Wall clock time and date at job start Tue Mar 31 2020 03:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 H 1.09001 * 109.47079 * 73.66827 * 3 2 1 5 5 N 1.46895 * 109.47157 * 313.66737 * 3 2 1 6 6 C 1.46900 * 111.00305 * 84.99734 * 5 3 2 7 7 H 1.09001 * 109.46686 * 35.00119 * 6 5 3 8 8 C 1.52997 * 109.47696 * 275.00285 * 6 5 3 9 9 C 1.50701 * 109.47120 * 154.99414 * 6 5 3 10 10 O 1.21284 * 120.00057 * 14.73484 * 9 6 5 11 11 N 1.34779 * 120.00154 * 194.72210 * 9 6 5 12 12 C 1.46503 * 119.99878 * 3.72844 * 11 9 6 13 13 C 1.46493 * 120.00242 * 183.72631 * 11 9 6 14 14 C 1.50699 * 109.47205 * 90.00144 * 13 11 9 15 15 H 1.08003 * 120.00023 * 359.97438 * 14 13 11 16 16 C 1.37885 * 119.99969 * 180.02562 * 14 13 11 17 17 N 1.31511 * 120.00140 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 119.99735 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47504 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47100 * 119.99775 * 18 16 14 21 21 H 1.48506 * 109.47312 * 239.99814 * 18 16 14 22 22 C 1.53002 * 109.46804 * 193.66490 * 3 2 1 23 23 H 1.09000 * 109.99401 * 301.08629 * 22 3 2 24 24 C 1.54100 * 109.87444 * 179.97438 * 22 3 2 25 25 C 1.54804 * 104.18953 * 238.54523 * 24 22 3 26 26 C 1.54994 * 102.12332 * 339.10684 * 25 24 22 27 27 O 1.43745 * 109.87625 * 62.17227 * 22 3 2 28 28 H 4.18745 * 15.03953 * 0.02562 * 4 2 1 29 29 H 1.00905 * 110.99929 * 208.95399 * 5 3 2 30 30 H 1.09003 * 109.46499 * 308.49113 * 8 6 5 31 31 H 1.09000 * 109.47258 * 68.48484 * 8 6 5 32 32 H 1.08996 * 109.47512 * 188.49235 * 8 6 5 33 33 H 1.09000 * 109.47329 * 84.35956 * 12 11 9 34 34 H 1.08997 * 109.47197 * 204.36524 * 12 11 9 35 35 H 1.09001 * 109.46727 * 324.36242 * 12 11 9 36 36 H 1.08993 * 109.47676 * 210.00400 * 13 11 9 37 37 H 1.09007 * 109.46956 * 330.00045 * 13 11 9 38 38 H 0.96992 * 120.00127 * 180.02562 * 17 16 14 39 39 H 1.09005 * 110.48350 * 119.87546 * 24 22 3 40 40 H 1.08997 * 110.49007 * 357.22700 * 24 22 3 41 41 H 1.09003 * 110.90757 * 97.31851 * 25 24 22 42 42 H 1.09004 * 110.91335 * 220.89064 * 25 24 22 43 43 H 1.09010 * 110.61767 * 155.53971 * 26 25 24 44 44 H 1.08996 * 110.62013 * 278.53456 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0095 -0.2882 -0.9862 5 7 3.1361 -0.9554 1.0018 6 6 3.1995 -2.3139 0.4464 7 1 3.4818 -2.2636 -0.6052 8 6 1.8291 -2.9820 0.5751 9 6 4.2240 -3.1188 1.2036 10 8 4.6451 -2.7172 2.2677 11 7 4.6722 -4.2852 0.6985 12 6 4.2255 -4.7306 -0.6238 13 6 5.6061 -5.1076 1.4715 14 6 4.8320 -6.0695 2.3354 15 1 3.7522 -6.0681 2.3114 16 6 5.5021 -6.9508 3.1573 17 7 6.8169 -6.9522 3.1870 18 14 4.5425 -8.1436 4.2276 19 1 3.0872 -7.9423 4.0112 20 1 4.9089 -9.5369 3.8672 21 1 4.8684 -7.8996 5.6557 22 6 3.1553 1.4026 0.3408 23 1 2.7806 2.1224 -0.3869 24 6 4.6963 1.4138 0.3440 25 6 5.0694 1.8752 1.7738 26 6 3.7706 2.5829 2.2368 27 8 2.7231 1.7721 1.6610 28 1 -1.0501 0.0004 -0.0004 29 1 4.0336 -0.6708 1.3645 30 1 1.4791 -2.8978 1.6039 31 1 1.1208 -2.4895 -0.0911 32 1 1.9112 -4.0346 0.3042 33 1 4.8459 -4.2685 -1.3917 34 1 4.3124 -5.8151 -0.6904 35 1 3.1857 -4.4396 -0.7730 36 1 6.2478 -5.6665 0.7904 37 1 6.2194 -4.4647 2.1030 38 1 7.2883 -7.5723 3.7648 39 1 5.0742 2.1198 -0.3955 40 1 5.0855 0.4139 0.1520 41 1 5.2954 1.0208 2.4118 42 1 5.9061 2.5736 1.7513 43 1 3.7013 2.5847 3.3247 44 1 3.7276 3.5999 1.8468 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000775784509.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:20:36 Heat of formation + Delta-G solvation = -12.327426 kcal Electronic energy + Delta-G solvation = -24499.018318 eV Core-core repulsion = 21032.590411 eV Total energy + Delta-G solvation = -3466.427907 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.12039 -39.12070 -36.33510 -34.83592 -33.06029 -32.49957 -32.22323 -30.96890 -28.65697 -27.61263 -26.02816 -25.53778 -23.73886 -22.33069 -21.63044 -21.06025 -18.60849 -18.20644 -16.96038 -16.52959 -16.50006 -15.96672 -15.70806 -15.27054 -14.86837 -14.52711 -14.25844 -13.99990 -13.73209 -13.56511 -13.34905 -12.64360 -12.41941 -12.28962 -12.04109 -11.87796 -11.82735 -11.64550 -11.39813 -11.32533 -11.21676 -11.17400 -10.93287 -10.84860 -10.58416 -10.27076 -10.17848 -10.14394 -9.69020 -9.60065 -8.80233 -8.46311 -8.42893 -7.65358 -6.04354 -4.08927 2.83869 2.93007 3.30579 3.34876 3.38979 3.44477 3.70102 3.84247 4.26319 4.29731 4.45216 4.52652 4.65916 4.72204 4.93074 5.01784 5.09405 5.20670 5.26372 5.30019 5.32992 5.45000 5.50903 5.59035 5.65731 5.66129 5.75750 5.88311 5.95376 5.97763 6.00447 6.03815 6.19437 6.54198 6.75420 6.92247 7.12495 7.41568 7.45433 7.53759 7.76897 7.92421 8.23213 8.39379 8.89693 9.06813 9.56412 11.03781 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.019337 B = 0.003933 C = 0.003678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.643817 B = 7116.694242 C = 7610.561575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.154 4.154 3 C 0.196 3.804 4 H 0.075 0.925 5 N -0.652 5.652 6 C 0.067 3.933 7 H 0.059 0.941 8 C -0.136 4.136 9 C 0.503 3.497 10 O -0.531 6.531 11 N -0.600 5.600 12 C 0.076 3.924 13 C 0.245 3.755 14 C -0.526 4.526 15 H 0.058 0.942 16 C 0.061 3.939 17 N -0.895 5.895 18 Si 0.898 3.102 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.283 1.283 22 C 0.082 3.918 23 H 0.076 0.924 24 C -0.158 4.158 25 C -0.156 4.156 26 C 0.045 3.955 27 O -0.351 6.351 28 H 0.214 0.786 29 H 0.361 0.639 30 H 0.069 0.931 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.042 0.958 34 H 0.076 0.924 35 H 0.061 0.939 36 H 0.032 0.968 37 H 0.044 0.956 38 H 0.263 0.737 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.086 0.914 42 H 0.080 0.920 43 H 0.094 0.906 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.778 16.649 -10.937 21.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.155 4.155 3 C 0.087 3.913 4 H 0.092 0.908 5 N -0.290 5.290 6 C -0.046 4.046 7 H 0.077 0.923 8 C -0.194 4.194 9 C 0.289 3.711 10 O -0.408 6.408 11 N -0.332 5.332 12 C -0.068 4.068 13 C 0.126 3.874 14 C -0.564 4.564 15 H 0.076 0.924 16 C -0.141 4.141 17 N -0.534 5.534 18 Si 0.726 3.274 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.209 1.209 22 C 0.023 3.977 23 H 0.094 0.906 24 C -0.196 4.196 25 C -0.194 4.194 26 C -0.031 4.031 27 O -0.269 6.269 28 H 0.231 0.769 29 H 0.186 0.814 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.061 0.939 34 H 0.095 0.905 35 H 0.080 0.920 36 H 0.050 0.950 37 H 0.062 0.938 38 H 0.072 0.928 39 H 0.099 0.901 40 H 0.096 0.904 41 H 0.105 0.895 42 H 0.098 0.902 43 H 0.112 0.888 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.135 16.591 -9.883 20.588 hybrid contribution 0.291 -0.721 -0.120 0.787 sum -6.843 15.870 -10.004 19.969 Atomic orbital electron populations 1.24722 0.95677 1.00709 1.01262 1.22521 0.93607 0.99850 0.99495 1.18665 0.86255 0.91784 0.94610 0.90761 1.60089 1.35608 0.99433 1.33884 1.21633 0.96688 0.89755 0.96500 0.92320 1.21809 0.94362 0.99596 1.03640 1.20264 0.82422 0.82144 0.86316 1.90670 1.58275 1.69799 1.22041 1.48119 1.46479 1.20615 1.17998 1.21795 0.98883 1.01598 0.84523 1.19311 0.87861 0.89428 0.90843 1.21481 0.93439 1.17743 1.23778 0.92357 1.24934 0.94899 0.97488 0.96767 1.69938 1.06538 1.37647 1.39310 0.86444 0.80170 0.80434 0.80400 1.19752 1.20977 1.20853 1.22865 0.93290 0.94379 0.87158 0.90580 1.23064 0.94988 1.03073 0.98501 1.23171 0.98494 1.01728 0.96002 1.23566 0.86084 0.93912 0.99573 1.89049 1.40717 1.69557 1.27592 0.76923 0.81443 0.91152 0.92125 0.91632 0.93932 0.90476 0.92010 0.95007 0.93795 0.92784 0.90096 0.90353 0.89507 0.90157 0.88773 0.92527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.47 18.99 29.55 0.56 -1.91 16 2 C -0.15 -2.07 10.66 -37.12 -0.40 -2.46 16 3 C 0.20 2.47 2.19 -70.50 -0.15 2.32 16 4 H 0.08 0.80 7.43 -51.93 -0.39 0.41 16 5 N -0.65 -10.22 5.75 -103.91 -0.60 -10.81 16 6 C 0.07 1.08 2.19 -68.87 -0.15 0.93 16 7 H 0.06 0.79 6.73 -51.93 -0.35 0.45 16 8 C -0.14 -2.10 8.56 37.16 0.32 -1.78 16 9 C 0.50 10.58 6.84 -10.98 -0.08 10.50 16 10 O -0.53 -13.42 15.48 5.55 0.09 -13.34 16 11 N -0.60 -12.73 2.86 -182.96 -0.52 -13.25 16 12 C 0.08 1.21 9.75 59.85 0.58 1.79 16 13 C 0.24 6.42 5.16 -5.20 -0.03 6.39 16 14 C -0.53 -15.01 9.39 -34.44 -0.32 -15.33 16 15 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 16 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 17 N -0.90 -26.69 13.29 55.43 0.74 -25.96 16 18 Si 0.90 22.08 29.54 -169.99 -5.02 17.06 16 19 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 22 C 0.08 0.91 3.15 -26.16 -0.08 0.83 16 23 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 24 C -0.16 -1.50 5.91 -25.21 -0.15 -1.65 16 25 C -0.16 -1.53 6.96 -24.73 -0.17 -1.70 16 26 C 0.05 0.46 7.72 38.21 0.30 0.76 16 27 O -0.35 -4.73 10.70 -35.23 -0.38 -5.11 16 28 H 0.21 1.81 7.80 -54.09 -0.42 1.39 16 29 H 0.36 5.91 5.31 -39.29 -0.21 5.70 16 30 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.06 0.82 6.49 -51.93 -0.34 0.48 16 32 H 0.06 0.99 6.08 -51.93 -0.32 0.67 16 33 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.08 1.25 8.03 -51.93 -0.42 0.83 16 35 H 0.06 0.84 4.80 -51.93 -0.25 0.59 16 36 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 37 H 0.04 1.30 7.37 -51.93 -0.38 0.91 16 38 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 39 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.08 0.81 6.75 -51.93 -0.35 0.46 16 41 H 0.09 1.02 8.01 -51.93 -0.42 0.60 16 42 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.09 0.92 8.14 -51.92 -0.42 0.50 16 44 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 357.85 15.07 5.39 5.39 Total: -1.00 -34.54 357.85 -6.93 -41.47 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -6.76 Total: 4.21 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: 0.13 Total: 0.34 kcal Atomic # 7 Polarization: -49.64 SS G_CDS: -0.38 Total: -50.03 kcal Atomic # 8 Polarization: -18.16 SS G_CDS: -0.29 Total: -18.45 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.54 -6.93 -41.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775784509.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.138 kcal (2) G-P(sol) polarization free energy of solvation -34.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds