Wall clock time and date at job start Tue Mar 31 2020 02:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50708 * 119.99680 * 2 1 4 4 N 1.46901 * 109.46789 * 124.20868 * 3 2 1 5 5 C 1.46899 * 111.00208 * 302.09773 * 4 3 2 6 6 C 1.50700 * 109.47395 * 288.75729 * 5 4 3 7 7 H 1.08000 * 119.99431 * 358.64936 * 6 5 4 8 8 C 1.37874 * 119.99946 * 178.66136 * 6 5 4 9 9 N 1.31516 * 120.00222 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99808 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47025 * 359.97438 * 10 8 6 12 12 H 1.48503 * 109.47575 * 119.99540 * 10 8 6 13 13 H 1.48505 * 109.47090 * 239.99465 * 10 8 6 14 14 C 1.46904 * 111.00246 * 66.05841 * 4 3 2 15 15 N 1.46501 * 109.47159 * 81.03994 * 14 4 3 16 16 C 1.47111 * 124.34340 * 90.00495 * 15 14 4 17 17 C 1.53039 * 105.23536 * 195.74486 * 16 15 14 18 18 C 1.53084 * 112.04973 * 215.34434 * 17 16 15 19 19 C 1.54839 * 103.51343 * 237.35423 * 18 17 16 20 20 O 1.44553 * 104.87905 * 23.71081 * 19 18 17 21 21 C 1.44783 * 105.53461 * 320.44188 * 20 19 18 22 22 C 1.53174 * 103.35791 * 336.09777 * 17 16 15 23 23 C 1.34816 * 124.48161 * 269.99852 * 15 14 4 24 24 O 1.21280 * 124.91179 * 359.60303 * 23 15 14 25 25 H 1.07992 * 120.00548 * 0.02562 * 1 2 3 26 26 H 1.08006 * 119.99740 * 179.97438 * 1 2 3 27 27 H 1.08002 * 120.00606 * 179.97438 * 2 1 3 28 28 H 1.08994 * 109.46949 * 4.20508 * 3 2 1 29 29 H 1.08997 * 109.46639 * 244.20945 * 3 2 1 30 30 H 1.09001 * 109.46900 * 48.75468 * 5 4 3 31 31 H 1.08997 * 109.47298 * 168.75075 * 5 4 3 32 32 H 0.96999 * 119.99964 * 180.02562 * 9 8 6 33 33 H 1.09001 * 109.46667 * 321.03767 * 14 4 3 34 34 H 1.08994 * 109.46626 * 201.04685 * 14 4 3 35 35 H 1.08992 * 110.31086 * 76.77291 * 16 15 14 36 36 H 1.09004 * 110.31176 * 314.70810 * 16 15 14 37 37 H 1.08993 * 110.61083 * 355.85936 * 18 17 16 38 38 H 1.08995 * 110.61302 * 118.69048 * 18 17 16 39 39 H 1.08997 * 110.36138 * 142.56442 * 19 18 17 40 40 H 1.09008 * 110.35839 * 264.75235 * 19 18 17 41 41 H 1.09012 * 110.43344 * 280.35641 * 21 20 19 42 42 H 1.09001 * 110.43625 * 157.85203 * 21 20 19 43 43 H 1.09005 * 110.55024 * 141.89611 * 22 17 16 44 44 H 1.08999 * 110.55358 * 264.56001 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9826 1.3399 1.1454 5 6 2.2547 1.1694 2.4099 6 6 1.4529 2.4121 2.6996 7 1 1.4983 3.2536 2.0241 8 6 0.6616 2.4748 3.8269 9 7 0.6062 1.4499 4.6493 10 14 -0.3316 4.0155 4.1863 11 1 -0.0964 5.0171 3.1155 12 1 -1.7758 3.6732 4.2358 13 1 0.0880 4.5812 5.4937 14 6 4.0377 0.3275 1.0046 15 7 5.0856 0.8348 0.1153 16 6 6.2610 1.5954 0.5669 17 6 6.8338 2.2391 -0.6979 18 6 8.3627 2.3090 -0.6654 19 6 8.6596 3.8189 -0.8377 20 8 7.4609 4.4871 -0.3835 21 6 6.3602 3.6839 -0.8728 22 6 6.3251 1.3287 -1.8198 23 6 5.0994 0.6658 -1.2222 24 8 4.2539 0.0697 -1.8552 25 1 -0.5401 0.9352 -0.0004 26 1 -0.5400 -0.9354 -0.0004 27 1 1.8501 -0.9353 0.0004 28 1 1.3575 2.1322 0.0754 29 1 2.6323 1.3963 -0.9253 30 1 1.5834 0.3143 2.3303 31 1 2.9657 0.9990 3.2183 32 1 0.0492 1.4939 5.4422 33 1 3.6131 -0.5836 0.5832 34 1 4.4654 0.1102 1.9833 35 1 6.9948 0.9265 1.0164 36 1 5.9632 2.3636 1.2806 37 1 8.7429 1.9499 0.2909 38 1 8.7906 1.7351 -1.4872 39 1 9.5119 4.1103 -0.2239 40 1 8.8510 4.0506 -1.8855 41 1 6.1712 3.8977 -1.9249 42 1 5.4637 3.8650 -0.2797 43 1 6.0528 1.9170 -2.6961 44 1 7.0775 0.5839 -2.0790 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793560479.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:59:51 Heat of formation + Delta-G solvation = -40.459631 kcal Electronic energy + Delta-G solvation = -24858.405528 eV Core-core repulsion = 21390.757716 eV Total energy + Delta-G solvation = -3467.647811 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.06327 -38.86122 -37.08173 -35.91152 -33.14762 -32.78559 -31.53066 -30.01680 -28.08087 -27.38439 -26.28514 -25.18821 -23.46059 -22.79953 -21.01834 -20.07855 -19.72839 -18.58900 -16.64965 -16.45834 -16.28499 -15.83649 -15.61565 -15.41661 -15.04933 -14.71220 -14.45746 -14.12909 -13.83203 -13.74246 -13.44182 -12.82572 -12.57851 -12.50680 -12.17665 -12.12140 -11.94819 -11.60959 -11.48320 -11.21151 -11.01106 -10.91798 -10.84762 -10.69865 -10.61841 -10.46013 -9.99599 -9.90030 -9.56863 -9.30707 -8.62669 -8.57563 -8.39095 -7.33313 -6.02192 -4.02821 2.73074 3.01278 3.24914 3.31213 3.38994 3.44002 3.74065 4.10041 4.16297 4.42704 4.44420 4.66575 4.82938 4.89029 5.06285 5.22364 5.33905 5.37577 5.39618 5.40727 5.48530 5.54024 5.61968 5.62379 5.65971 5.71497 5.80170 5.84130 5.92124 5.97213 6.24427 6.51567 6.60484 6.67199 6.72346 7.13947 7.26450 7.35811 7.38653 7.47891 7.79559 8.02895 8.15254 8.37572 8.52444 9.04199 9.61110 11.08375 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.015806 B = 0.004738 C = 0.004001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.031493 B = 5907.855699 C = 6997.308002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.169 4.169 3 C 0.093 3.907 4 N -0.543 5.543 5 C 0.195 3.805 6 C -0.500 4.500 7 H 0.062 0.938 8 C 0.057 3.943 9 N -0.898 5.898 10 Si 0.895 3.105 11 H -0.272 1.272 12 H -0.285 1.285 13 H -0.285 1.285 14 C 0.282 3.718 15 N -0.602 5.602 16 C 0.121 3.879 17 C -0.107 4.107 18 C -0.139 4.139 19 C 0.044 3.956 20 O -0.372 6.372 21 C 0.060 3.940 22 C -0.141 4.141 23 C 0.514 3.486 24 O -0.532 6.532 25 H 0.096 0.904 26 H 0.084 0.916 27 H 0.094 0.906 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.006 0.994 31 H 0.025 0.975 32 H 0.260 0.740 33 H 0.058 0.942 34 H 0.085 0.915 35 H 0.071 0.929 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.091 0.909 40 H 0.059 0.941 41 H 0.064 0.936 42 H 0.105 0.895 43 H 0.101 0.899 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.671 -0.067 -11.117 19.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.189 4.189 3 C -0.035 4.035 4 N -0.268 5.268 5 C 0.070 3.930 6 C -0.538 4.538 7 H 0.080 0.920 8 C -0.144 4.144 9 N -0.538 5.538 10 Si 0.723 3.277 11 H -0.197 1.197 12 H -0.212 1.212 13 H -0.211 1.211 14 C 0.071 3.929 15 N -0.337 5.337 16 C -0.003 4.003 17 C -0.108 4.108 18 C -0.177 4.177 19 C -0.033 4.033 20 O -0.291 6.291 21 C -0.017 4.017 22 C -0.181 4.181 23 C 0.301 3.699 24 O -0.409 6.409 25 H 0.114 0.886 26 H 0.103 0.897 27 H 0.112 0.888 28 H 0.098 0.902 29 H 0.085 0.915 30 H 0.024 0.976 31 H 0.043 0.957 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.103 0.897 35 H 0.089 0.911 36 H 0.109 0.891 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.109 0.891 40 H 0.077 0.923 41 H 0.082 0.918 42 H 0.123 0.877 43 H 0.119 0.881 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 15.297 0.196 -11.055 18.875 hybrid contribution -0.961 -0.261 0.326 1.048 sum 14.336 -0.065 -10.729 17.906 Atomic orbital electron populations 1.23639 0.95972 1.00989 1.01510 1.23414 0.96544 0.99609 0.99283 1.21231 0.94625 0.94293 0.93360 1.62139 1.13078 1.46842 1.04711 1.19756 0.92398 0.97301 0.83531 1.21108 1.24952 1.00368 1.07419 0.92012 1.24941 0.96944 0.96369 0.96178 1.69960 1.40284 1.30095 1.13485 0.86490 0.79756 0.83277 0.78195 1.19703 1.21159 1.21076 1.21870 0.86135 0.92004 0.92882 1.48687 1.22973 1.54800 1.07220 1.22001 0.87027 0.95553 0.95678 1.21893 0.96124 0.96697 0.96065 1.22868 0.93377 0.97711 1.03712 1.23479 0.89320 0.90879 0.99650 1.89239 1.14822 1.48854 1.76155 1.23410 0.91342 0.86897 1.00019 1.22321 0.97558 0.99658 0.98544 1.20957 0.86692 0.79668 0.82580 1.90720 1.42156 1.43214 1.64792 0.88604 0.89741 0.88781 0.90234 0.91505 0.97581 0.95679 0.93048 0.92420 0.89676 0.91089 0.89093 0.89790 0.89842 0.89090 0.92320 0.91788 0.87654 0.88070 0.87799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.50 14.32 29.02 0.42 -3.09 16 2 C -0.17 -3.37 7.35 -36.02 -0.26 -3.63 16 3 C 0.09 1.91 5.60 -4.97 -0.03 1.88 16 4 N -0.54 -11.41 4.76 -241.43 -1.15 -12.56 16 5 C 0.19 4.89 4.55 -4.98 -0.02 4.87 16 6 C -0.50 -13.73 8.59 -34.44 -0.30 -14.03 16 7 H 0.06 1.71 7.50 -52.49 -0.39 1.32 16 8 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 9 N -0.90 -26.30 13.29 55.43 0.74 -25.56 16 10 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 11 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 14 C 0.28 5.02 5.65 -63.31 -0.36 4.66 16 15 N -0.60 -9.00 3.16 -176.26 -0.56 -9.56 16 16 C 0.12 1.42 6.38 -3.69 -0.02 1.40 16 17 C -0.11 -1.04 0.91 -154.33 -0.14 -1.18 16 18 C -0.14 -0.99 6.38 -25.72 -0.16 -1.15 16 19 C 0.04 0.35 7.67 38.13 0.29 0.64 16 20 O -0.37 -4.42 11.66 -35.23 -0.41 -4.83 16 21 C 0.06 0.67 6.76 37.18 0.25 0.92 16 22 C -0.14 -1.44 5.98 -27.34 -0.16 -1.60 16 23 C 0.51 7.75 7.32 -10.51 -0.08 7.67 16 24 O -0.53 -10.00 16.19 5.56 0.09 -9.91 16 25 H 0.10 1.85 7.84 -52.49 -0.41 1.43 16 26 H 0.08 1.45 8.06 -52.48 -0.42 1.03 16 27 H 0.09 1.85 6.76 -52.49 -0.35 1.49 16 28 H 0.08 1.75 6.96 -51.93 -0.36 1.39 16 29 H 0.07 1.36 5.76 -51.93 -0.30 1.06 16 30 H 0.01 0.17 6.65 -51.93 -0.35 -0.17 16 31 H 0.03 0.66 7.66 -51.93 -0.40 0.27 16 32 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 33 H 0.06 1.07 5.92 -51.93 -0.31 0.77 16 34 H 0.09 1.45 7.56 -51.93 -0.39 1.06 16 35 H 0.07 0.70 7.62 -51.93 -0.40 0.31 16 36 H 0.09 1.22 7.72 -51.93 -0.40 0.82 16 37 H 0.08 0.55 7.50 -51.93 -0.39 0.16 16 38 H 0.08 0.45 7.49 -51.93 -0.39 0.06 16 39 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.40 8.14 -51.92 -0.42 -0.02 16 41 H 0.06 0.64 7.53 -51.92 -0.39 0.25 16 42 H 0.11 1.38 7.70 -51.93 -0.40 0.98 16 43 H 0.10 0.96 7.50 -51.93 -0.39 0.57 16 44 H 0.10 0.85 7.61 -51.93 -0.40 0.46 16 LS Contribution 348.77 15.07 5.26 5.26 Total: -1.00 -31.86 348.77 -8.55 -40.40 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -6.82 Total: 1.33 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: -0.68 Total: -1.15 kcal Atomic # 7 Polarization: -46.71 SS G_CDS: -0.97 Total: -47.68 kcal Atomic # 8 Polarization: -14.42 SS G_CDS: -0.32 Total: -14.74 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.86 -8.55 -40.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793560479.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.055 kcal (2) G-P(sol) polarization free energy of solvation -31.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds