Wall clock time and date at job start Tue Mar 31 2020 03:26:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31515 * 1
3 3 Si 1.86805 * 120.00006 * 2 1
4 4 H 1.48500 * 109.46727 * 269.99605 * 3 2 1
5 5 H 1.48500 * 109.47195 * 29.98989 * 3 2 1
6 6 H 1.48497 * 109.47158 * 149.99579 * 3 2 1
7 7 C 1.37877 * 119.99978 * 179.97438 * 2 1 3
8 8 H 1.07996 * 120.00374 * 359.97438 * 7 2 1
9 9 C 1.50707 * 119.99678 * 180.02562 * 7 2 1
10 10 N 1.46901 * 109.46994 * 179.97438 * 9 7 2
11 11 C 1.46896 * 110.99994 * 193.94975 * 10 9 7
12 12 C 1.53000 * 109.46964 * 66.04816 * 11 10 9
13 13 N 1.46905 * 109.46975 * 179.97438 * 12 11 10
14 14 C 1.47005 * 110.99923 * 293.63070 * 13 12 11
15 15 C 1.53104 * 109.25799 * 177.60859 * 14 13 12
16 16 O 1.43012 * 109.25572 * 56.85207 * 15 14 13
17 17 C 1.43018 * 113.73749 * 301.32913 * 16 15 14
18 18 C 1.47016 * 110.99575 * 169.99745 * 13 12 11
19 19 C 1.46903 * 110.99883 * 69.99636 * 10 9 7
20 20 C 1.50698 * 109.47348 * 293.95479 * 19 10 9
21 21 C 1.39874 * 126.04031 * 270.00061 * 20 19 10
22 22 N 1.30836 * 108.20052 * 179.73886 * 21 20 19
23 23 N 1.40084 * 108.20904 * 0.40640 * 22 21 20
24 24 H 0.97001 * 126.04219 * 179.85882 * 23 22 21
25 25 C 1.34947 * 107.92164 * 359.58781 * 23 22 21
26 26 H 0.97000 * 119.99662 * 0.02562 * 1 2 3
27 27 H 1.09000 * 109.47496 * 59.99795 * 9 7 2
28 28 H 1.09000 * 109.46862 * 299.99347 * 9 7 2
29 29 H 1.08997 * 109.47182 * 186.04319 * 11 10 9
30 30 H 1.09001 * 109.47505 * 306.04613 * 11 10 9
31 31 H 1.09003 * 109.47187 * 299.99868 * 12 11 10
32 32 H 1.09001 * 109.47345 * 60.00121 * 12 11 10
33 33 H 1.08997 * 109.50931 * 297.54394 * 14 13 12
34 34 H 1.09009 * 109.50551 * 57.67802 * 14 13 12
35 35 H 1.08999 * 109.50126 * 296.91597 * 15 14 13
36 36 H 1.08997 * 109.54074 * 176.80824 * 15 14 13
37 37 H 1.08998 * 109.50875 * 298.73678 * 17 16 15
38 38 H 1.09002 * 109.53886 * 178.62924 * 17 16 15
39 39 H 1.08997 * 109.51292 * 302.32710 * 18 13 12
40 40 H 1.09001 * 109.50798 * 62.41738 * 18 13 12
41 41 H 1.09007 * 109.47163 * 173.95617 * 19 10 9
42 42 H 1.09002 * 109.47019 * 53.95729 * 19 10 9
43 43 H 1.08001 * 125.89534 * 0.02562 * 21 20 19
44 44 H 1.08006 * 126.12506 * 180.22115 * 25 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6178 0.0000
4 1 2.4967 2.0463 -1.4001
5 1 1.4465 2.6528 0.6998
6 1 3.5467 1.4402 0.7001
7 6 2.0045 -1.1940 0.0005
8 1 1.4646 -2.1294 0.0014
9 6 3.5116 -1.1940 0.0011
10 7 4.0013 -2.5790 0.0022
11 6 5.4315 -2.6314 0.3334
12 6 5.6376 -2.1713 1.7780
13 7 7.0678 -2.2243 2.1094
14 6 7.5555 -3.6110 2.1181
15 6 9.0588 -3.6158 2.4082
16 8 9.3017 -2.9487 3.6497
17 6 8.8398 -1.5954 3.6760
18 6 7.3343 -1.5702 3.3988
19 6 3.7350 -3.2325 -1.2862
20 6 2.2473 -3.3784 -1.4774
21 6 1.4690 -4.4691 -1.0761
22 7 0.2266 -4.2289 -1.4084
23 7 0.1763 -2.9801 -2.0410
24 1 -0.6187 -2.5506 -2.3937
25 6 1.4284 -2.4774 -2.0678
26 1 -0.4850 0.8401 -0.0004
27 1 3.8746 -0.6799 0.8911
28 1 3.8752 -0.6804 -0.8889
29 1 5.7928 -3.6537 0.2227
30 1 5.9845 -1.9757 -0.3392
31 1 5.2762 -1.1489 1.8887
32 1 5.0847 -2.8270 2.4506
33 1 7.0339 -4.1755 2.8910
34 1 7.3710 -4.0679 1.1457
35 1 9.5856 -3.0973 1.6072
36 1 9.4145 -4.6441 2.4719
37 1 9.3603 -1.0182 2.9119
38 1 9.0366 -1.1620 4.6566
39 1 6.9884 -0.5372 3.3614
40 1 6.8086 -2.1015 4.1920
41 1 4.2010 -4.2179 -1.2970
42 1 4.1474 -2.6267 -2.0930
43 1 1.8305 -5.3544 -0.5740
44 1 1.7239 -1.5265 -2.4860
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000610931001.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:26:07
Heat of formation + Delta-G solvation = 64.134863 kcal
Electronic energy + Delta-G solvation = -24523.306029 eV
Core-core repulsion = 21092.486527 eV
Total energy + Delta-G solvation = -3430.819503 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 294.180 amu
Computer time = 0.44 seconds
Orbital eigenvalues (eV)
-40.27391 -39.58883 -37.17532 -35.41287 -32.56212 -31.33053 -30.95060 -30.13449
-28.83934 -27.91796 -25.79265 -24.12229 -23.40535 -22.15309 -20.96999 -20.47039
-19.85224 -18.95029 -17.18620 -16.73076 -16.37704 -16.20024 -15.26624 -15.12604
-14.93811 -14.61038 -14.46907 -13.67715 -13.46747 -13.45760 -13.42860 -13.13781
-12.74308 -12.37395 -12.28525 -12.01174 -11.75313 -11.50874 -11.46518 -11.31635
-11.04738 -10.76813 -10.70228 -10.41534 -9.99032 -9.82977 -9.75403 -9.66164
-9.34217 -8.71280 -8.45823 -8.34260 -7.35132 -7.12563 -6.06114 -3.96810
3.03444 3.22040 3.31087 3.33892 3.60963 3.74962 3.91445 4.00435
4.37642 4.79661 4.93203 4.96779 5.06605 5.10118 5.21212 5.24963
5.40857 5.47047 5.55063 5.61255 5.74390 5.75499 5.78438 5.88924
5.90078 5.98115 6.03419 6.24542 6.27592 6.35982 6.49904 6.74592
6.78914 6.93205 6.96777 7.05225 7.07570 7.15990 7.61557 7.66446
7.94874 8.08555 8.31668 8.67532 8.71133 9.12025 9.54005 11.02288
Molecular weight = 294.18amu
Principal moments of inertia in cm(-1)
A = 0.016580 B = 0.004522 C = 0.003725
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1688.328820 B = 6189.875625 C = 7514.891321
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.895 5.895
2 C 0.066 3.934
3 Si 0.862 3.138
4 H -0.280 1.280
5 H -0.289 1.289
6 H -0.269 1.269
7 C -0.497 4.497
8 H 0.107 0.893
9 C 0.159 3.841
10 N -0.526 5.526
11 C 0.061 3.939
12 C 0.059 3.941
13 N -0.539 5.539
14 C 0.015 3.985
15 C 0.064 3.936
16 O -0.389 6.389
17 C 0.065 3.935
18 C 0.018 3.982
19 C 0.154 3.846
20 C -0.247 4.247
21 C 0.059 3.941
22 N -0.330 5.330
23 N -0.472 5.472
24 H 0.431 0.569
25 C 0.158 3.842
26 H 0.260 0.740
27 H 0.026 0.974
28 H -0.019 1.019
29 H 0.062 0.938
30 H 0.029 0.971
31 H 0.080 0.920
32 H 0.045 0.955
33 H 0.043 0.957
34 H 0.089 0.911
35 H 0.058 0.942
36 H 0.095 0.905
37 H 0.058 0.942
38 H 0.095 0.905
39 H 0.085 0.915
40 H 0.043 0.957
41 H 0.060 0.940
42 H 0.023 0.977
43 H 0.164 0.836
44 H 0.160 0.840
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 13.932 -4.620 0.296 14.681
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.535 5.535
2 C -0.135 4.135
3 Si 0.690 3.310
4 H -0.206 1.206
5 H -0.215 1.215
6 H -0.194 1.194
7 C -0.536 4.536
8 H 0.124 0.876
9 C 0.033 3.967
10 N -0.251 5.251
11 C -0.068 4.068
12 C -0.068 4.068
13 N -0.265 5.265
14 C -0.113 4.113
15 C -0.013 4.013
16 O -0.308 6.308
17 C -0.012 4.012
18 C -0.111 4.111
19 C 0.025 3.975
20 C -0.259 4.259
21 C -0.126 4.126
22 N -0.153 5.153
23 N -0.177 5.177
24 H 0.273 0.727
25 C 0.008 3.992
26 H 0.070 0.930
27 H 0.044 0.956
28 H -0.001 1.001
29 H 0.080 0.920
30 H 0.047 0.953
31 H 0.098 0.902
32 H 0.063 0.937
33 H 0.061 0.939
34 H 0.107 0.893
35 H 0.076 0.924
36 H 0.113 0.887
37 H 0.076 0.924
38 H 0.113 0.887
39 H 0.104 0.896
40 H 0.061 0.939
41 H 0.078 0.922
42 H 0.041 0.959
43 H 0.181 0.819
44 H 0.177 0.823
Dipole moment (debyes) X Y Z Total
from point charges 12.691 -5.053 0.478 13.668
hybrid contribution 0.599 2.056 -0.114 2.145
sum 13.290 -2.996 0.364 13.628
Atomic orbital electron populations
1.69895 1.05819 1.26376 1.51407 1.24910 0.94660 0.98142 0.95836
0.87063 0.80616 0.84997 0.78349 1.20631 1.21487 1.19368 1.21724
0.89029 0.95528 1.47283 0.87561 1.20265 0.97279 0.84346 0.94841
1.62002 1.12184 1.19873 1.31052 1.21930 0.90357 0.99658 0.94807
1.22159 0.85319 1.02345 0.97011 1.62184 1.18419 1.15862 1.30001
1.22825 0.96056 0.90153 1.02274 1.22675 0.94561 0.97643 0.86424
1.87955 1.81372 1.25818 1.35627 1.22654 0.92929 0.83552 1.02054
1.22753 0.97063 1.00573 0.90671 1.19977 0.91505 0.96923 0.89052
1.19284 0.96362 0.97255 1.12991 1.23333 0.90524 0.99176 0.99606
1.77100 1.20312 0.99041 1.18869 1.45976 1.08343 1.15424 1.47969
0.72663 1.21908 0.84539 0.96185 0.96558 0.92966 0.95619 1.00099
0.91969 0.95257 0.90163 0.93710 0.93919 0.89291 0.92412 0.88674
0.92375 0.88663 0.89635 0.93913 0.92203 0.95893 0.81868 0.82288
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -24.97 13.96 55.43 0.77 -24.20 16
2 C 0.07 1.73 5.47 -17.82 -0.10 1.63 16
3 Si 0.86 20.27 27.47 -169.99 -4.67 15.60 16
4 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16
5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16
6 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16
7 C -0.50 -12.66 6.19 -34.44 -0.21 -12.87 16
8 H 0.11 2.96 4.88 -52.49 -0.26 2.70 16
9 C 0.16 3.57 3.65 -4.97 -0.02 3.55 16
10 N -0.53 -10.22 4.56 -237.51 -1.08 -11.31 16
11 C 0.06 0.99 4.89 -3.83 -0.02 0.97 16
12 C 0.06 0.93 4.91 -3.82 -0.02 0.91 16
13 N -0.54 -7.28 4.73 -234.30 -1.11 -8.38 16
14 C 0.02 0.18 5.44 -3.71 -0.02 0.16 16
15 C 0.06 0.66 7.01 37.21 0.26 0.92 16
16 O -0.39 -4.72 10.83 -35.23 -0.38 -5.10 16
17 C 0.07 0.69 7.01 37.21 0.26 0.95 16
18 C 0.02 0.22 5.64 -3.71 -0.02 0.20 16
19 C 0.15 2.75 5.44 -4.98 -0.03 2.73 16
20 C -0.25 -4.86 3.70 -105.05 -0.39 -5.25 16
21 C 0.06 1.16 11.68 -17.36 -0.20 0.95 16
22 N -0.33 -6.92 12.70 30.63 0.39 -6.53 16
23 N -0.47 -9.44 7.34 30.45 0.22 -9.21 16
24 H 0.43 7.77 8.96 -182.61 -1.64 6.13 16
25 C 0.16 3.20 8.21 -17.22 -0.14 3.06 16
26 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16
27 H 0.03 0.60 5.04 -51.93 -0.26 0.34 16
28 H -0.02 -0.42 7.41 -51.93 -0.39 -0.81 16
29 H 0.06 0.89 6.30 -51.93 -0.33 0.56 16
30 H 0.03 0.49 8.12 -51.93 -0.42 0.06 16
31 H 0.08 1.41 6.20 -51.93 -0.32 1.09 16
32 H 0.04 0.75 8.12 -51.93 -0.42 0.33 16
33 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16
34 H 0.09 0.97 6.38 -51.92 -0.33 0.64 16
35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16
36 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16
37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16
38 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16
39 H 0.09 1.01 8.09 -51.93 -0.42 0.59 16
40 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16
41 H 0.06 0.93 7.93 -51.93 -0.41 0.52 16
42 H 0.02 0.40 8.01 -51.93 -0.42 -0.01 16
43 H 0.16 2.75 8.06 -52.49 -0.42 2.32 16
44 H 0.16 3.19 7.77 -52.48 -0.41 2.79 16
LS Contribution 340.03 15.07 5.12 5.12
Total: -1.00 -29.80 340.03 -9.52 -39.32
By element:
Atomic # 1 Polarization: 14.92 SS G_CDS: -8.15 Total: 6.78 kcal
Atomic # 6 Polarization: -1.44 SS G_CDS: -0.65 Total: -2.09 kcal
Atomic # 7 Polarization: -58.83 SS G_CDS: -0.81 Total: -59.63 kcal
Atomic # 8 Polarization: -4.72 SS G_CDS: -0.38 Total: -5.10 kcal
Atomic # 14 Polarization: 20.27 SS G_CDS: -4.67 Total: 15.60 kcal
Total LS contribution 5.12 Total: 5.12 kcal
Total: -29.80 -9.52 -39.32 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000610931001.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 103.456 kcal
(2) G-P(sol) polarization free energy of solvation -29.798 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.658 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.523 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.321 kcal
(6) G-S(sol) free energy of system = (1) + (5) 64.135 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.44 seconds