Wall clock time and date at job start Tue Mar 31 2020 03:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 H 1.08997 * 109.46991 * 183.82519 * 3 2 1 5 5 N 1.46902 * 109.47182 * 63.82082 * 3 2 1 6 6 C 1.46906 * 110.99573 * 85.00187 * 5 3 2 7 7 C 1.52998 * 109.47020 * 179.97438 * 6 5 3 8 8 C 1.50696 * 109.47332 * 179.97438 * 7 6 5 9 9 O 1.21285 * 120.00000 * 0.02562 * 8 7 6 10 10 N 1.34772 * 120.00134 * 179.97438 * 8 7 6 11 11 C 1.46494 * 120.00007 * 0.02562 * 10 8 7 12 12 C 1.46506 * 119.99870 * 180.02562 * 10 8 7 13 13 C 1.50697 * 109.47461 * 90.00090 * 12 10 8 14 14 H 1.08002 * 119.99775 * 359.97438 * 13 12 10 15 15 C 1.37877 * 120.00305 * 180.02562 * 13 12 10 16 16 N 1.31512 * 120.00139 * 180.02562 * 15 13 12 17 17 Si 1.86797 * 119.99731 * 359.97438 * 15 13 12 18 18 H 1.48508 * 109.46855 * 90.00234 * 17 15 13 19 19 H 1.48500 * 109.47417 * 209.99934 * 17 15 13 20 20 H 1.48496 * 109.47443 * 330.00526 * 17 15 13 21 21 C 1.53007 * 109.46853 * 303.82566 * 3 2 1 22 22 H 1.08999 * 109.86790 * 173.99058 * 21 3 2 23 23 C 1.54096 * 109.87598 * 294.99978 * 21 3 2 24 24 C 1.54810 * 104.18625 * 121.45927 * 23 21 3 25 25 C 1.54985 * 102.09554 * 20.87702 * 24 23 21 26 26 O 1.43748 * 109.88010 * 52.83203 * 21 3 2 27 27 H 4.18741 * 15.04011 * 359.97438 * 4 2 1 28 28 H 1.00896 * 111.00219 * 208.95827 * 5 3 2 29 29 H 1.09002 * 109.46991 * 299.99841 * 6 5 3 30 30 H 1.09000 * 109.47202 * 60.00133 * 6 5 3 31 31 H 1.08995 * 109.47213 * 300.00679 * 7 6 5 32 32 H 1.09008 * 109.47264 * 60.00068 * 7 6 5 33 33 H 1.08999 * 109.47496 * 90.00456 * 11 10 8 34 34 H 1.09005 * 109.47026 * 210.00067 * 11 10 8 35 35 H 1.08997 * 109.47080 * 329.99690 * 11 10 8 36 36 H 1.09000 * 109.46767 * 210.00401 * 12 10 8 37 37 H 1.09000 * 109.46845 * 329.99456 * 12 10 8 38 38 H 0.96997 * 119.99956 * 179.97438 * 16 15 13 39 39 H 1.09005 * 110.48513 * 240.13176 * 23 21 3 40 40 H 1.09000 * 110.49234 * 2.64483 * 23 21 3 41 41 H 1.09002 * 110.90741 * 139.07654 * 24 23 21 42 42 H 1.08999 * 110.90333 * 262.64047 * 24 23 21 43 43 H 1.09001 * 110.62064 * 81.47504 * 25 24 23 44 44 H 1.08999 * 110.62060 * 204.32107 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0088 1.0262 0.0686 5 7 3.1360 -0.6102 -1.2429 6 6 3.1983 0.3795 -2.3268 7 6 3.7124 -0.2922 -3.6017 8 6 3.7758 0.7228 -4.7138 9 8 3.4430 1.8706 -4.5069 10 7 4.2032 0.3554 -5.9380 11 6 4.6057 -1.0309 -6.1877 12 6 4.2654 1.3423 -7.0189 13 6 5.6206 2.0015 -7.0201 14 1 6.3614 1.7142 -6.2886 15 6 5.9144 2.9719 -7.9545 16 7 7.0972 3.5467 -7.9558 17 14 4.6329 3.4691 -9.2192 18 1 3.8145 4.5858 -8.6820 19 1 5.3112 3.9075 -10.4654 20 1 3.7540 2.3095 -9.5158 21 6 3.1563 -0.8022 1.1984 22 1 4.2410 -0.8961 1.1465 23 6 2.7532 -0.0998 2.5094 24 6 1.9121 -1.1583 3.2637 25 6 2.3710 -2.4771 2.5914 26 8 2.5498 -2.1054 1.2077 27 1 -1.0501 -0.0009 -0.0005 28 1 4.0337 -1.0482 -1.1011 29 1 2.2027 0.7856 -2.5057 30 1 3.8744 1.1863 -2.0437 31 1 4.7080 -0.6980 -3.4225 32 1 3.0367 -1.0993 -3.8851 33 1 3.7408 -1.6067 -6.5170 34 1 5.3727 -1.0526 -6.9620 35 1 5.0032 -1.4647 -5.2702 36 1 4.1024 0.8448 -7.9749 37 1 3.4942 2.0974 -6.8663 38 1 7.3041 4.2291 -8.6133 39 1 3.6383 0.1666 3.0872 40 1 2.1549 0.7867 2.2991 41 1 2.1518 -1.1599 4.3271 42 1 0.8464 -0.9916 3.1074 43 1 3.3122 -2.8199 3.0213 44 1 1.6036 -3.2450 2.6889 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000775805261.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:23:38 Heat of formation + Delta-G solvation = -45.300497 kcal Electronic energy + Delta-G solvation = -23253.858492 eV Core-core repulsion = 19786.000765 eV Total energy + Delta-G solvation = -3467.857727 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.85265 -40.55898 -37.69339 -36.61779 -34.75676 -34.19682 -32.90494 -32.19021 -30.75465 -29.48607 -27.35225 -26.20599 -24.70268 -23.32917 -23.06658 -22.00836 -19.98712 -19.16125 -19.01917 -17.91823 -17.65870 -17.20591 -17.04764 -16.72124 -16.45814 -16.07352 -15.72259 -15.36087 -14.86969 -14.64865 -14.50329 -14.43127 -14.07039 -13.71964 -13.64948 -13.50820 -13.27690 -12.86638 -12.72019 -12.61974 -12.40891 -12.33582 -12.15258 -12.04795 -11.99439 -11.75714 -11.72454 -11.33883 -11.06888 -10.84488 -10.68364 -10.56515 -9.59370 -9.39415 -8.35434 -6.40383 1.31842 1.35838 1.44493 1.78644 1.83141 1.98610 2.29901 2.33011 2.90570 2.98929 3.18346 3.43556 3.64915 3.77125 3.94081 3.98732 4.03428 4.12698 4.20825 4.30989 4.40361 4.41578 4.56063 4.62819 4.67456 4.78608 4.82368 4.85372 4.87879 4.92562 4.95206 4.99616 5.00403 5.05460 5.17028 5.20513 5.44697 5.61502 5.77091 6.03562 6.22626 6.36718 6.60561 6.69475 6.80459 7.20254 7.41200 8.81544 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.031063 B = 0.002635 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.174541 B =10621.845514 C =10698.796741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.185 4.185 3 C 0.191 3.809 4 H 0.077 0.923 5 N -0.674 5.674 6 C 0.085 3.915 7 C -0.117 4.117 8 C 0.496 3.504 9 O -0.599 6.599 10 N -0.608 5.608 11 C 0.076 3.924 12 C 0.221 3.779 13 C -0.535 4.535 14 H 0.029 0.971 15 C 0.010 3.990 16 N -0.945 5.945 17 Si 0.948 3.052 18 H -0.277 1.277 19 H -0.273 1.273 20 H -0.238 1.238 21 C 0.082 3.918 22 H 0.092 0.908 23 C -0.151 4.151 24 C -0.148 4.148 25 C 0.038 3.962 26 O -0.380 6.380 27 H 0.239 0.761 28 H 0.359 0.641 29 H 0.056 0.944 30 H 0.026 0.974 31 H 0.115 0.885 32 H 0.120 0.880 33 H 0.078 0.922 34 H 0.065 0.935 35 H 0.092 0.908 36 H 0.050 0.950 37 H 0.017 0.983 38 H 0.269 0.731 39 H 0.097 0.903 40 H 0.072 0.928 41 H 0.099 0.901 42 H 0.067 0.933 43 H 0.074 0.926 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.530 -14.880 21.370 28.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.186 4.186 3 C 0.082 3.918 4 H 0.095 0.905 5 N -0.307 5.307 6 C -0.044 4.044 7 C -0.157 4.157 8 C 0.285 3.715 9 O -0.481 6.481 10 N -0.339 5.339 11 C -0.065 4.065 12 C 0.099 3.901 13 C -0.574 4.574 14 H 0.047 0.953 15 C -0.188 4.188 16 N -0.586 5.586 17 Si 0.771 3.229 18 H -0.203 1.203 19 H -0.199 1.199 20 H -0.162 1.162 21 C 0.024 3.976 22 H 0.109 0.891 23 C -0.189 4.189 24 C -0.186 4.186 25 C -0.038 4.038 26 O -0.299 6.299 27 H 0.256 0.744 28 H 0.180 0.820 29 H 0.074 0.926 30 H 0.044 0.956 31 H 0.133 0.867 32 H 0.138 0.862 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.111 0.889 36 H 0.068 0.932 37 H 0.035 0.965 38 H 0.078 0.922 39 H 0.116 0.884 40 H 0.091 0.909 41 H 0.118 0.882 42 H 0.086 0.914 43 H 0.092 0.908 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -11.217 -14.569 20.979 27.896 hybrid contribution 0.616 1.499 -0.409 1.671 sum -10.601 -13.070 20.571 26.578 Atomic orbital electron populations 1.25517 0.96698 1.00909 0.99376 1.22960 0.94511 1.00133 1.00960 1.18797 0.85897 0.97231 0.89844 0.90536 1.60172 1.34313 1.31541 1.04693 1.21510 1.00215 0.92490 0.90216 1.21509 1.05175 0.97503 0.91520 1.21340 0.76497 0.89302 0.84327 1.90633 1.51638 1.22977 1.82839 1.47980 1.63556 1.11847 1.10529 1.21990 1.01092 0.79908 1.03549 1.19345 0.95132 0.88655 0.86993 1.21554 0.98940 1.21542 1.15361 0.95272 1.25862 0.97647 0.95381 0.99913 1.70044 1.23282 1.27678 1.37547 0.85706 0.79127 0.79913 0.78150 1.20283 1.19855 1.16150 1.22951 0.97362 0.83660 0.93646 0.89053 1.22999 1.01599 0.99294 0.94978 1.23084 1.00271 0.94124 1.01092 1.23733 1.01433 0.97484 0.81143 1.88992 1.82288 1.32536 1.26112 0.74437 0.82003 0.92574 0.95558 0.86717 0.86171 0.90342 0.91580 0.88913 0.93165 0.96520 0.92235 0.88395 0.90943 0.88214 0.91436 0.90806 0.88596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -4.64 19.25 74.32 1.43 -3.21 16 2 C -0.18 -4.61 11.19 31.12 0.35 -4.26 16 3 C 0.19 4.20 2.24 43.11 0.10 4.30 16 4 H 0.08 1.66 7.80 -2.39 -0.02 1.65 16 5 N -0.67 -15.62 6.26 -500.98 -3.14 -18.75 16 6 C 0.09 2.45 4.76 86.30 0.41 2.86 16 7 C -0.12 -3.26 4.51 29.85 0.13 -3.12 16 8 C 0.50 20.38 7.67 87.66 0.67 21.06 16 9 O -0.60 -30.79 15.56 -3.04 -0.05 -30.84 16 10 N -0.61 -25.03 2.86 -851.14 -2.43 -27.46 16 11 C 0.08 2.18 10.24 127.77 1.31 3.49 16 12 C 0.22 11.02 4.23 85.63 0.36 11.38 16 13 C -0.54 -31.98 9.94 25.60 0.25 -31.73 16 14 H 0.03 1.94 8.06 -2.91 -0.02 1.91 16 15 C 0.01 0.59 5.47 84.65 0.46 1.06 16 16 N -0.95 -60.35 13.96 21.45 0.30 -60.05 16 17 Si 0.95 45.11 27.47 68.60 1.88 47.00 16 18 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 19 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 20 H -0.24 -10.20 6.54 99.48 0.65 -9.55 16 21 C 0.08 1.39 3.07 30.97 0.10 1.49 16 22 H 0.09 1.26 8.01 -2.39 -0.02 1.24 16 23 C -0.15 -1.97 6.28 31.58 0.20 -1.77 16 24 C -0.15 -1.69 7.15 31.89 0.23 -1.47 16 25 C 0.04 0.51 7.72 72.66 0.56 1.07 16 26 O -0.38 -7.73 10.59 -148.98 -1.58 -9.30 16 27 H 0.24 3.55 7.80 -4.41 -0.03 3.52 16 28 H 0.36 6.79 8.27 -89.70 -0.74 6.05 16 29 H 0.06 1.88 7.94 -2.39 -0.02 1.86 16 30 H 0.03 0.83 8.01 -2.39 -0.02 0.81 16 31 H 0.11 2.61 7.40 -2.39 -0.02 2.59 16 32 H 0.12 2.81 8.11 -2.38 -0.02 2.79 16 33 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.07 2.01 8.07 -2.38 -0.02 1.99 16 35 H 0.09 2.05 6.44 -2.39 -0.02 2.04 16 36 H 0.05 2.29 7.13 -2.39 -0.02 2.27 16 37 H 0.02 0.90 6.85 -2.39 -0.02 0.88 16 38 H 0.27 15.91 8.31 -92.71 -0.77 15.14 16 39 H 0.10 0.89 8.14 -2.38 -0.02 0.87 16 40 H 0.07 1.08 7.27 -2.39 -0.02 1.06 16 41 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.07 0.74 8.14 -2.39 -0.02 0.73 16 44 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -82.01 365.51 1.73 -80.27 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: 0.18 Total: 17.99 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: 6.56 Total: 1.14 kcal Atomic # 7 Polarization: -100.99 SS G_CDS: -5.27 Total: -106.26 kcal Atomic # 8 Polarization: -38.52 SS G_CDS: -1.63 Total: -40.14 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 1.88 Total: 47.00 kcal Total: -82.01 1.73 -80.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775805261.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.974 kcal (2) G-P(sol) polarization free energy of solvation -82.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds