Wall clock time and date at job start Tue Mar 31 2020 03:24:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.36937 * 119.99779 * 2 1 4 4 H 1.08005 * 119.99782 * 172.94466 * 3 2 1 5 5 C 1.38803 * 120.00214 * 352.94838 * 3 2 1 6 6 N 1.31617 * 119.99907 * 8.34586 * 5 3 2 7 7 Si 1.86804 * 120.00208 * 188.34643 * 5 3 2 8 8 H 1.48502 * 109.46967 * 0.02562 * 7 5 3 9 9 H 1.48499 * 109.47120 * 119.99850 * 7 5 3 10 10 H 1.48497 * 109.47102 * 239.99861 * 7 5 3 11 11 C 1.46504 * 120.00287 * 180.02562 * 2 1 3 12 12 N 1.46498 * 109.46999 * 261.00674 * 11 2 1 13 13 C 1.36093 * 132.34295 * 279.56082 * 12 11 2 14 14 O 1.21282 * 134.42337 * 0.02562 * 13 12 11 15 15 C 1.50582 * 91.14451 * 179.97438 * 13 12 11 16 16 C 1.52858 * 121.27087 * 234.42634 * 15 13 12 17 17 C 1.53960 * 86.87147 * 258.95150 * 16 15 13 18 18 C 1.53166 * 121.28779 * 125.70959 * 15 13 12 19 19 C 1.47600 * 132.34409 * 99.53656 * 12 11 2 20 20 H 1.09000 * 113.78624 * 65.73941 * 19 12 11 21 21 C 1.53000 * 113.78503 * 294.29770 * 19 12 11 22 22 H 1.09004 * 109.82282 * 315.36966 * 21 19 12 23 23 C 1.54373 * 109.83393 * 194.38625 * 21 19 12 24 24 C 1.55302 * 102.25468 * 219.12874 * 23 21 19 25 25 C 1.54950 * 100.94250 * 34.13135 * 24 23 21 26 26 O 1.43241 * 109.82799 * 76.24730 * 21 19 12 27 27 H 1.09012 * 109.46893 * 183.53184 * 1 2 3 28 28 H 1.08994 * 109.47526 * 303.53142 * 1 2 3 29 29 H 1.09007 * 109.47607 * 63.53754 * 1 2 3 30 30 H 0.97006 * 120.00372 * 180.02562 * 6 5 3 31 31 H 1.08998 * 109.47289 * 141.00563 * 11 2 1 32 32 H 1.08998 * 109.47208 * 21.00443 * 11 2 1 33 33 H 1.09002 * 113.66280 * 144.43160 * 16 15 13 34 34 H 1.09004 * 113.66550 * 13.46756 * 16 15 13 35 35 H 1.08999 * 113.58095 * 89.86248 * 17 16 15 36 36 H 1.09003 * 113.57434 * 220.57396 * 17 16 15 37 37 H 1.08999 * 113.67224 * 346.56198 * 18 15 13 38 38 H 1.09003 * 113.74471 * 215.51277 * 18 15 13 39 39 H 1.08998 * 110.85127 * 337.32056 * 23 21 19 40 40 H 1.09002 * 110.85141 * 100.94170 * 23 21 19 41 41 H 1.08999 * 111.12476 * 276.21517 * 24 23 21 42 42 H 1.09000 * 111.16517 * 152.06492 * 24 23 21 43 43 H 1.08997 * 110.31158 * 204.64024 * 25 24 23 44 44 H 1.08996 * 110.31047 * 82.46849 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.2235 1.1895 0.1149 5 6 1.4634 2.3835 -0.1476 6 7 0.1475 2.3953 -0.1226 7 14 2.4076 3.9782 -0.3817 8 1 3.8655 3.6961 -0.3737 9 1 2.0296 4.5912 -1.6804 10 1 2.0781 4.9151 0.7224 11 6 2.1975 -1.2687 -0.0006 12 7 2.6286 -1.5842 1.3635 13 6 3.6756 -1.1509 2.1173 14 8 4.5909 -0.3767 1.9336 15 6 3.2424 -2.0164 3.2709 16 6 3.0057 -1.4258 4.6608 17 6 4.3922 -1.9779 5.0391 18 6 4.2034 -3.0174 3.9192 19 6 2.0781 -2.4820 2.3976 20 1 2.1227 -3.5382 2.1319 21 6 0.7053 -2.0532 2.9198 22 1 0.7006 -0.9798 3.1089 23 6 0.3775 -2.8176 4.2203 24 6 -1.1376 -3.1156 4.0545 25 6 -1.2304 -3.3242 2.5220 26 8 -0.3045 -2.3816 1.9584 27 1 -0.3633 -1.0258 0.0633 28 1 -0.3634 0.5676 0.8566 29 1 -0.3634 0.4580 -0.9200 30 1 -0.3321 3.2322 -0.2261 31 1 3.0708 -1.1837 -0.6472 32 1 1.5484 -2.0629 -0.3693 33 1 2.1848 -1.8962 5.2020 34 1 2.9508 -0.3371 4.6701 35 1 5.2063 -1.2779 4.8515 36 1 4.4305 -2.4131 6.0377 37 1 5.1053 -3.1996 3.3348 38 1 3.7211 -3.9365 4.2520 39 1 0.9504 -3.7428 4.2815 40 1 0.5562 -2.1910 5.0942 41 1 -1.7422 -2.2662 4.3726 42 1 -1.4219 -4.0202 4.5920 43 1 -2.2417 -3.1165 2.1723 44 1 -0.9404 -4.3418 2.2604 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000811740783.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:17 Heat of formation + Delta-G solvation = 13.791390 kcal Electronic energy + Delta-G solvation = -25888.304954 eV Core-core repulsion = 22423.009644 eV Total energy + Delta-G solvation = -3465.295311 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.18485 -38.81800 -36.81415 -35.84182 -34.64254 -32.06099 -31.16206 -29.73967 -27.53455 -25.77513 -25.71579 -24.45623 -23.82641 -21.73450 -21.53142 -20.77017 -19.82601 -17.34714 -16.95841 -16.69901 -16.14376 -16.00410 -15.65284 -15.13637 -14.67946 -14.58522 -13.80220 -13.75324 -13.34603 -13.22767 -13.02298 -12.86111 -12.56089 -12.16106 -11.85708 -11.76888 -11.60841 -11.35795 -11.22602 -11.07762 -10.88383 -10.78835 -10.69864 -10.62329 -10.32246 -10.24748 -10.07522 -9.88094 -9.69783 -9.31160 -9.04451 -8.45603 -8.02374 -6.95902 -5.58147 -3.01875 3.11158 3.42775 3.51793 3.57662 3.58819 4.04789 4.28910 4.50465 4.58423 4.60640 4.71737 4.78641 4.88172 4.96384 5.11706 5.26274 5.32348 5.35740 5.52189 5.56807 5.57670 5.66792 5.70934 5.73744 5.76737 5.85687 5.89520 5.92183 6.00991 6.03371 6.15574 6.22628 6.35716 6.42002 6.52091 7.06228 7.24534 7.40113 7.49881 7.82005 7.90290 8.05260 8.45663 9.03369 9.34660 9.94491 10.35652 11.39277 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.014210 B = 0.006807 C = 0.005275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.981435 B = 4112.682553 C = 5306.400250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.169 3.831 2 N -0.589 5.589 3 C -0.247 4.247 4 H 0.079 0.921 5 C -0.001 4.001 6 N -0.913 5.913 7 Si 0.906 3.094 8 H -0.277 1.277 9 H -0.290 1.290 10 H -0.292 1.292 11 C 0.364 3.636 12 N -0.618 5.618 13 C 0.547 3.453 14 O -0.509 6.509 15 C -0.147 4.147 16 C -0.120 4.120 17 C -0.136 4.136 18 C -0.108 4.108 19 C 0.131 3.869 20 H 0.089 0.911 21 C 0.090 3.910 22 H 0.089 0.911 23 C -0.149 4.149 24 C -0.156 4.156 25 C 0.047 3.953 26 O -0.356 6.356 27 H 0.008 0.992 28 H 0.042 0.958 29 H 0.034 0.966 30 H 0.248 0.752 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.096 0.904 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.088 0.912 39 H 0.077 0.923 40 H 0.085 0.915 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.082 0.918 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.728 -15.889 11.095 19.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.311 5.311 3 C -0.376 4.376 4 H 0.097 0.903 5 C -0.197 4.197 6 N -0.561 5.561 7 Si 0.736 3.264 8 H -0.202 1.202 9 H -0.217 1.217 10 H -0.219 1.219 11 C 0.156 3.844 12 N -0.360 5.360 13 C 0.331 3.669 14 O -0.383 6.383 15 C -0.151 4.151 16 C -0.158 4.158 17 C -0.174 4.174 18 C -0.146 4.146 19 C 0.025 3.975 20 H 0.106 0.894 21 C 0.031 3.969 22 H 0.107 0.893 23 C -0.187 4.187 24 C -0.193 4.193 25 C -0.030 4.030 26 O -0.275 6.275 27 H 0.027 0.973 28 H 0.061 0.939 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.114 0.886 34 H 0.093 0.907 35 H 0.103 0.897 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.106 0.894 39 H 0.096 0.904 40 H 0.104 0.896 41 H 0.096 0.904 42 H 0.097 0.903 43 H 0.100 0.900 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.453 -15.126 10.430 18.379 hybrid contribution 0.237 0.906 0.107 0.942 sum -0.216 -14.220 10.538 17.700 Atomic orbital electron populations 1.21091 0.81005 0.94190 1.01206 1.44843 1.03169 1.01126 1.81932 1.19501 0.91815 0.83866 1.42425 0.90340 1.24888 0.95626 0.97966 1.01234 1.70292 1.05102 1.24757 1.55913 0.86132 0.79394 0.83584 0.77302 1.20240 1.21654 1.21872 1.20895 0.94438 0.88031 0.81012 1.53331 1.25466 1.42083 1.15094 1.21222 0.81444 0.80077 0.84123 1.90666 1.32544 1.36123 1.78917 1.23828 0.96593 0.98913 0.95781 1.22821 0.98071 1.01679 0.93238 1.22832 0.97846 0.98581 0.98117 1.22597 0.98551 0.96399 0.97056 1.22548 0.92521 0.95132 0.87282 0.89365 1.22842 0.86942 1.00076 0.87049 0.89333 1.23258 0.96063 1.01020 0.98385 1.23267 0.96487 1.02502 0.97085 1.23354 0.94352 0.93176 0.92069 1.88630 1.39026 1.62001 1.37849 0.97343 0.93905 0.94710 0.94140 0.92110 0.91249 0.88557 0.90694 0.89737 0.91271 0.90982 0.89370 0.90412 0.89611 0.90368 0.90298 0.90021 0.92774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.36 8.85 59.84 0.53 4.89 16 2 N -0.59 -15.40 3.17 -184.86 -0.59 -15.99 16 3 C -0.25 -7.23 9.85 -15.06 -0.15 -7.38 16 4 H 0.08 2.40 7.84 -52.48 -0.41 1.99 16 5 C 0.00 -0.02 5.45 -17.43 -0.09 -0.12 16 6 N -0.91 -27.41 9.48 55.49 0.53 -26.88 16 7 Si 0.91 23.52 29.56 -169.99 -5.03 18.50 16 8 H -0.28 -7.22 7.11 56.52 0.40 -6.82 16 9 H -0.29 -7.44 7.11 56.52 0.40 -7.03 16 10 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 11 C 0.36 7.94 7.27 -63.75 -0.46 7.47 16 12 N -0.62 -12.22 3.39 -179.64 -0.61 -12.83 16 13 C 0.55 11.33 9.38 -10.52 -0.10 11.23 16 14 O -0.51 -12.61 18.03 5.56 0.10 -12.51 16 15 C -0.15 -2.17 1.22 -155.94 -0.19 -2.36 16 16 C -0.12 -1.54 6.84 -26.30 -0.18 -1.72 16 17 C -0.14 -1.54 8.08 -25.74 -0.21 -1.75 16 18 C -0.11 -1.23 7.86 -26.15 -0.21 -1.43 16 19 C 0.13 1.98 3.97 -67.50 -0.27 1.71 16 20 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 21 C 0.09 1.33 3.08 -26.01 -0.08 1.25 16 22 H 0.09 1.65 8.08 -51.93 -0.42 1.23 16 23 C -0.15 -1.52 5.05 -24.79 -0.13 -1.65 16 24 C -0.16 -1.48 7.16 -24.48 -0.18 -1.65 16 25 C 0.05 0.54 7.78 38.19 0.30 0.84 16 26 O -0.36 -5.74 9.31 -35.23 -0.33 -6.07 16 27 H 0.01 0.19 6.10 -51.92 -0.32 -0.13 16 28 H 0.04 1.22 7.01 -51.93 -0.36 0.85 16 29 H 0.03 0.97 7.09 -51.93 -0.37 0.60 16 30 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 31 H 0.06 1.35 8.11 -51.93 -0.42 0.93 16 32 H 0.07 1.37 7.77 -51.93 -0.40 0.96 16 33 H 0.10 0.98 4.74 -51.93 -0.25 0.73 16 34 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.08 0.67 7.85 -51.93 -0.41 0.26 16 40 H 0.09 0.80 6.31 -51.93 -0.33 0.47 16 41 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 346.74 15.07 5.23 5.23 Total: -1.00 -34.13 346.74 -9.16 -43.29 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -7.05 Total: -2.06 kcal Atomic # 6 Polarization: 10.74 SS G_CDS: -1.41 Total: 9.33 kcal Atomic # 7 Polarization: -55.04 SS G_CDS: -0.67 Total: -55.71 kcal Atomic # 8 Polarization: -18.35 SS G_CDS: -0.23 Total: -18.58 kcal Atomic # 14 Polarization: 23.52 SS G_CDS: -5.03 Total: 18.50 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -34.13 -9.16 -43.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811740783.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.077 kcal (2) G-P(sol) polarization free energy of solvation -34.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds