Wall clock time and date at job start Tue Mar 31 2020 02:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50708 * 119.99680 * 2 1 4 4 N 1.46901 * 109.46789 * 124.20868 * 3 2 1 5 5 C 1.46899 * 111.00208 * 302.09773 * 4 3 2 6 6 C 1.50700 * 109.47395 * 288.75729 * 5 4 3 7 7 H 1.08000 * 119.99431 * 358.64936 * 6 5 4 8 8 C 1.37874 * 119.99946 * 178.66136 * 6 5 4 9 9 N 1.31516 * 120.00222 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99808 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47025 * 359.97438 * 10 8 6 12 12 H 1.48503 * 109.47575 * 119.99540 * 10 8 6 13 13 H 1.48505 * 109.47090 * 239.99465 * 10 8 6 14 14 C 1.46904 * 111.00246 * 66.05841 * 4 3 2 15 15 N 1.46501 * 109.47159 * 81.03994 * 14 4 3 16 16 C 1.47111 * 124.34340 * 90.00495 * 15 14 4 17 17 C 1.53039 * 105.23536 * 195.74486 * 16 15 14 18 18 C 1.53084 * 112.04973 * 215.34434 * 17 16 15 19 19 C 1.54839 * 103.51343 * 237.35423 * 18 17 16 20 20 O 1.44553 * 104.87905 * 23.71081 * 19 18 17 21 21 C 1.44783 * 105.53461 * 320.44188 * 20 19 18 22 22 C 1.53174 * 103.35791 * 336.09777 * 17 16 15 23 23 C 1.34816 * 124.48161 * 269.99852 * 15 14 4 24 24 O 1.21280 * 124.91179 * 359.60303 * 23 15 14 25 25 H 1.07992 * 120.00548 * 0.02562 * 1 2 3 26 26 H 1.08006 * 119.99740 * 179.97438 * 1 2 3 27 27 H 1.08002 * 120.00606 * 179.97438 * 2 1 3 28 28 H 1.08994 * 109.46949 * 4.20508 * 3 2 1 29 29 H 1.08997 * 109.46639 * 244.20945 * 3 2 1 30 30 H 1.09001 * 109.46900 * 48.75468 * 5 4 3 31 31 H 1.08997 * 109.47298 * 168.75075 * 5 4 3 32 32 H 0.96999 * 119.99964 * 180.02562 * 9 8 6 33 33 H 1.09001 * 109.46667 * 321.03767 * 14 4 3 34 34 H 1.08994 * 109.46626 * 201.04685 * 14 4 3 35 35 H 1.08992 * 110.31086 * 76.77291 * 16 15 14 36 36 H 1.09004 * 110.31176 * 314.70810 * 16 15 14 37 37 H 1.08993 * 110.61083 * 355.85936 * 18 17 16 38 38 H 1.08995 * 110.61302 * 118.69048 * 18 17 16 39 39 H 1.08997 * 110.36138 * 142.56442 * 19 18 17 40 40 H 1.09008 * 110.35839 * 264.75235 * 19 18 17 41 41 H 1.09012 * 110.43344 * 280.35641 * 21 20 19 42 42 H 1.09001 * 110.43625 * 157.85203 * 21 20 19 43 43 H 1.09005 * 110.55024 * 141.89611 * 22 17 16 44 44 H 1.08999 * 110.55358 * 264.56001 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9826 1.3399 1.1454 5 6 2.2547 1.1694 2.4099 6 6 1.4529 2.4121 2.6996 7 1 1.4983 3.2536 2.0241 8 6 0.6616 2.4748 3.8269 9 7 0.6062 1.4499 4.6493 10 14 -0.3316 4.0155 4.1863 11 1 -0.0964 5.0171 3.1155 12 1 -1.7758 3.6732 4.2358 13 1 0.0880 4.5812 5.4937 14 6 4.0377 0.3275 1.0046 15 7 5.0856 0.8348 0.1153 16 6 6.2610 1.5954 0.5669 17 6 6.8338 2.2391 -0.6979 18 6 8.3627 2.3090 -0.6654 19 6 8.6596 3.8189 -0.8377 20 8 7.4609 4.4871 -0.3835 21 6 6.3602 3.6839 -0.8728 22 6 6.3251 1.3287 -1.8198 23 6 5.0994 0.6658 -1.2222 24 8 4.2539 0.0697 -1.8552 25 1 -0.5401 0.9352 -0.0004 26 1 -0.5400 -0.9354 -0.0004 27 1 1.8501 -0.9353 0.0004 28 1 1.3575 2.1322 0.0754 29 1 2.6323 1.3963 -0.9253 30 1 1.5834 0.3143 2.3303 31 1 2.9657 0.9990 3.2183 32 1 0.0492 1.4939 5.4422 33 1 3.6131 -0.5836 0.5832 34 1 4.4654 0.1102 1.9833 35 1 6.9948 0.9265 1.0164 36 1 5.9632 2.3636 1.2806 37 1 8.7429 1.9499 0.2909 38 1 8.7906 1.7351 -1.4872 39 1 9.5119 4.1103 -0.2239 40 1 8.8510 4.0506 -1.8855 41 1 6.1712 3.8977 -1.9249 42 1 5.4637 3.8650 -0.2797 43 1 6.0528 1.9170 -2.6961 44 1 7.0775 0.5839 -2.0790 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000793560479.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:59:51 Heat of formation + Delta-G solvation = -62.401338 kcal Electronic energy + Delta-G solvation = -24859.356992 eV Core-core repulsion = 21390.757716 eV Total energy + Delta-G solvation = -3468.599275 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.04975 -39.92330 -38.69678 -37.04830 -34.85917 -34.36016 -33.02290 -30.82685 -29.26670 -28.98539 -27.71886 -26.51217 -25.06984 -23.53249 -22.79397 -21.22456 -20.78352 -20.05407 -18.41791 -17.63048 -17.41004 -17.26305 -16.76054 -16.60018 -16.26230 -16.07504 -15.82727 -15.66340 -15.28737 -14.91087 -14.48374 -14.27139 -14.03234 -13.78355 -13.49693 -13.24418 -13.02396 -12.93986 -12.80213 -12.66647 -12.59477 -12.38065 -12.26780 -12.21880 -12.01801 -11.75377 -11.58728 -11.37710 -10.74808 -10.67217 -10.60044 -10.22811 -9.83547 -9.08042 -8.17676 -6.25999 1.38413 1.39879 1.41388 1.53086 1.57516 2.05394 2.41538 3.00338 3.15266 3.27839 3.32277 3.41334 3.55277 3.93670 4.01291 4.04145 4.08827 4.25866 4.30862 4.37019 4.49954 4.54033 4.62634 4.66618 4.71485 4.74689 4.85497 4.88306 4.91163 4.96067 5.01225 5.13738 5.16865 5.19346 5.22807 5.47774 5.66148 5.68737 5.85286 5.89520 6.03502 6.17238 6.34647 6.54590 6.87611 7.18304 7.42699 8.92520 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.015806 B = 0.004738 C = 0.004001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.031493 B = 5907.855699 C = 6997.308002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.182 4.182 3 C 0.103 3.897 4 N -0.546 5.546 5 C 0.214 3.786 6 C -0.512 4.512 7 H 0.054 0.946 8 C 0.009 3.991 9 N -0.930 5.930 10 Si 0.960 3.040 11 H -0.268 1.268 12 H -0.280 1.280 13 H -0.278 1.278 14 C 0.286 3.714 15 N -0.606 5.606 16 C 0.118 3.882 17 C -0.096 4.096 18 C -0.129 4.129 19 C 0.037 3.963 20 O -0.401 6.401 21 C 0.059 3.941 22 C -0.125 4.125 23 C 0.503 3.497 24 O -0.575 6.575 25 H 0.092 0.908 26 H 0.106 0.894 27 H 0.097 0.903 28 H 0.060 0.940 29 H 0.069 0.931 30 H -0.017 1.017 31 H 0.007 0.993 32 H 0.263 0.737 33 H 0.049 0.951 34 H 0.090 0.910 35 H 0.098 0.902 36 H 0.069 0.931 37 H 0.093 0.907 38 H 0.112 0.888 39 H 0.104 0.896 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.114 0.886 44 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.473 0.301 -12.144 21.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.202 4.202 3 C -0.025 4.025 4 N -0.271 5.271 5 C 0.088 3.912 6 C -0.551 4.551 7 H 0.072 0.928 8 C -0.189 4.189 9 N -0.571 5.571 10 Si 0.785 3.215 11 H -0.193 1.193 12 H -0.206 1.206 13 H -0.204 1.204 14 C 0.074 3.926 15 N -0.339 5.339 16 C -0.005 4.005 17 C -0.097 4.097 18 C -0.166 4.166 19 C -0.040 4.040 20 O -0.321 6.321 21 C -0.018 4.018 22 C -0.164 4.164 23 C 0.292 3.708 24 O -0.455 6.455 25 H 0.110 0.890 26 H 0.125 0.875 27 H 0.115 0.885 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.001 0.999 31 H 0.025 0.975 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.108 0.892 35 H 0.116 0.884 36 H 0.087 0.913 37 H 0.112 0.888 38 H 0.131 0.869 39 H 0.122 0.878 40 H 0.092 0.908 41 H 0.094 0.906 42 H 0.092 0.908 43 H 0.132 0.868 44 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 17.147 0.580 -12.094 20.991 hybrid contribution -1.487 -0.377 0.637 1.662 sum 15.660 0.203 -11.457 19.404 Atomic orbital electron populations 1.23826 0.95788 1.01899 1.00124 1.23396 0.96963 0.99279 1.00545 1.21059 0.94265 0.94078 0.93095 1.62067 1.13294 1.48379 1.03324 1.19358 0.91503 0.95555 0.84829 1.21341 1.25449 1.00852 1.07442 0.92801 1.25724 0.97917 0.99308 0.95940 1.70064 1.41100 1.31966 1.13974 0.85480 0.78252 0.79633 0.78127 1.19259 1.20589 1.20384 1.21709 0.86020 0.91049 0.93807 1.48720 1.22943 1.54942 1.07304 1.22210 0.86288 0.95357 0.96598 1.21823 0.98109 0.95296 0.94468 1.22881 0.90740 0.97497 1.05510 1.23743 0.88191 0.91182 1.00840 1.89213 1.16197 1.49860 1.76799 1.23344 0.90480 0.87983 0.99981 1.22346 0.95591 1.00003 0.98485 1.21868 0.87650 0.78958 0.82305 1.90692 1.44127 1.45102 1.65549 0.88976 0.87536 0.88516 0.92170 0.91268 0.99879 0.97524 0.92805 0.93292 0.89232 0.88444 0.91259 0.88847 0.86944 0.87832 0.90763 0.90552 0.90836 0.86791 0.84547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.86 14.32 67.78 0.97 -5.89 16 2 C -0.18 -7.44 7.35 25.65 0.19 -7.25 16 3 C 0.10 4.37 5.60 85.56 0.48 4.85 16 4 N -0.55 -23.74 4.76 -917.75 -4.37 -28.11 16 5 C 0.21 11.10 4.55 85.56 0.39 11.49 16 6 C -0.51 -28.81 8.59 25.60 0.22 -28.59 16 7 H 0.05 3.06 7.50 -2.91 -0.02 3.04 16 8 C 0.01 0.53 5.46 84.65 0.46 0.99 16 9 N -0.93 -55.18 13.29 21.45 0.28 -54.89 16 10 Si 0.96 44.58 29.54 68.60 2.03 46.61 16 11 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 12 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 13 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 14 C 0.29 10.43 5.65 170.80 0.97 11.39 16 15 N -0.61 -17.93 3.16 -829.94 -2.63 -20.56 16 16 C 0.12 2.63 6.38 86.28 0.55 3.18 16 17 C -0.10 -1.64 0.91 -52.07 -0.05 -1.69 16 18 C -0.13 -1.31 6.38 31.25 0.20 -1.11 16 19 C 0.04 0.47 7.67 72.61 0.56 1.03 16 20 O -0.40 -9.02 11.66 -148.98 -1.74 -10.75 16 21 C 0.06 1.25 6.76 72.00 0.49 1.74 16 22 C -0.12 -2.17 5.98 30.20 0.18 -1.99 16 23 C 0.50 14.70 7.32 87.95 0.64 15.34 16 24 O -0.57 -21.57 16.19 -3.03 -0.05 -21.61 16 25 H 0.09 3.59 7.84 -2.91 -0.02 3.57 16 26 H 0.11 3.58 8.06 -2.91 -0.02 3.56 16 27 H 0.10 3.88 6.76 -2.91 -0.02 3.86 16 28 H 0.06 2.75 6.96 -2.39 -0.02 2.74 16 29 H 0.07 2.90 5.76 -2.39 -0.01 2.88 16 30 H -0.02 -0.93 6.65 -2.39 -0.02 -0.94 16 31 H 0.01 0.37 7.66 -2.39 -0.02 0.35 16 32 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 33 H 0.05 1.88 5.92 -2.39 -0.01 1.86 16 34 H 0.09 3.14 7.56 -2.39 -0.02 3.12 16 35 H 0.10 1.68 7.62 -2.39 -0.02 1.66 16 36 H 0.07 1.87 7.72 -2.38 -0.02 1.86 16 37 H 0.09 0.84 7.50 -2.39 -0.02 0.82 16 38 H 0.11 0.58 7.49 -2.39 -0.02 0.56 16 39 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 41 H 0.08 1.41 7.53 -2.38 -0.02 1.39 16 42 H 0.07 2.01 7.70 -2.39 -0.02 1.99 16 43 H 0.11 1.79 7.50 -2.38 -0.02 1.77 16 44 H 0.14 1.58 7.61 -2.39 -0.02 1.56 16 Total: -1.00 -70.59 348.77 0.76 -69.84 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: 0.98 Total: 15.99 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: 6.24 Total: 3.49 kcal Atomic # 7 Polarization: -96.84 SS G_CDS: -6.71 Total: -103.55 kcal Atomic # 8 Polarization: -30.58 SS G_CDS: -1.79 Total: -32.37 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -70.59 0.76 -69.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793560479.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.435 kcal (2) G-P(sol) polarization free energy of solvation -70.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds