15.79107 -15.35677 -15.33665 -15.16060 -14.99109 -14.62353 -14.33620 -14.02951 -13.96255 -13.57857 -13.43237 -13.05988 -12.89236 -12.74523 -12.54610 -12.46405 -12.32646 -12.26063 -12.17565 -12.14024 -11.92478 -11.71129 -11.39458 -11.35863 -11.11947 -10.58911 -10.18304 -9.53001 -9.00029 -8.18630 -6.28106 1.44310 1.46484 1.54212 1.64253 1.87456 1.90503 2.15632 2.42455 2.93025 3.13914 3.21128 3.27787 3.93541 4.00008 4.09722 4.15116 4.20313 4.29693 4.41592 4.48381 4.52884 4.58554 4.63349 4.76728 4.85008 4.88038 4.90283 4.98344 5.00988 5.06614 5.16094 5.20930 5.26988 5.42571 5.45368 5.50354 5.61722 5.66203 5.99966 6.06611 6.29373 6.62444 6.70039 6.87343 7.01136 7.41575 7.57998 8.91986 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.038698 B = 0.002243 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.385243 B =12482.404804 C =12890.298706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C 0.234 3.766 3 C -0.020 4.020 4 C -0.111 4.111 5 C -0.116 4.116 6 C 0.131 3.869 7 N -0.733 5.733 8 C 0.701 3.299 9 O -0.639 6.639 10 N -0.630 5.630 11 C 0.145 3.855 12 C 0.057 3.943 13 N -0.538 5.538 14 C 0.208 3.792 15 C -0.524 4.524 16 H 0.065 0.935 17 C 0.003 3.997 18 N -0.933 5.933 19 Si 0.967 3.033 20 H -0.270 1.270 21 H -0.285 1.285 22 H -0.267 1.267 23 C 0.036 3.964 24 C 0.127 3.873 25 H 0.141 0.859 26 H 0.138 0.862 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.097 0.903 30 H 0.093 0.907 31 H 0.054 0.946 32 H 0.048 0.952 33 H 0.411 0.589 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.009 0.991 37 H 0.078 0.922 38 H -0.042 1.042 39 H 0.013 0.987 40 H 0.264 0.736 41 H 0.019 0.981 42 H 0.090 0.910 43 H 0.116 0.884 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.612 -5.851 13.687 22.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.197 5.197 2 C -0.082 4.082 3 C -0.059 4.059 4 C -0.151 4.151 5 C -0.154 4.154 6 C 0.008 3.992 7 N -0.392 5.392 8 C 0.402 3.598 9 O -0.521 6.521 10 N -0.367 5.367 11 C 0.021 3.979 12 C -0.072 4.072 13 N -0.263 5.263 14 C 0.082 3.918 15 C -0.562 4.562 16 H 0.083 0.917 17 C -0.195 4.195 18 N -0.574 5.574 19 Si 0.792 3.208 20 H -0.195 1.195 21 H -0.211 1.211 22 H -0.192 1.192 23 C -0.093 4.093 24 C 0.005 3.995 25 H 0.158 0.842 26 H 0.155 0.845 27 H 0.085 0.915 28 H 0.089 0.911 29 H 0.116 0.884 30 H 0.111 0.889 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.250 0.750 34 H 0.096 0.904 35 H 0.101 0.899 36 H 0.027 0.973 37 H 0.096 0.904 38 H -0.024 1.024 39 H 0.031 0.969 40 H 0.072 0.928 41 H 0.038 0.962 42 H 0.109 0.891 43 H 0.133 0.867 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -18.427 -6.409 13.128 23.515 hybrid contribution 1.008 1.075 -0.904 1.729 sum -17.419 -5.334 12.224 21.939 Atomic orbital electron populations 1.81296 1.15821 1.11645 1.10979 1.30147 0.96188 0.90830 0.91015 1.19634 0.78141 1.07801 1.00347 1.21379 0.95002 1.02816 0.95901 1.21698 0.94676 1.04267 0.94782 1.21320 0.77401 1.01127 0.99396 1.45151 1.07752 1.72703 1.13546 1.16055 0.81388 0.78496 0.83818 1.90862 1.68442 1.55101 1.37686 1.47427 1.04109 1.71838 1.13317 1.21553 0.92822 0.97042 0.86460 1.22357 0.94197 0.96261 0.94368 1.61994 1.13349 1.45887 1.05079 1.19375 0.89165 0.87876 0.95367 1.21452 1.10049 1.01216 1.23531 0.91695 1.25872 0.99750 0.95072 0.98836 1.70068 1.31626 1.10446 1.45245 0.85475 0.78176 0.78070 0.79127 1.19496 1.21088 1.19191 1.22553 0.95570 0.96236 0.94933 1.21870 0.93949 0.97413 0.86297 0.84176 0.84456 0.91466 0.91113 0.88400 0.88890 0.92711 0.93357 0.74984 0.90394 0.89908 0.97292 0.90412 1.02408 0.96934 0.92750 0.96241 0.89133 0.86655 0.89566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -10.61 18.54 20.01 0.37 -10.24 16 2 C 0.23 2.59 15.43 89.44 1.38 3.97 16 3 C -0.02 0.01 5.70 28.79 0.16 0.17 16 4 C -0.11 -0.30 5.17 30.59 0.16 -0.14 16 5 C -0.12 -0.30 5.33 30.59 0.16 -0.13 16 6 C 0.13 1.73 5.68 86.38 0.49 2.22 16 7 N -0.73 -12.34 5.47 -478.56 -2.62 -14.96 16 8 C 0.70 19.36 8.31 179.05 1.49 20.84 16 9 O -0.64 -23.22 15.83 -3.96 -0.06 -23.28 16 10 N -0.63 -17.23 3.00 -835.07 -2.51 -19.74 16 11 C 0.15 4.61 6.61 86.50 0.57 5.18 16 12 C 0.06 2.19 5.47 86.54 0.47 2.67 16 13 N -0.54 -21.61 4.62 -898.87 -4.15 -25.76 16 14 C 0.21 10.62 4.72 85.56 0.40 11.03 16 15 C -0.52 -28.73 8.41 25.60 0.22 -28.52 16 16 H 0.06 3.47 7.13 -2.91 -0.02 3.45 16 17 C 0.00 0.16 5.46 84.65 0.46 0.62 16 18 N -0.93 -54.92 13.29 21.45 0.28 -54.64 16 19 Si 0.97 43.36 29.54 68.60 2.03 45.39 16 20 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 21 H -0.29 -12.58 7.11 99.48 0.71 -11.88 16 22 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 23 C 0.04 1.09 5.62 86.38 0.49 1.58 16 24 C 0.13 2.73 6.59 86.35 0.57 3.30 16 25 H 0.14 -0.74 8.14 -2.39 -0.02 -0.76 16 26 H 0.14 -0.64 8.14 -2.39 -0.02 -0.66 16 27 H 0.07 0.33 8.14 -2.39 -0.02 0.31 16 28 H 0.07 0.30 8.14 -2.39 -0.02 0.28 16 29 H 0.10 -0.09 8.14 -2.39 -0.02 -0.11 16 30 H 0.09 0.01 8.14 -2.38 -0.02 -0.01 16 31 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.41 4.15 5.97 -92.71 -0.55 3.60 16 34 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 35 H 0.08 2.74 7.09 -2.39 -0.02 2.72 16 36 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 37 H 0.08 3.23 6.67 -2.39 -0.02 3.21 16 38 H -0.04 -2.36 8.12 -2.39 -0.02 -2.38 16 39 H 0.01 0.68 7.97 -2.39 -0.02 0.66 16 40 H 0.26 14.68 8.31 -92.70 -0.77 13.91 16 41 H 0.02 0.62 8.14 -2.38 -0.02 0.60 16 42 H 0.09 2.56 7.99 -2.38 -0.02 2.54 16 43 H 0.12 1.41 5.63 -2.39 -0.01 1.40 16 44 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -80.12 362.69 0.81 -79.32 By element: Atomic # 1 Polarization: 0.68 SS G_CDS: 0.44 Total: 1.12 kcal Atomic # 6 Polarization: 15.76 SS G_CDS: 7.03 Total: 22.79 kcal Atomic # 7 Polarization: -116.71 SS G_CDS: -8.62 Total: -125.33 kcal Atomic # 8 Polarization: -23.22 SS G_CDS: -0.06 Total: -23.28 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -80.12 0.81 -79.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601570917.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.109 kcal (2) G-P(sol) polarization free energy of solvation -80.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds