Wall clock time and date at job start Tue Mar 31 2020 03:41:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46898 * 110.99922 * 2 1 4 4 C 1.46899 * 110.99717 * 123.94707 * 2 1 3 5 5 C 1.53003 * 109.46882 * 169.99907 * 4 2 1 6 6 C 1.53007 * 109.47114 * 180.02562 * 5 4 2 7 7 N 1.46497 * 109.47304 * 180.02562 * 6 5 4 8 8 C 1.46498 * 119.99805 * 89.99999 * 7 6 5 9 9 C 1.50699 * 109.47103 * 95.43680 * 8 7 6 10 10 H 1.07991 * 120.00041 * 359.97438 * 9 8 7 11 11 C 1.37876 * 119.99862 * 179.97438 * 9 8 7 12 12 N 1.31514 * 120.00155 * 179.97438 * 11 9 8 13 13 Si 1.86799 * 120.00059 * 359.97438 * 11 9 8 14 14 H 1.48502 * 109.47317 * 89.99967 * 13 11 9 15 15 H 1.48508 * 109.47105 * 210.00104 * 13 11 9 16 16 H 1.48504 * 109.47233 * 329.99684 * 13 11 9 17 17 C 1.34771 * 119.99885 * 270.00315 * 7 6 5 18 18 O 1.21578 * 120.00360 * 5.19749 * 17 7 6 19 19 C 1.47717 * 120.00125 * 185.20505 * 17 7 6 20 20 C 1.41493 * 126.51859 * 185.53580 * 19 17 7 21 21 C 1.35370 * 105.50295 * 179.84102 * 20 19 17 22 22 N 1.35035 * 107.22334 * 0.41202 * 21 20 19 23 23 C 1.46501 * 124.88212 * 179.72892 * 22 21 20 24 24 N 1.28463 * 110.23493 * 359.72438 * 22 21 20 25 25 H 1.09000 * 109.47375 * 296.05294 * 1 2 3 26 26 H 1.09004 * 109.46794 * 56.04887 * 1 2 3 27 27 H 1.08998 * 109.47500 * 176.04838 * 1 2 3 28 28 H 1.09008 * 109.46945 * 183.95426 * 3 2 1 29 29 H 1.09006 * 109.46855 * 303.95007 * 3 2 1 30 30 H 1.08997 * 109.47568 * 63.95134 * 3 2 1 31 31 H 1.09007 * 109.46903 * 50.00178 * 4 2 1 32 32 H 1.08998 * 109.47431 * 290.00191 * 4 2 1 33 33 H 1.08994 * 109.47299 * 60.00546 * 5 4 2 34 34 H 1.08998 * 109.47320 * 300.00353 * 5 4 2 35 35 H 1.09007 * 109.46952 * 60.00098 * 6 5 4 36 36 H 1.09006 * 109.47069 * 300.00550 * 6 5 4 37 37 H 1.09002 * 109.46680 * 215.43351 * 8 7 6 38 38 H 1.08996 * 109.47377 * 335.42973 * 8 7 6 39 39 H 0.96998 * 120.00203 * 179.97438 * 12 11 9 40 40 H 1.08000 * 127.25072 * 359.97438 * 20 19 17 41 41 H 1.07999 * 126.38776 * 180.13640 * 21 20 19 42 42 H 1.09008 * 109.47175 * 269.97604 * 23 22 21 43 43 H 1.09003 * 109.47349 * 29.96966 * 23 22 21 44 44 H 1.09003 * 109.47110 * 149.97580 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7659 1.1377 5 6 3.5044 -0.9553 0.9705 6 6 4.0526 -1.7535 2.1551 7 7 5.4976 -1.9344 1.9953 8 6 6.4252 -0.9445 2.5484 9 6 6.8916 -1.3978 3.9078 10 1 6.5326 -2.3296 4.3189 11 6 7.7767 -0.6227 4.6268 12 7 8.1834 -1.0179 5.8133 13 14 8.3982 0.9889 3.9154 14 1 7.4895 2.0917 4.3198 15 1 9.7655 1.2612 4.4271 16 1 8.4338 0.8950 2.4338 17 6 5.9734 -3.0113 1.3395 18 8 5.2047 -3.7827 0.7991 19 6 7.4291 -3.2546 1.2773 20 6 8.0822 -4.2711 0.5410 21 6 9.4031 -4.1022 0.7842 22 7 9.5240 -3.0518 1.6241 23 6 10.7930 -2.5363 2.1440 24 7 8.3662 -2.5693 1.9016 25 1 -0.3634 0.4513 0.9232 26 1 -0.3633 0.5740 -0.8525 27 1 -0.3634 -1.0252 -0.0708 28 1 3.0828 1.3432 -0.0709 29 1 1.5898 1.9163 -0.8525 30 1 1.7044 1.8724 0.9232 31 1 1.5088 -1.7406 1.1758 32 1 1.7974 -0.2246 2.0628 33 1 3.9909 0.0193 0.9324 34 1 3.7024 -1.4965 0.0453 35 1 3.5660 -2.7282 2.1928 36 1 3.8546 -1.2126 3.0805 37 1 7.2842 -0.8414 1.8853 38 1 5.9192 0.0165 2.6396 39 1 8.8063 -0.4728 6.3190 40 1 7.6236 -5.0222 -0.0851 41 1 10.2096 -4.6993 0.3849 42 1 11.0358 -3.0434 3.0779 43 1 11.5840 -2.7171 1.4162 44 1 10.7033 -1.4652 2.3248 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609167460.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:41:46 Heat of formation + Delta-G solvation = 68.107483 kcal Electronic energy + Delta-G solvation = -24465.573179 eV Core-core repulsion = 21034.925942 eV Total energy + Delta-G solvation = -3430.647237 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.96451 -38.85684 -37.53086 -35.15871 -33.07497 -32.56939 -31.49275 -30.03001 -27.88237 -27.58735 -27.26098 -25.66260 -23.11602 -22.51041 -21.25970 -20.78581 -20.55887 -18.40678 -16.89073 -16.71566 -16.09648 -15.62866 -15.59930 -15.37739 -14.95414 -14.56965 -14.24915 -13.85950 -13.70610 -13.43064 -13.07109 -12.62265 -12.49665 -12.39887 -12.34175 -12.16786 -12.08300 -11.84598 -11.76917 -11.59338 -11.29858 -11.13961 -10.84853 -10.61508 -10.23674 -10.10594 -9.72063 -9.46357 -9.24193 -8.68206 -8.47651 -8.45264 -8.34678 -7.63280 -6.04032 -3.97611 2.41286 2.68244 3.05447 3.22162 3.30846 3.34909 3.81658 4.08564 4.26240 4.40629 4.86599 5.08406 5.14274 5.19737 5.25670 5.30116 5.35855 5.39367 5.44846 5.54546 5.63721 5.68034 5.70746 5.78051 5.78712 5.85248 5.93989 6.00040 6.15628 6.20931 6.27900 6.48572 6.58829 6.64712 6.88494 7.03619 7.04729 7.06759 7.33002 7.54472 7.65901 8.23529 8.52820 8.65354 9.00566 9.07335 9.57962 11.09885 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.013757 B = 0.005235 C = 0.004199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.804751 B = 5347.296969 C = 6667.431291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.548 5.548 3 C 0.021 3.979 4 C 0.059 3.941 5 C -0.130 4.130 6 C 0.123 3.877 7 N -0.581 5.581 8 C 0.209 3.791 9 C -0.495 4.495 10 H 0.072 0.928 11 C 0.078 3.922 12 N -0.903 5.903 13 Si 0.863 3.137 14 H -0.278 1.278 15 H -0.287 1.287 16 H -0.264 1.264 17 C 0.605 3.395 18 O -0.565 6.565 19 C -0.026 4.026 20 C -0.186 4.186 21 C -0.042 4.042 22 N -0.293 5.293 23 C 0.092 3.908 24 N -0.183 5.183 25 H 0.023 0.977 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.063 0.937 30 H 0.025 0.975 31 H 0.076 0.924 32 H 0.035 0.965 33 H 0.062 0.938 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.051 0.949 38 H 0.022 0.978 39 H 0.261 0.739 40 H 0.153 0.847 41 H 0.171 0.829 42 H 0.083 0.917 43 H 0.086 0.914 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.268 1.088 -10.229 10.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.272 5.272 3 C -0.127 4.127 4 C -0.070 4.070 5 C -0.169 4.169 6 C -0.001 4.001 7 N -0.310 5.310 8 C 0.087 3.913 9 C -0.535 4.535 10 H 0.090 0.910 11 C -0.122 4.122 12 N -0.543 5.543 13 Si 0.691 3.309 14 H -0.204 1.204 15 H -0.213 1.213 16 H -0.189 1.189 17 C 0.393 3.607 18 O -0.444 6.444 19 C -0.186 4.186 20 C -0.215 4.215 21 C -0.183 4.183 22 N -0.082 5.082 23 C -0.049 4.049 24 N -0.019 5.019 25 H 0.042 0.958 26 H 0.083 0.917 27 H 0.086 0.914 28 H 0.091 0.909 29 H 0.082 0.918 30 H 0.043 0.957 31 H 0.094 0.906 32 H 0.053 0.947 33 H 0.080 0.920 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.068 0.932 38 H 0.040 0.960 39 H 0.070 0.930 40 H 0.171 0.829 41 H 0.188 0.812 42 H 0.102 0.898 43 H 0.105 0.895 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.104 1.479 -10.006 10.331 hybrid contribution 0.278 0.666 0.204 0.750 sum -1.826 2.145 -9.802 10.199 Atomic orbital electron populations 1.22366 0.87655 1.02148 1.00154 1.61972 1.07503 1.13941 1.43799 1.22440 1.01479 0.88726 1.00085 1.22086 0.95975 0.98067 0.90841 1.21969 0.93722 1.00923 1.00283 1.21263 0.80831 1.00571 0.97387 1.47757 1.06534 1.23367 1.53313 1.20001 0.88654 0.86719 0.95894 1.21163 1.25547 1.07912 0.98828 0.91013 1.24686 0.95760 0.97288 0.94512 1.69908 1.33876 1.38453 1.12048 0.87061 0.78655 0.84986 0.80240 1.20433 1.21287 1.18852 1.16912 0.85129 0.80659 0.78041 1.90681 1.57666 1.47828 1.48189 1.21870 0.94079 0.99351 1.03264 1.21640 0.92026 1.02276 1.05548 1.22693 0.98693 0.96078 1.00856 1.45722 1.06761 1.22651 1.33112 1.22027 0.80387 1.02209 1.00237 1.74555 0.89449 1.21028 1.16836 0.95840 0.91662 0.91378 0.90851 0.91776 0.95679 0.90580 0.94658 0.91953 0.90728 0.90647 0.90387 0.93171 0.96043 0.92952 0.82919 0.81154 0.89828 0.89491 0.88913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.57 60.07 0.57 0.84 16 2 N -0.55 -7.10 5.02 -251.25 -1.26 -8.37 16 3 C 0.02 0.25 9.32 60.06 0.56 0.81 16 4 C 0.06 0.80 4.96 -3.82 -0.02 0.78 16 5 C -0.13 -2.10 5.46 -26.73 -0.15 -2.24 16 6 C 0.12 2.30 5.34 -4.04 -0.02 2.28 16 7 N -0.58 -12.81 2.47 -176.22 -0.44 -13.25 16 8 C 0.21 4.93 3.82 -5.20 -0.02 4.91 16 9 C -0.50 -13.46 8.27 -34.44 -0.28 -13.74 16 10 H 0.07 2.22 8.06 -52.49 -0.42 1.80 16 11 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 12 N -0.90 -26.53 13.96 55.43 0.77 -25.75 16 13 Si 0.86 20.34 27.47 -169.99 -4.67 15.67 16 14 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 15 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 16 H -0.26 -5.99 6.54 56.52 0.37 -5.62 16 17 C 0.61 13.90 7.62 -12.39 -0.09 13.80 16 18 O -0.56 -13.43 16.56 5.30 0.09 -13.34 16 19 C -0.03 -0.56 6.71 -82.77 -0.56 -1.12 16 20 C -0.19 -3.38 10.81 -39.37 -0.43 -3.80 16 21 C -0.04 -0.64 11.46 -17.17 -0.20 -0.84 16 22 N -0.29 -5.19 3.70 -68.12 -0.25 -5.45 16 23 C 0.09 1.23 11.31 59.85 0.68 1.90 16 24 N -0.18 -4.03 7.54 33.42 0.25 -3.78 16 25 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 26 H 0.06 0.60 8.12 -51.93 -0.42 0.17 16 27 H 0.07 0.67 8.12 -51.93 -0.42 0.25 16 28 H 0.07 0.91 6.47 -51.92 -0.34 0.58 16 29 H 0.06 0.65 8.12 -51.93 -0.42 0.23 16 30 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.08 1.00 8.06 -51.92 -0.42 0.59 16 32 H 0.04 0.47 8.12 -51.93 -0.42 0.04 16 33 H 0.06 1.01 6.55 -51.93 -0.34 0.67 16 34 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 35 H 0.08 1.41 7.50 -51.92 -0.39 1.02 16 36 H 0.08 1.41 8.07 -51.93 -0.42 1.00 16 37 H 0.05 1.22 4.99 -51.93 -0.26 0.97 16 38 H 0.02 0.49 7.46 -51.93 -0.39 0.11 16 39 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 40 H 0.15 2.48 8.06 -52.49 -0.42 2.06 16 41 H 0.17 1.79 8.06 -52.49 -0.42 1.37 16 42 H 0.08 1.08 8.14 -51.92 -0.42 0.66 16 43 H 0.09 0.76 8.13 -51.93 -0.42 0.34 16 44 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 360.52 15.07 5.43 5.43 Total: -1.00 -33.69 360.52 -7.33 -41.02 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -7.21 Total: 2.18 kcal Atomic # 6 Polarization: 5.67 SS G_CDS: -0.05 Total: 5.62 kcal Atomic # 7 Polarization: -55.66 SS G_CDS: -0.92 Total: -56.59 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: 0.09 Total: -13.34 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -4.67 Total: 15.67 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.69 -7.33 -41.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609167460.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.130 kcal (2) G-P(sol) polarization free energy of solvation -33.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds