Wall clock time and date at job start Tue Mar 31 2020 03:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46898 * 110.99922 * 2 1 4 4 C 1.46899 * 110.99717 * 123.94707 * 2 1 3 5 5 C 1.53003 * 109.46882 * 169.99907 * 4 2 1 6 6 C 1.53007 * 109.47114 * 180.02562 * 5 4 2 7 7 N 1.46497 * 109.47304 * 180.02562 * 6 5 4 8 8 C 1.46498 * 119.99805 * 89.99999 * 7 6 5 9 9 C 1.50699 * 109.47103 * 95.43680 * 8 7 6 10 10 H 1.07991 * 120.00041 * 359.97438 * 9 8 7 11 11 C 1.37876 * 119.99862 * 179.97438 * 9 8 7 12 12 N 1.31514 * 120.00155 * 179.97438 * 11 9 8 13 13 Si 1.86799 * 120.00059 * 359.97438 * 11 9 8 14 14 H 1.48502 * 109.47317 * 89.99967 * 13 11 9 15 15 H 1.48508 * 109.47105 * 210.00104 * 13 11 9 16 16 H 1.48504 * 109.47233 * 329.99684 * 13 11 9 17 17 C 1.34771 * 119.99885 * 270.00315 * 7 6 5 18 18 O 1.21578 * 120.00360 * 5.19749 * 17 7 6 19 19 C 1.47717 * 120.00125 * 185.20505 * 17 7 6 20 20 C 1.41493 * 126.51859 * 185.53580 * 19 17 7 21 21 C 1.35370 * 105.50295 * 179.84102 * 20 19 17 22 22 N 1.35035 * 107.22334 * 0.41202 * 21 20 19 23 23 C 1.46501 * 124.88212 * 179.72892 * 22 21 20 24 24 N 1.28463 * 110.23493 * 359.72438 * 22 21 20 25 25 H 1.09000 * 109.47375 * 296.05294 * 1 2 3 26 26 H 1.09004 * 109.46794 * 56.04887 * 1 2 3 27 27 H 1.08998 * 109.47500 * 176.04838 * 1 2 3 28 28 H 1.09008 * 109.46945 * 183.95426 * 3 2 1 29 29 H 1.09006 * 109.46855 * 303.95007 * 3 2 1 30 30 H 1.08997 * 109.47568 * 63.95134 * 3 2 1 31 31 H 1.09007 * 109.46903 * 50.00178 * 4 2 1 32 32 H 1.08998 * 109.47431 * 290.00191 * 4 2 1 33 33 H 1.08994 * 109.47299 * 60.00546 * 5 4 2 34 34 H 1.08998 * 109.47320 * 300.00353 * 5 4 2 35 35 H 1.09007 * 109.46952 * 60.00098 * 6 5 4 36 36 H 1.09006 * 109.47069 * 300.00550 * 6 5 4 37 37 H 1.09002 * 109.46680 * 215.43351 * 8 7 6 38 38 H 1.08996 * 109.47377 * 335.42973 * 8 7 6 39 39 H 0.96998 * 120.00203 * 179.97438 * 12 11 9 40 40 H 1.08000 * 127.25072 * 359.97438 * 20 19 17 41 41 H 1.07999 * 126.38776 * 180.13640 * 21 20 19 42 42 H 1.09008 * 109.47175 * 269.97604 * 23 22 21 43 43 H 1.09003 * 109.47349 * 29.96966 * 23 22 21 44 44 H 1.09003 * 109.47110 * 149.97580 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7659 1.1377 5 6 3.5044 -0.9553 0.9705 6 6 4.0526 -1.7535 2.1551 7 7 5.4976 -1.9344 1.9953 8 6 6.4252 -0.9445 2.5484 9 6 6.8916 -1.3978 3.9078 10 1 6.5326 -2.3296 4.3189 11 6 7.7767 -0.6227 4.6268 12 7 8.1834 -1.0179 5.8133 13 14 8.3982 0.9889 3.9154 14 1 7.4895 2.0917 4.3198 15 1 9.7655 1.2612 4.4271 16 1 8.4338 0.8950 2.4338 17 6 5.9734 -3.0113 1.3395 18 8 5.2047 -3.7827 0.7991 19 6 7.4291 -3.2546 1.2773 20 6 8.0822 -4.2711 0.5410 21 6 9.4031 -4.1022 0.7842 22 7 9.5240 -3.0518 1.6241 23 6 10.7930 -2.5363 2.1440 24 7 8.3662 -2.5693 1.9016 25 1 -0.3634 0.4513 0.9232 26 1 -0.3633 0.5740 -0.8525 27 1 -0.3634 -1.0252 -0.0708 28 1 3.0828 1.3432 -0.0709 29 1 1.5898 1.9163 -0.8525 30 1 1.7044 1.8724 0.9232 31 1 1.5088 -1.7406 1.1758 32 1 1.7974 -0.2246 2.0628 33 1 3.9909 0.0193 0.9324 34 1 3.7024 -1.4965 0.0453 35 1 3.5660 -2.7282 2.1928 36 1 3.8546 -1.2126 3.0805 37 1 7.2842 -0.8414 1.8853 38 1 5.9192 0.0165 2.6396 39 1 8.8063 -0.4728 6.3190 40 1 7.6236 -5.0222 -0.0851 41 1 10.2096 -4.6993 0.3849 42 1 11.0358 -3.0434 3.0779 43 1 11.5840 -2.7171 1.4162 44 1 10.7033 -1.4652 2.3248 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609167460.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:41:45 Heat of formation + Delta-G solvation = 44.511295 kcal Electronic energy + Delta-G solvation = -24466.596387 eV Core-core repulsion = 21034.925942 eV Total energy + Delta-G solvation = -3431.670444 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.37620 -40.54369 -38.62240 -36.89710 -34.69399 -34.24147 -32.99397 -31.41826 -29.75130 -28.61874 -28.46552 -26.93716 -24.65895 -24.19727 -22.66678 -22.13193 -21.76780 -19.99920 -18.98369 -18.21689 -17.62674 -17.03380 -16.99888 -16.50743 -16.29537 -16.01298 -15.73678 -15.28521 -15.10625 -14.83374 -14.62549 -14.25607 -14.00734 -13.68245 -13.59819 -13.36163 -13.28443 -13.19576 -13.16382 -12.69219 -12.62168 -12.49024 -12.38913 -12.31022 -11.97084 -11.65630 -11.51478 -11.25579 -10.97900 -10.67724 -10.01230 -9.88221 -9.40524 -9.30859 -8.17657 -6.16632 0.80953 1.35355 1.37861 1.39105 1.50244 1.81143 2.30176 2.40813 2.54944 3.05483 3.18396 3.57636 3.88444 4.00620 4.12960 4.14836 4.22945 4.37539 4.40845 4.44552 4.50469 4.57767 4.59187 4.65359 4.70518 4.73889 4.77832 4.79190 4.89717 4.91434 5.00343 5.01541 5.02540 5.15045 5.28042 5.51559 5.57440 5.78787 6.05204 6.12164 6.13793 6.26733 6.58744 6.77495 7.10574 7.37136 7.44553 9.00071 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.013757 B = 0.005235 C = 0.004199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.804751 B = 5347.296969 C = 6667.431291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.565 5.565 3 C 0.021 3.979 4 C 0.065 3.935 5 C -0.113 4.113 6 C 0.120 3.880 7 N -0.587 5.587 8 C 0.223 3.777 9 C -0.489 4.489 10 H 0.018 0.982 11 C 0.031 3.969 12 N -0.949 5.949 13 Si 0.929 3.071 14 H -0.271 1.271 15 H -0.279 1.279 16 H -0.250 1.250 17 C 0.595 3.405 18 O -0.584 6.584 19 C -0.063 4.063 20 C -0.207 4.207 21 C -0.009 4.009 22 N -0.295 5.295 23 C 0.082 3.918 24 N -0.229 5.229 25 H 0.029 0.971 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.061 0.939 29 H 0.080 0.920 30 H 0.029 0.971 31 H 0.078 0.922 32 H 0.042 0.958 33 H 0.062 0.938 34 H 0.055 0.945 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.051 0.949 38 H 0.034 0.966 39 H 0.263 0.737 40 H 0.165 0.835 41 H 0.229 0.771 42 H 0.083 0.917 43 H 0.142 0.858 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.157 2.123 -11.949 12.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.289 5.289 3 C -0.127 4.127 4 C -0.063 4.063 5 C -0.152 4.152 6 C -0.003 4.003 7 N -0.316 5.316 8 C 0.101 3.899 9 C -0.528 4.528 10 H 0.036 0.964 11 C -0.166 4.166 12 N -0.591 5.591 13 Si 0.753 3.247 14 H -0.196 1.196 15 H -0.204 1.204 16 H -0.174 1.174 17 C 0.383 3.617 18 O -0.465 6.465 19 C -0.221 4.221 20 C -0.236 4.236 21 C -0.150 4.150 22 N -0.085 5.085 23 C -0.057 4.057 24 N -0.066 5.066 25 H 0.048 0.952 26 H 0.098 0.902 27 H 0.089 0.911 28 H 0.080 0.920 29 H 0.099 0.901 30 H 0.048 0.952 31 H 0.097 0.903 32 H 0.060 0.940 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.099 0.901 37 H 0.068 0.932 38 H 0.052 0.948 39 H 0.072 0.928 40 H 0.182 0.818 41 H 0.246 0.754 42 H 0.102 0.898 43 H 0.160 0.840 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.019 2.527 -11.731 12.043 hybrid contribution -0.024 0.221 0.762 0.794 sum -1.043 2.748 -10.969 11.356 Atomic orbital electron populations 1.22423 0.85931 1.02792 1.01125 1.61952 1.09161 1.14554 1.43262 1.22463 1.00850 0.88345 1.01084 1.21960 0.93996 0.98689 0.91670 1.21758 0.95627 0.99893 0.97885 1.21422 0.79340 1.00804 0.98754 1.47847 1.07629 1.23089 1.52993 1.19741 0.89089 0.87229 0.93855 1.21090 1.25571 1.05795 1.00301 0.96405 1.25408 0.95663 1.00965 0.94540 1.70059 1.34974 1.40331 1.13752 0.86006 0.78371 0.80129 0.80190 1.19649 1.20408 1.17351 1.17300 0.86096 0.80500 0.77790 1.90637 1.58426 1.48301 1.49131 1.21997 0.93620 1.01356 1.05153 1.21940 0.93238 1.02244 1.06146 1.23446 0.99027 0.94459 0.98101 1.46149 1.06708 1.22893 1.32728 1.22421 0.79875 1.01289 1.02107 1.74401 0.91001 1.22845 1.18355 0.95214 0.90198 0.91061 0.91998 0.90081 0.95245 0.90322 0.93982 0.91898 0.92661 0.91252 0.90143 0.93181 0.94837 0.92766 0.81762 0.75448 0.89810 0.83996 0.90294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 9.57 127.69 1.22 1.70 16 2 N -0.57 -13.91 5.02 -948.81 -4.76 -18.67 16 3 C 0.02 0.45 9.32 127.69 1.19 1.64 16 4 C 0.07 1.75 4.96 86.30 0.43 2.17 16 5 C -0.11 -3.67 5.46 30.60 0.17 -3.50 16 6 C 0.12 4.60 5.34 86.38 0.46 5.06 16 7 N -0.59 -26.76 2.47 -829.70 -2.05 -28.80 16 8 C 0.22 10.68 3.82 85.63 0.33 11.01 16 9 C -0.49 -27.42 8.27 25.60 0.21 -27.20 16 10 H 0.02 1.16 8.06 -2.91 -0.02 1.14 16 11 C 0.03 1.74 5.47 84.65 0.46 2.20 16 12 N -0.95 -57.10 13.96 21.45 0.30 -56.80 16 13 Si 0.93 41.70 27.47 68.60 1.88 43.58 16 14 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 15 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 16 H -0.25 -10.57 6.54 99.48 0.65 -9.91 16 17 C 0.59 28.30 7.62 86.75 0.66 28.96 16 18 O -0.58 -28.80 16.56 -3.96 -0.07 -28.87 16 19 C -0.06 -2.79 6.71 42.46 0.28 -2.51 16 20 C -0.21 -7.31 10.81 22.41 0.24 -7.07 16 21 C -0.01 -0.24 11.46 83.54 0.96 0.72 16 22 N -0.30 -9.91 3.70 -369.43 -1.37 -11.28 16 23 C 0.08 1.97 11.31 127.77 1.44 3.41 16 24 N -0.23 -10.10 7.54 -48.18 -0.36 -10.47 16 25 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 26 H 0.08 1.27 8.12 -2.38 -0.02 1.25 16 27 H 0.07 1.29 8.12 -2.39 -0.02 1.27 16 28 H 0.06 1.48 6.47 -2.38 -0.02 1.47 16 29 H 0.08 1.48 8.12 -2.38 -0.02 1.46 16 30 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.08 2.05 8.06 -2.38 -0.02 2.03 16 32 H 0.04 1.07 8.12 -2.39 -0.02 1.05 16 33 H 0.06 2.03 6.55 -2.39 -0.02 2.01 16 34 H 0.05 2.01 8.14 -2.39 -0.02 2.00 16 35 H 0.07 2.72 7.50 -2.38 -0.02 2.70 16 36 H 0.08 3.00 8.07 -2.38 -0.02 2.98 16 37 H 0.05 2.45 4.99 -2.39 -0.01 2.44 16 38 H 0.03 1.52 7.46 -2.39 -0.02 1.50 16 39 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 40 H 0.16 5.20 8.06 -2.91 -0.02 5.18 16 41 H 0.23 3.44 8.06 -2.91 -0.02 3.41 16 42 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 43 H 0.14 1.79 8.13 -2.39 -0.02 1.77 16 44 H 0.08 2.12 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -76.78 360.52 2.55 -74.23 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: 0.91 Total: 20.48 kcal Atomic # 6 Polarization: 8.53 SS G_CDS: 8.06 Total: 16.60 kcal Atomic # 7 Polarization: -117.78 SS G_CDS: -8.24 Total: -126.02 kcal Atomic # 8 Polarization: -28.80 SS G_CDS: -0.07 Total: -28.87 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 1.88 Total: 43.58 kcal Total: -76.78 2.55 -74.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609167460.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.741 kcal (2) G-P(sol) polarization free energy of solvation -76.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds