Wall clock time and date at job start Tue Mar 31 2020 02:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50695 * 120.00127 * 2 1 4 4 H 1.08998 * 110.67596 * 357.03608 * 3 2 1 5 5 O 1.44382 * 110.61751 * 234.07148 * 3 2 1 6 6 C 1.43744 * 106.97629 * 201.43710 * 5 3 2 7 7 C 1.54099 * 107.29203 * 26.51486 * 6 5 3 8 8 C 1.54815 * 104.18827 * 357.96806 * 7 6 5 9 9 H 1.09003 * 110.90331 * 97.35358 * 8 7 6 10 10 C 1.50699 * 110.90635 * 220.91972 * 8 7 6 11 11 O 1.21284 * 119.99455 * 118.54844 * 10 8 7 12 12 N 1.34776 * 120.00454 * 298.55003 * 10 8 7 13 13 C 1.47075 * 120.88391 * 180.02562 * 12 10 8 14 14 C 1.53238 * 108.68495 * 128.90910 * 13 12 10 15 15 N 1.46898 * 109.33677 * 53.73120 * 14 13 12 16 16 C 1.46900 * 110.99875 * 172.74395 * 15 14 13 17 17 C 1.50695 * 109.47124 * 64.58361 * 16 15 14 18 18 H 1.08005 * 120.00245 * 4.83529 * 17 16 15 19 19 C 1.37880 * 120.00133 * 184.83588 * 17 16 15 20 20 N 1.31513 * 119.99923 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99918 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47271 * 0.02562 * 21 19 17 23 23 H 1.48507 * 109.46753 * 120.00270 * 21 19 17 24 24 H 1.48497 * 109.47527 * 240.00176 * 21 19 17 25 25 C 1.46894 * 111.27507 * 296.89388 * 15 14 13 26 26 C 1.47145 * 120.92033 * 359.75001 * 12 10 8 27 27 H 1.07998 * 120.00260 * 180.02562 * 1 2 3 28 28 H 1.08001 * 119.99691 * 359.97438 * 1 2 3 29 29 H 1.08001 * 119.99584 * 179.97438 * 2 1 3 30 30 H 1.09000 * 109.87509 * 267.09115 * 6 5 3 31 31 H 1.09000 * 109.87850 * 145.93729 * 6 5 3 32 32 H 1.08998 * 110.48676 * 239.29263 * 7 6 5 33 33 H 1.08993 * 110.48730 * 116.64395 * 7 6 5 34 34 H 1.09003 * 109.62936 * 9.10023 * 13 12 10 35 35 H 1.08998 * 109.62527 * 248.72062 * 13 12 10 36 36 H 1.09000 * 109.49313 * 173.69135 * 14 13 12 37 37 H 1.08993 * 109.49379 * 293.77478 * 14 13 12 38 38 H 1.09002 * 109.47131 * 184.58573 * 16 15 14 39 39 H 1.09003 * 109.47433 * 304.58354 * 16 15 14 40 40 H 0.97001 * 119.99404 * 179.97438 * 20 19 17 41 41 H 1.08998 * 109.49961 * 183.06101 * 25 15 14 42 42 H 1.08996 * 109.49282 * 303.14899 * 25 15 14 43 43 H 1.09007 * 109.45980 * 111.38321 * 26 12 10 44 44 H 1.08999 * 109.80676 * 350.99566 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 1 1.3740 2.1476 -0.0527 5 8 3.0045 1.3488 -1.0943 6 6 4.0002 2.3276 -0.7526 7 6 4.0583 2.4045 0.7854 8 6 2.9646 1.4150 1.2563 9 1 3.3985 0.4479 1.5103 10 6 2.1949 1.9794 2.4225 11 8 1.0026 2.1777 2.3231 12 7 2.8315 2.2637 3.5759 13 6 2.0993 2.8146 4.7264 14 6 2.4235 1.9713 5.9641 15 7 3.8807 1.8965 6.1336 16 6 4.2303 1.2431 7.4020 17 6 3.7677 -0.1907 7.3727 18 1 3.3349 -0.6003 6.4719 19 6 3.8968 -0.9799 8.4959 20 7 4.4233 -0.4811 9.5930 21 14 3.3227 -2.7571 8.4598 22 1 2.7712 -3.0720 7.1173 23 1 4.4712 -3.6542 8.7455 24 1 2.2698 -2.9583 9.4875 25 6 4.5151 1.2143 4.9978 26 6 4.2764 2.0261 3.7206 27 1 -0.5400 -0.9353 0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8500 -0.9354 0.0004 30 1 3.7213 3.2985 -1.1620 31 1 4.9701 2.0223 -1.1453 32 1 3.8309 3.4147 1.1257 33 1 5.0376 2.0906 1.1463 34 1 1.0278 2.7790 4.5295 35 1 2.4063 3.8466 4.8957 36 1 1.9780 2.4326 6.8454 37 1 2.0203 0.9669 5.8357 38 1 5.3111 1.2735 7.5406 39 1 3.7436 1.7652 8.2259 40 1 4.5138 -1.0363 10.3833 41 1 5.5865 1.1267 5.1782 42 1 4.0827 0.2204 4.8828 43 1 4.7963 2.9815 3.7918 44 1 4.6474 1.4708 2.8591 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602200131.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:58:53 Heat of formation + Delta-G solvation = -67.780592 kcal Electronic energy + Delta-G solvation = -24715.869482 eV Core-core repulsion = 21247.036945 eV Total energy + Delta-G solvation = -3468.832537 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.78876 -40.05439 -38.81025 -36.10879 -34.81632 -34.43973 -33.47955 -31.85191 -30.01990 -29.39273 -27.23455 -25.18775 -24.49968 -23.76183 -23.00646 -21.70123 -21.05394 -20.06900 -18.63390 -18.06643 -17.53114 -17.26870 -16.77770 -16.68453 -16.15097 -16.02905 -15.69149 -15.51144 -15.14260 -14.76026 -14.61524 -14.43415 -14.32527 -13.73908 -13.60680 -13.46791 -13.03046 -12.98523 -12.80152 -12.56082 -12.47699 -12.37765 -12.20967 -12.05621 -11.94606 -11.86884 -11.80671 -11.59986 -10.86137 -10.71242 -10.63508 -10.38558 -9.77275 -9.06497 -8.19163 -6.38071 1.19992 1.32183 1.35048 1.44936 1.51620 1.90304 2.33785 2.92009 3.06527 3.28959 3.38128 3.53718 3.62364 3.89604 4.03325 4.08070 4.12831 4.22967 4.25711 4.29975 4.35479 4.39440 4.51640 4.61752 4.71539 4.75595 4.83547 4.86039 4.90875 4.98939 5.03772 5.05337 5.16962 5.20921 5.31203 5.45410 5.59705 5.71317 5.72049 5.89865 5.97952 6.15156 6.40031 6.44713 6.82409 7.06466 7.33739 8.83357 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.018942 B = 0.004059 C = 0.003789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.819117 B = 6896.832497 C = 7387.969207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.171 4.171 3 C 0.129 3.871 4 H 0.070 0.930 5 O -0.385 6.385 6 C 0.042 3.958 7 C -0.141 4.141 8 C -0.134 4.134 9 H 0.121 0.879 10 C 0.524 3.476 11 O -0.576 6.576 12 N -0.606 5.606 13 C 0.126 3.874 14 C 0.056 3.944 15 N -0.534 5.534 16 C 0.200 3.800 17 C -0.556 4.556 18 H 0.051 0.949 19 C 0.016 3.984 20 N -0.922 5.922 21 Si 0.951 3.049 22 H -0.273 1.273 23 H -0.275 1.275 24 H -0.280 1.280 25 C 0.045 3.955 26 C 0.116 3.884 27 H 0.118 0.882 28 H 0.094 0.906 29 H 0.122 0.878 30 H 0.068 0.932 31 H 0.111 0.889 32 H 0.084 0.916 33 H 0.116 0.884 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.073 0.927 37 H 0.012 0.988 38 H 0.012 0.988 39 H 0.008 0.992 40 H 0.266 0.734 41 H 0.084 0.916 42 H 0.018 0.982 43 H 0.095 0.905 44 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.289 5.563 -19.428 20.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.189 4.189 3 C 0.072 3.928 4 H 0.087 0.913 5 O -0.305 6.305 6 C -0.034 4.034 7 C -0.179 4.179 8 C -0.156 4.156 9 H 0.139 0.861 10 C 0.313 3.687 11 O -0.456 6.456 12 N -0.338 5.338 13 C 0.003 3.997 14 C -0.073 4.073 15 N -0.258 5.258 16 C 0.073 3.927 17 C -0.595 4.595 18 H 0.069 0.931 19 C -0.183 4.183 20 N -0.562 5.562 21 Si 0.777 3.223 22 H -0.197 1.197 23 H -0.200 1.200 24 H -0.205 1.205 25 C -0.084 4.084 26 C -0.006 4.006 27 H 0.136 0.864 28 H 0.112 0.888 29 H 0.140 0.860 30 H 0.086 0.914 31 H 0.129 0.871 32 H 0.102 0.898 33 H 0.135 0.865 34 H 0.101 0.899 35 H 0.105 0.895 36 H 0.091 0.909 37 H 0.031 0.969 38 H 0.031 0.969 39 H 0.026 0.974 40 H 0.075 0.925 41 H 0.103 0.897 42 H 0.036 0.964 43 H 0.113 0.887 44 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -0.097 6.008 -19.475 20.381 hybrid contribution -0.689 -1.819 1.075 2.222 sum -0.786 4.189 -18.401 18.888 Atomic orbital electron populations 1.24031 0.95816 1.02726 0.97015 1.22752 0.96141 0.97294 1.02684 1.21852 0.90452 0.96557 0.83987 0.91256 1.88911 1.39076 1.61293 1.41239 1.23382 0.93200 0.92756 0.94041 1.23123 0.99249 0.99376 0.96122 1.22852 0.97448 1.02152 0.93107 0.86143 1.20615 0.87184 0.77042 0.83850 1.90656 1.16439 1.55239 1.83249 1.48247 1.10405 1.62804 1.12333 1.21639 0.97132 0.97416 0.83503 1.22190 0.89664 0.97776 0.97714 1.62432 1.08247 1.51906 1.03194 1.19441 0.95188 0.91163 0.86900 1.21971 1.41148 0.98567 0.97806 0.93109 1.25722 0.95066 1.02421 0.95133 1.70048 1.45343 1.37950 1.02873 0.85611 0.78237 0.80445 0.77993 1.19721 1.20017 1.20545 1.22350 1.00024 0.95166 0.90830 1.22193 0.79205 1.01578 0.97590 0.86387 0.88786 0.85993 0.91369 0.87141 0.89771 0.86526 0.89939 0.89509 0.90878 0.96945 0.96947 0.97356 0.92543 0.89724 0.96395 0.88681 0.86847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.59 14.33 67.77 0.97 -2.62 16 2 C -0.17 -4.01 9.24 25.64 0.24 -3.77 16 3 C 0.13 3.04 2.73 30.53 0.08 3.12 16 4 H 0.07 1.83 7.24 -2.39 -0.02 1.82 16 5 O -0.39 -8.55 11.21 -148.98 -1.67 -10.22 16 6 C 0.04 0.62 7.70 72.35 0.56 1.18 16 7 C -0.14 -2.03 5.24 31.59 0.17 -1.87 16 8 C -0.13 -2.86 1.97 -10.24 -0.02 -2.88 16 9 H 0.12 2.42 7.70 -2.39 -0.02 2.40 16 10 C 0.52 14.73 6.99 87.66 0.61 15.34 16 11 O -0.58 -19.94 15.25 -3.04 -0.05 -19.98 16 12 N -0.61 -16.76 3.02 -817.83 -2.47 -19.23 16 13 C 0.13 3.84 6.59 86.35 0.57 4.41 16 14 C 0.06 2.11 5.25 86.38 0.45 2.56 16 15 N -0.53 -21.18 4.83 -899.93 -4.35 -25.52 16 16 C 0.20 10.00 5.11 85.56 0.44 10.43 16 17 C -0.56 -29.93 7.76 25.60 0.20 -29.73 16 18 H 0.05 2.75 5.88 -2.91 -0.02 2.73 16 19 C 0.02 0.91 5.46 84.66 0.46 1.37 16 20 N -0.92 -53.56 13.29 21.45 0.28 -53.28 16 21 Si 0.95 43.43 29.54 68.60 2.03 45.46 16 22 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 23 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 24 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 25 C 0.05 1.52 5.16 86.37 0.45 1.97 16 26 C 0.12 2.72 5.76 86.33 0.50 3.22 16 27 H 0.12 2.20 8.06 -2.91 -0.02 2.17 16 28 H 0.09 2.23 7.87 -2.91 -0.02 2.20 16 29 H 0.12 2.59 8.06 -2.91 -0.02 2.57 16 30 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.08 1.23 7.85 -2.39 -0.02 1.21 16 33 H 0.12 1.10 6.93 -2.39 -0.02 1.09 16 34 H 0.08 2.62 7.06 -2.39 -0.02 2.60 16 35 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 36 H 0.07 2.79 8.06 -2.39 -0.02 2.77 16 37 H 0.01 0.53 7.09 -2.39 -0.02 0.52 16 38 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.01 0.45 8.07 -2.39 -0.02 0.44 16 40 H 0.27 14.52 8.31 -92.71 -0.77 13.75 16 41 H 0.08 2.74 8.11 -2.39 -0.02 2.72 16 42 H 0.02 0.69 6.63 -2.39 -0.02 0.68 16 43 H 0.10 1.90 8.14 -2.38 -0.02 1.89 16 44 H 0.11 1.95 4.65 -2.39 -0.01 1.94 16 Total: -1.00 -66.84 346.02 0.43 -66.41 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: 0.98 Total: 13.63 kcal Atomic # 6 Polarization: -2.94 SS G_CDS: 5.67 Total: 2.73 kcal Atomic # 7 Polarization: -91.49 SS G_CDS: -6.53 Total: -98.03 kcal Atomic # 8 Polarization: -28.49 SS G_CDS: -1.72 Total: -30.20 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -66.84 0.43 -66.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602200131.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.366 kcal (2) G-P(sol) polarization free energy of solvation -66.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds