Wall clock time and date at job start Tue Mar 31 2020 03:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 H 1.09001 * 109.47079 * 73.66827 * 3 2 1 5 5 N 1.46895 * 109.47157 * 313.66737 * 3 2 1 6 6 C 1.46900 * 111.00305 * 84.99734 * 5 3 2 7 7 H 1.09001 * 109.46686 * 35.00119 * 6 5 3 8 8 C 1.52997 * 109.47696 * 275.00285 * 6 5 3 9 9 C 1.50701 * 109.47120 * 154.99414 * 6 5 3 10 10 O 1.21284 * 120.00057 * 14.73484 * 9 6 5 11 11 N 1.34779 * 120.00154 * 194.72210 * 9 6 5 12 12 C 1.46503 * 119.99878 * 3.72844 * 11 9 6 13 13 C 1.46493 * 120.00242 * 183.72631 * 11 9 6 14 14 C 1.50699 * 109.47205 * 90.00144 * 13 11 9 15 15 H 1.08003 * 120.00023 * 359.97438 * 14 13 11 16 16 C 1.37885 * 119.99969 * 180.02562 * 14 13 11 17 17 N 1.31511 * 120.00140 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 119.99735 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47504 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47100 * 119.99775 * 18 16 14 21 21 H 1.48506 * 109.47312 * 239.99814 * 18 16 14 22 22 C 1.53002 * 109.46804 * 193.66490 * 3 2 1 23 23 H 1.09000 * 109.99401 * 301.08629 * 22 3 2 24 24 C 1.54100 * 109.87444 * 179.97438 * 22 3 2 25 25 C 1.54804 * 104.18953 * 238.54523 * 24 22 3 26 26 C 1.54994 * 102.12332 * 339.10684 * 25 24 22 27 27 O 1.43745 * 109.87625 * 62.17227 * 22 3 2 28 28 H 4.18745 * 15.03953 * 0.02562 * 4 2 1 29 29 H 1.00905 * 110.99929 * 208.95399 * 5 3 2 30 30 H 1.09003 * 109.46499 * 308.49113 * 8 6 5 31 31 H 1.09000 * 109.47258 * 68.48484 * 8 6 5 32 32 H 1.08996 * 109.47512 * 188.49235 * 8 6 5 33 33 H 1.09000 * 109.47329 * 84.35956 * 12 11 9 34 34 H 1.08997 * 109.47197 * 204.36524 * 12 11 9 35 35 H 1.09001 * 109.46727 * 324.36242 * 12 11 9 36 36 H 1.08993 * 109.47676 * 210.00400 * 13 11 9 37 37 H 1.09007 * 109.46956 * 330.00045 * 13 11 9 38 38 H 0.96992 * 120.00127 * 180.02562 * 17 16 14 39 39 H 1.09005 * 110.48350 * 119.87546 * 24 22 3 40 40 H 1.08997 * 110.49007 * 357.22700 * 24 22 3 41 41 H 1.09003 * 110.90757 * 97.31851 * 25 24 22 42 42 H 1.09004 * 110.91335 * 220.89064 * 25 24 22 43 43 H 1.09010 * 110.61767 * 155.53971 * 26 25 24 44 44 H 1.08996 * 110.62013 * 278.53456 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0095 -0.2882 -0.9862 5 7 3.1361 -0.9554 1.0018 6 6 3.1995 -2.3139 0.4464 7 1 3.4818 -2.2636 -0.6052 8 6 1.8291 -2.9820 0.5751 9 6 4.2240 -3.1188 1.2036 10 8 4.6451 -2.7172 2.2677 11 7 4.6722 -4.2852 0.6985 12 6 4.2255 -4.7306 -0.6238 13 6 5.6061 -5.1076 1.4715 14 6 4.8320 -6.0695 2.3354 15 1 3.7522 -6.0681 2.3114 16 6 5.5021 -6.9508 3.1573 17 7 6.8169 -6.9522 3.1870 18 14 4.5425 -8.1436 4.2276 19 1 3.0872 -7.9423 4.0112 20 1 4.9089 -9.5369 3.8672 21 1 4.8684 -7.8996 5.6557 22 6 3.1553 1.4026 0.3408 23 1 2.7806 2.1224 -0.3869 24 6 4.6963 1.4138 0.3440 25 6 5.0694 1.8752 1.7738 26 6 3.7706 2.5829 2.2368 27 8 2.7231 1.7721 1.6610 28 1 -1.0501 0.0004 -0.0004 29 1 4.0336 -0.6708 1.3645 30 1 1.4791 -2.8978 1.6039 31 1 1.1208 -2.4895 -0.0911 32 1 1.9112 -4.0346 0.3042 33 1 4.8459 -4.2685 -1.3917 34 1 4.3124 -5.8151 -0.6904 35 1 3.1857 -4.4396 -0.7730 36 1 6.2478 -5.6665 0.7904 37 1 6.2194 -4.4647 2.1030 38 1 7.2883 -7.5723 3.7648 39 1 5.0742 2.1198 -0.3955 40 1 5.0855 0.4139 0.1520 41 1 5.2954 1.0208 2.4118 42 1 5.9061 2.5736 1.7513 43 1 3.7013 2.5847 3.3247 44 1 3.7276 3.5999 1.8468 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000775784509.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:20:36 Heat of formation + Delta-G solvation = -37.088689 kcal Electronic energy + Delta-G solvation = -24500.092047 eV Core-core repulsion = 21032.590411 eV Total energy + Delta-G solvation = -3467.501636 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.26698 -40.44632 -37.51698 -36.61090 -34.83510 -33.87754 -33.14797 -31.98300 -30.01523 -29.22707 -27.49954 -26.56715 -25.54030 -23.45703 -22.91137 -21.89631 -20.11865 -19.14624 -18.68901 -18.28426 -17.60491 -17.12519 -16.86016 -16.58670 -16.31657 -16.08651 -15.69664 -15.09582 -14.89777 -14.61970 -14.50003 -14.16854 -13.94030 -13.66042 -13.54003 -13.30666 -13.13061 -12.88626 -12.84176 -12.67157 -12.58967 -12.40890 -12.30638 -12.21550 -12.11132 -11.70880 -11.68608 -11.24464 -11.07627 -10.66221 -10.64991 -10.37762 -9.58801 -9.43207 -8.23864 -6.38350 1.35112 1.37923 1.49435 1.73859 1.85020 2.00838 2.28675 2.41502 2.90585 3.05904 3.20192 3.46109 3.58889 3.65750 3.85548 3.96828 4.04796 4.09682 4.19963 4.33334 4.36729 4.39224 4.53633 4.66342 4.69281 4.75337 4.79021 4.83880 4.92459 4.94169 4.99078 5.01635 5.17081 5.19635 5.21568 5.28728 5.54045 5.77614 5.87167 6.04163 6.04827 6.25036 6.68418 6.75391 6.85093 7.26022 7.42799 8.83380 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.019337 B = 0.003933 C = 0.003678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.643817 B = 7116.694242 C = 7610.561575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.190 4.190 3 C 0.193 3.807 4 H 0.098 0.902 5 N -0.671 5.671 6 C 0.082 3.918 7 H 0.095 0.905 8 C -0.129 4.129 9 C 0.495 3.505 10 O -0.586 6.586 11 N -0.605 5.605 12 C 0.070 3.930 13 C 0.259 3.741 14 C -0.543 4.543 15 H 0.052 0.948 16 C 0.009 3.991 17 N -0.927 5.927 18 Si 0.966 3.034 19 H -0.268 1.268 20 H -0.267 1.267 21 H -0.282 1.282 22 C 0.080 3.920 23 H 0.096 0.904 24 C -0.153 4.153 25 C -0.156 4.156 26 C 0.042 3.958 27 O -0.385 6.385 28 H 0.242 0.758 29 H 0.353 0.647 30 H 0.041 0.959 31 H 0.085 0.915 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.090 0.910 36 H 0.026 0.974 37 H -0.001 1.001 38 H 0.267 0.733 39 H 0.110 0.890 40 H 0.066 0.934 41 H 0.055 0.945 42 H 0.103 0.897 43 H 0.089 0.911 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.389 17.201 -12.878 23.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.191 4.191 3 C 0.084 3.916 4 H 0.115 0.885 5 N -0.308 5.308 6 C -0.031 4.031 7 H 0.112 0.888 8 C -0.187 4.187 9 C 0.283 3.717 10 O -0.466 6.466 11 N -0.337 5.337 12 C -0.072 4.072 13 C 0.138 3.862 14 C -0.581 4.581 15 H 0.070 0.930 16 C -0.190 4.190 17 N -0.567 5.567 18 Si 0.790 3.210 19 H -0.193 1.193 20 H -0.192 1.192 21 H -0.208 1.208 22 C 0.022 3.978 23 H 0.114 0.886 24 C -0.191 4.191 25 C -0.194 4.194 26 C -0.034 4.034 27 O -0.304 6.304 28 H 0.258 0.742 29 H 0.177 0.823 30 H 0.060 0.940 31 H 0.104 0.896 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.109 0.891 36 H 0.044 0.956 37 H 0.017 0.983 38 H 0.076 0.924 39 H 0.128 0.872 40 H 0.085 0.915 41 H 0.074 0.926 42 H 0.121 0.879 43 H 0.107 0.893 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -8.770 17.141 -11.881 22.625 hybrid contribution 0.785 -0.842 0.475 1.245 sum -7.985 16.300 -11.406 21.437 Atomic orbital electron populations 1.25524 0.96587 0.99396 0.99964 1.22920 0.94346 1.01122 1.00739 1.18850 0.86151 0.91834 0.94763 0.88467 1.60084 1.35356 0.99781 1.35587 1.21573 0.94942 0.89306 0.97240 0.88790 1.21773 0.94307 1.00132 1.02462 1.21222 0.82509 0.82001 0.85978 1.90635 1.60176 1.71116 1.24702 1.48122 1.45672 1.20339 1.19518 1.22104 1.01165 1.01658 0.82277 1.18781 0.88264 0.88662 0.90517 1.21731 0.93253 1.18461 1.24666 0.92982 1.25828 0.95887 0.99272 0.97995 1.70046 1.08058 1.38525 1.40086 0.85392 0.78785 0.78640 0.78147 1.19259 1.19210 1.20828 1.23012 0.94121 0.93983 0.86664 0.88604 1.23069 0.94047 1.03200 0.98799 1.23143 0.99256 1.01095 0.95868 1.23709 0.85460 0.94745 0.99467 1.89001 1.42143 1.70330 1.28918 0.74186 0.82271 0.94016 0.89611 0.91178 0.90706 0.91010 0.89126 0.95593 0.98324 0.92382 0.87168 0.91539 0.92583 0.87852 0.89289 0.90067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.24 18.99 74.32 1.41 -2.83 16 2 C -0.19 -4.72 10.66 31.13 0.33 -4.38 16 3 C 0.19 4.51 2.19 43.11 0.09 4.61 16 4 H 0.10 1.78 7.43 -2.39 -0.02 1.77 16 5 N -0.67 -20.76 5.75 -482.67 -2.78 -23.54 16 6 C 0.08 2.53 2.19 44.17 0.10 2.63 16 7 H 0.09 2.24 6.73 -2.39 -0.02 2.22 16 8 C -0.13 -3.76 8.56 71.98 0.62 -3.15 16 9 C 0.49 21.15 6.84 87.66 0.60 21.75 16 10 O -0.59 -31.17 15.48 -3.04 -0.05 -31.21 16 11 N -0.61 -25.88 2.86 -851.14 -2.43 -28.31 16 12 C 0.07 2.08 9.75 127.77 1.25 3.32 16 13 C 0.26 14.12 5.16 85.63 0.44 14.56 16 14 C -0.54 -31.70 9.39 25.60 0.24 -31.46 16 15 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 16 C 0.01 0.54 5.46 84.66 0.46 1.00 16 17 N -0.93 -56.45 13.29 21.45 0.28 -56.17 16 18 Si 0.97 45.59 29.54 68.60 2.03 47.61 16 19 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 20 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 21 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 22 C 0.08 1.66 3.15 30.97 0.10 1.76 16 23 H 0.10 1.58 8.14 -2.39 -0.02 1.57 16 24 C -0.15 -2.68 5.91 31.58 0.19 -2.49 16 25 C -0.16 -2.99 6.96 31.89 0.22 -2.76 16 26 C 0.04 0.84 7.72 72.66 0.56 1.40 16 27 O -0.38 -10.16 10.70 -148.98 -1.59 -11.76 16 28 H 0.24 3.33 7.80 -4.41 -0.03 3.30 16 29 H 0.35 11.89 5.31 -89.69 -0.48 11.41 16 30 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.09 2.08 6.49 -2.39 -0.02 2.06 16 32 H 0.07 1.96 6.08 -2.39 -0.01 1.94 16 33 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.07 2.23 8.03 -2.39 -0.02 2.21 16 35 H 0.09 2.17 4.80 -2.39 -0.01 2.16 16 36 H 0.03 1.42 8.07 -2.39 -0.02 1.40 16 37 H 0.00 -0.09 7.37 -2.38 -0.02 -0.10 16 38 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 39 H 0.11 1.26 8.14 -2.38 -0.02 1.24 16 40 H 0.07 1.33 6.75 -2.39 -0.02 1.31 16 41 H 0.06 1.41 8.01 -2.39 -0.02 1.39 16 42 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.09 1.77 8.14 -2.38 -0.02 1.76 16 44 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -78.50 357.85 2.58 -75.92 By element: Atomic # 1 Polarization: 23.01 SS G_CDS: 0.51 Total: 23.52 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: 6.61 Total: 3.94 kcal Atomic # 7 Polarization: -103.09 SS G_CDS: -4.92 Total: -108.02 kcal Atomic # 8 Polarization: -41.33 SS G_CDS: -1.64 Total: -42.97 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.61 kcal Total: -78.50 2.58 -75.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775784509.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.829 kcal (2) G-P(sol) polarization free energy of solvation -78.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds