Wall clock time and date at job start Tue Mar 31 2020 03:26:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31515 * 1
3 3 Si 1.86805 * 120.00006 * 2 1
4 4 H 1.48500 * 109.46727 * 269.99605 * 3 2 1
5 5 H 1.48500 * 109.47195 * 29.98989 * 3 2 1
6 6 H 1.48497 * 109.47158 * 149.99579 * 3 2 1
7 7 C 1.37877 * 119.99978 * 179.97438 * 2 1 3
8 8 H 1.07996 * 120.00374 * 359.97438 * 7 2 1
9 9 C 1.50707 * 119.99678 * 180.02562 * 7 2 1
10 10 N 1.46901 * 109.46994 * 179.97438 * 9 7 2
11 11 C 1.46896 * 110.99994 * 193.94975 * 10 9 7
12 12 C 1.53000 * 109.46964 * 66.04816 * 11 10 9
13 13 N 1.46905 * 109.46975 * 179.97438 * 12 11 10
14 14 C 1.47005 * 110.99923 * 293.63070 * 13 12 11
15 15 C 1.53104 * 109.25799 * 177.60859 * 14 13 12
16 16 O 1.43012 * 109.25572 * 56.85207 * 15 14 13
17 17 C 1.43018 * 113.73749 * 301.32913 * 16 15 14
18 18 C 1.47016 * 110.99575 * 169.99745 * 13 12 11
19 19 C 1.46903 * 110.99883 * 69.99636 * 10 9 7
20 20 C 1.50698 * 109.47348 * 293.95479 * 19 10 9
21 21 C 1.39874 * 126.04031 * 270.00061 * 20 19 10
22 22 N 1.30836 * 108.20052 * 179.73886 * 21 20 19
23 23 N 1.40084 * 108.20904 * 0.40640 * 22 21 20
24 24 H 0.97001 * 126.04219 * 179.85882 * 23 22 21
25 25 C 1.34947 * 107.92164 * 359.58781 * 23 22 21
26 26 H 0.97000 * 119.99662 * 0.02562 * 1 2 3
27 27 H 1.09000 * 109.47496 * 59.99795 * 9 7 2
28 28 H 1.09000 * 109.46862 * 299.99347 * 9 7 2
29 29 H 1.08997 * 109.47182 * 186.04319 * 11 10 9
30 30 H 1.09001 * 109.47505 * 306.04613 * 11 10 9
31 31 H 1.09003 * 109.47187 * 299.99868 * 12 11 10
32 32 H 1.09001 * 109.47345 * 60.00121 * 12 11 10
33 33 H 1.08997 * 109.50931 * 297.54394 * 14 13 12
34 34 H 1.09009 * 109.50551 * 57.67802 * 14 13 12
35 35 H 1.08999 * 109.50126 * 296.91597 * 15 14 13
36 36 H 1.08997 * 109.54074 * 176.80824 * 15 14 13
37 37 H 1.08998 * 109.50875 * 298.73678 * 17 16 15
38 38 H 1.09002 * 109.53886 * 178.62924 * 17 16 15
39 39 H 1.08997 * 109.51292 * 302.32710 * 18 13 12
40 40 H 1.09001 * 109.50798 * 62.41738 * 18 13 12
41 41 H 1.09007 * 109.47163 * 173.95617 * 19 10 9
42 42 H 1.09002 * 109.47019 * 53.95729 * 19 10 9
43 43 H 1.08001 * 125.89534 * 0.02562 * 21 20 19
44 44 H 1.08006 * 126.12506 * 180.22115 * 25 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6178 0.0000
4 1 2.4967 2.0463 -1.4001
5 1 1.4465 2.6528 0.6998
6 1 3.5467 1.4402 0.7001
7 6 2.0045 -1.1940 0.0005
8 1 1.4646 -2.1294 0.0014
9 6 3.5116 -1.1940 0.0011
10 7 4.0013 -2.5790 0.0022
11 6 5.4315 -2.6314 0.3334
12 6 5.6376 -2.1713 1.7780
13 7 7.0678 -2.2243 2.1094
14 6 7.5555 -3.6110 2.1181
15 6 9.0588 -3.6158 2.4082
16 8 9.3017 -2.9487 3.6497
17 6 8.8398 -1.5954 3.6760
18 6 7.3343 -1.5702 3.3988
19 6 3.7350 -3.2325 -1.2862
20 6 2.2473 -3.3784 -1.4774
21 6 1.4690 -4.4691 -1.0761
22 7 0.2266 -4.2289 -1.4084
23 7 0.1763 -2.9801 -2.0410
24 1 -0.6187 -2.5506 -2.3937
25 6 1.4284 -2.4774 -2.0678
26 1 -0.4850 0.8401 -0.0004
27 1 3.8746 -0.6799 0.8911
28 1 3.8752 -0.6804 -0.8889
29 1 5.7928 -3.6537 0.2227
30 1 5.9845 -1.9757 -0.3392
31 1 5.2762 -1.1489 1.8887
32 1 5.0847 -2.8270 2.4506
33 1 7.0339 -4.1755 2.8910
34 1 7.3710 -4.0679 1.1457
35 1 9.5856 -3.0973 1.6072
36 1 9.4145 -4.6441 2.4719
37 1 9.3603 -1.0182 2.9119
38 1 9.0366 -1.1620 4.6566
39 1 6.9884 -0.5372 3.3614
40 1 6.8086 -2.1015 4.1920
41 1 4.2010 -4.2179 -1.2970
42 1 4.1474 -2.6267 -2.0930
43 1 1.8305 -5.3544 -0.5740
44 1 1.7239 -1.5265 -2.4860
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000610931001.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:26:07
Heat of formation + Delta-G solvation = 40.979130 kcal
Electronic energy + Delta-G solvation = -24524.310137 eV
Core-core repulsion = 21092.486527 eV
Total energy + Delta-G solvation = -3431.823611 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 294.180 amu
Computer time = 0.53 seconds
Orbital eigenvalues (eV)
-41.83720 -40.53921 -38.55928 -36.55978 -34.50291 -32.48170 -32.12298 -31.65305
-30.39057 -29.46661 -26.95781 -25.19969 -24.82992 -23.63569 -22.52535 -21.58074
-21.17080 -20.51450 -19.03010 -18.19092 -17.56067 -17.10246 -16.60092 -16.21986
-16.07442 -15.94966 -15.74304 -15.15593 -15.04416 -14.94102 -14.86228 -14.47084
-14.25423 -13.95749 -13.57399 -13.30124 -13.23022 -12.82628 -12.76742 -12.55367
-12.42302 -12.29088 -11.96717 -11.70281 -11.54007 -11.34739 -11.28437 -11.22139
-10.66686 -10.62929 -10.10807 -9.41013 -8.89553 -8.75029 -8.07164 -6.01146
1.31269 1.40267 1.45421 1.48787 2.17612 2.42284 2.47121 2.72194
2.98964 3.22074 3.64616 3.88212 3.98041 4.05630 4.20866 4.25210
4.30142 4.36824 4.40335 4.45707 4.53980 4.59401 4.68502 4.76148
4.81478 4.84463 4.89764 4.93473 5.02715 5.03361 5.07122 5.10698
5.15118 5.28527 5.60121 5.73696 5.91726 5.98993 6.12871 6.19681
6.24673 6.54564 6.77817 6.83862 7.06421 7.14373 7.52023 9.01467
Molecular weight = 294.18amu
Principal moments of inertia in cm(-1)
A = 0.016580 B = 0.004522 C = 0.003725
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1688.328820 B = 6189.875625 C = 7514.891321
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.933 5.933
2 C 0.022 3.978
3 Si 0.913 3.087
4 H -0.272 1.272
5 H -0.297 1.297
6 H -0.262 1.262
7 C -0.486 4.486
8 H 0.082 0.918
9 C 0.168 3.832
10 N -0.539 5.539
11 C 0.068 3.932
12 C 0.069 3.931
13 N -0.542 5.542
14 C 0.014 3.986
15 C 0.064 3.936
16 O -0.405 6.405
17 C 0.068 3.932
18 C 0.015 3.985
19 C 0.154 3.846
20 C -0.249 4.249
21 C 0.054 3.946
22 N -0.352 5.352
23 N -0.474 5.474
24 H 0.435 0.565
25 C 0.145 3.855
26 H 0.257 0.743
27 H 0.018 0.982
28 H -0.019 1.019
29 H 0.087 0.913
30 H 0.030 0.970
31 H 0.058 0.942
32 H 0.030 0.970
33 H 0.034 0.966
34 H 0.100 0.900
35 H 0.064 0.936
36 H 0.117 0.883
37 H 0.063 0.937
38 H 0.114 0.886
39 H 0.085 0.915
40 H 0.034 0.966
41 H 0.090 0.910
42 H 0.029 0.971
43 H 0.191 0.809
44 H 0.156 0.844
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 16.433 -5.252 0.236 17.253
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.575 5.575
2 C -0.176 4.176
3 Si 0.740 3.260
4 H -0.198 1.198
5 H -0.224 1.224
6 H -0.186 1.186
7 C -0.525 4.525
8 H 0.099 0.901
9 C 0.041 3.959
10 N -0.263 5.263
11 C -0.060 4.060
12 C -0.059 4.059
13 N -0.267 5.267
14 C -0.113 4.113
15 C -0.012 4.012
16 O -0.324 6.324
17 C -0.009 4.009
18 C -0.113 4.113
19 C 0.026 3.974
20 C -0.260 4.260
21 C -0.131 4.131
22 N -0.176 5.176
23 N -0.180 5.180
24 H 0.278 0.722
25 C -0.005 4.005
26 H 0.066 0.934
27 H 0.036 0.964
28 H -0.001 1.001
29 H 0.105 0.895
30 H 0.048 0.952
31 H 0.076 0.924
32 H 0.049 0.951
33 H 0.052 0.948
34 H 0.118 0.882
35 H 0.082 0.918
36 H 0.135 0.865
37 H 0.082 0.918
38 H 0.132 0.868
39 H 0.104 0.896
40 H 0.052 0.948
41 H 0.108 0.892
42 H 0.047 0.953
43 H 0.207 0.793
44 H 0.174 0.826
Dipole moment (debyes) X Y Z Total
from point charges 15.222 -5.694 0.413 16.257
hybrid contribution -0.170 2.156 -0.085 2.164
sum 15.052 -3.538 0.327 15.466
Atomic orbital electron populations
1.70021 1.07168 1.26695 1.53566 1.25445 0.95115 1.00854 0.96169
0.86229 0.79572 0.81598 0.78568 1.19776 1.22405 1.18638 1.21814
0.90575 0.94392 1.45712 0.90052 1.20034 0.95259 0.86343 0.94290
1.61899 1.14459 1.17890 1.32086 1.21938 0.88235 1.01178 0.94682
1.21950 0.86757 1.00526 0.96704 1.62205 1.16561 1.17202 1.30778
1.22915 0.96943 0.88890 1.02599 1.22806 0.93471 0.98903 0.86044
1.87941 1.81411 1.26431 1.36579 1.22729 0.91468 0.83282 1.03381
1.22830 0.98353 1.00325 0.89818 1.20089 0.90428 0.98435 0.88486
1.19592 0.97440 0.96854 1.12153 1.23819 0.90059 1.00050 0.99146
1.77054 1.21382 0.99588 1.19583 1.46023 1.08636 1.15364 1.47940
0.72167 1.22010 0.84886 0.96403 0.97186 0.93376 0.96388 1.00145
0.89455 0.95168 0.92403 0.95150 0.94775 0.88212 0.91810 0.86491
0.91847 0.86762 0.89640 0.94777 0.89164 0.95309 0.79250 0.82648
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -52.89 13.96 21.45 0.30 -52.59 16
2 C 0.02 1.14 5.47 84.65 0.46 1.60 16
3 Si 0.91 41.74 27.47 68.60 1.88 43.62 16
4 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16
5 H -0.30 -13.93 7.11 99.48 0.71 -13.23 16
6 H -0.26 -11.57 6.54 99.48 0.65 -10.92 16
7 C -0.49 -24.71 6.19 25.60 0.16 -24.55 16
8 H 0.08 4.55 4.88 -2.91 -0.01 4.53 16
9 C 0.17 7.35 3.65 85.56 0.31 7.67 16
10 N -0.54 -19.90 4.56 -905.35 -4.13 -24.03 16
11 C 0.07 2.03 4.89 86.30 0.42 2.45 16
12 C 0.07 2.08 4.91 86.30 0.42 2.51 16
13 N -0.54 -13.64 4.73 -895.19 -4.23 -17.87 16
14 C 0.01 0.30 5.44 86.32 0.47 0.77 16
15 C 0.06 1.15 7.01 72.02 0.50 1.66 16
16 O -0.40 -8.84 10.83 -148.98 -1.61 -10.45 16
17 C 0.07 1.30 7.01 72.02 0.50 1.81 16
18 C 0.02 0.35 5.64 86.31 0.49 0.83 16
19 C 0.15 5.12 5.44 85.56 0.47 5.58 16
20 C -0.25 -9.48 3.70 -20.14 -0.07 -9.56 16
21 C 0.05 2.06 11.68 85.24 1.00 3.06 16
22 N -0.35 -14.68 12.70 -57.02 -0.72 -15.41 16
23 N -0.47 -19.13 7.34 -57.59 -0.42 -19.55 16
24 H 0.44 16.09 8.96 -213.33 -1.91 14.18 16
25 C 0.15 5.87 8.21 83.54 0.69 6.56 16
26 H 0.26 14.10 8.31 -92.71 -0.77 13.33 16
27 H 0.02 0.83 5.04 -2.39 -0.01 0.82 16
28 H -0.02 -0.84 7.41 -2.39 -0.02 -0.85 16
29 H 0.09 2.18 6.30 -2.39 -0.02 2.17 16
30 H 0.03 0.92 8.12 -2.39 -0.02 0.90 16
31 H 0.06 2.00 6.20 -2.39 -0.01 1.99 16
32 H 0.03 0.99 8.12 -2.39 -0.02 0.97 16
33 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16
34 H 0.10 1.85 6.38 -2.38 -0.02 1.83 16
35 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16
36 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16
37 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16
38 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16
39 H 0.09 1.93 8.09 -2.39 -0.02 1.91 16
40 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16
41 H 0.09 2.47 7.93 -2.38 -0.02 2.45 16
42 H 0.03 0.94 8.01 -2.39 -0.02 0.92 16
43 H 0.19 5.95 8.06 -2.91 -0.02 5.93 16
44 H 0.16 6.30 7.77 -2.91 -0.02 6.28 16
Total: -1.00 -62.90 340.03 -4.08 -66.99
By element:
Atomic # 1 Polarization: 29.88 SS G_CDS: -0.97 Total: 28.92 kcal
Atomic # 6 Polarization: -5.44 SS G_CDS: 5.82 Total: 0.38 kcal
Atomic # 7 Polarization: -120.25 SS G_CDS: -9.21 Total: -129.46 kcal
Atomic # 8 Polarization: -8.84 SS G_CDS: -1.61 Total: -10.45 kcal
Atomic # 14 Polarization: 41.74 SS G_CDS: 1.88 Total: 43.62 kcal
Total: -62.90 -4.08 -66.99 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000610931001.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 107.968 kcal
(2) G-P(sol) polarization free energy of solvation -62.905 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.063 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.084 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.989 kcal
(6) G-S(sol) free energy of system = (1) + (5) 40.979 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.53 seconds