Wall clock time and date at job start Tue Mar 31 2020 03:24:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.36937 * 119.99779 * 2 1 4 4 H 1.08005 * 119.99782 * 172.94466 * 3 2 1 5 5 C 1.38803 * 120.00214 * 352.94838 * 3 2 1 6 6 N 1.31617 * 119.99907 * 8.34586 * 5 3 2 7 7 Si 1.86804 * 120.00208 * 188.34643 * 5 3 2 8 8 H 1.48502 * 109.46967 * 0.02562 * 7 5 3 9 9 H 1.48499 * 109.47120 * 119.99850 * 7 5 3 10 10 H 1.48497 * 109.47102 * 239.99861 * 7 5 3 11 11 C 1.46504 * 120.00287 * 180.02562 * 2 1 3 12 12 N 1.46498 * 109.46999 * 261.00674 * 11 2 1 13 13 C 1.36093 * 132.34295 * 279.56082 * 12 11 2 14 14 O 1.21282 * 134.42337 * 0.02562 * 13 12 11 15 15 C 1.50582 * 91.14451 * 179.97438 * 13 12 11 16 16 C 1.52858 * 121.27087 * 234.42634 * 15 13 12 17 17 C 1.53960 * 86.87147 * 258.95150 * 16 15 13 18 18 C 1.53166 * 121.28779 * 125.70959 * 15 13 12 19 19 C 1.47600 * 132.34409 * 99.53656 * 12 11 2 20 20 H 1.09000 * 113.78624 * 65.73941 * 19 12 11 21 21 C 1.53000 * 113.78503 * 294.29770 * 19 12 11 22 22 H 1.09004 * 109.82282 * 315.36966 * 21 19 12 23 23 C 1.54373 * 109.83393 * 194.38625 * 21 19 12 24 24 C 1.55302 * 102.25468 * 219.12874 * 23 21 19 25 25 C 1.54950 * 100.94250 * 34.13135 * 24 23 21 26 26 O 1.43241 * 109.82799 * 76.24730 * 21 19 12 27 27 H 1.09012 * 109.46893 * 183.53184 * 1 2 3 28 28 H 1.08994 * 109.47526 * 303.53142 * 1 2 3 29 29 H 1.09007 * 109.47607 * 63.53754 * 1 2 3 30 30 H 0.97006 * 120.00372 * 180.02562 * 6 5 3 31 31 H 1.08998 * 109.47289 * 141.00563 * 11 2 1 32 32 H 1.08998 * 109.47208 * 21.00443 * 11 2 1 33 33 H 1.09002 * 113.66280 * 144.43160 * 16 15 13 34 34 H 1.09004 * 113.66550 * 13.46756 * 16 15 13 35 35 H 1.08999 * 113.58095 * 89.86248 * 17 16 15 36 36 H 1.09003 * 113.57434 * 220.57396 * 17 16 15 37 37 H 1.08999 * 113.67224 * 346.56198 * 18 15 13 38 38 H 1.09003 * 113.74471 * 215.51277 * 18 15 13 39 39 H 1.08998 * 110.85127 * 337.32056 * 23 21 19 40 40 H 1.09002 * 110.85141 * 100.94170 * 23 21 19 41 41 H 1.08999 * 111.12476 * 276.21517 * 24 23 21 42 42 H 1.09000 * 111.16517 * 152.06492 * 24 23 21 43 43 H 1.08997 * 110.31158 * 204.64024 * 25 24 23 44 44 H 1.08996 * 110.31047 * 82.46849 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.2235 1.1895 0.1149 5 6 1.4634 2.3835 -0.1476 6 7 0.1475 2.3953 -0.1226 7 14 2.4076 3.9782 -0.3817 8 1 3.8655 3.6961 -0.3737 9 1 2.0296 4.5912 -1.6804 10 1 2.0781 4.9151 0.7224 11 6 2.1975 -1.2687 -0.0006 12 7 2.6286 -1.5842 1.3635 13 6 3.6756 -1.1509 2.1173 14 8 4.5909 -0.3767 1.9336 15 6 3.2424 -2.0164 3.2709 16 6 3.0057 -1.4258 4.6608 17 6 4.3922 -1.9779 5.0391 18 6 4.2034 -3.0174 3.9192 19 6 2.0781 -2.4820 2.3976 20 1 2.1227 -3.5382 2.1319 21 6 0.7053 -2.0532 2.9198 22 1 0.7006 -0.9798 3.1089 23 6 0.3775 -2.8176 4.2203 24 6 -1.1376 -3.1156 4.0545 25 6 -1.2304 -3.3242 2.5220 26 8 -0.3045 -2.3816 1.9584 27 1 -0.3633 -1.0258 0.0633 28 1 -0.3634 0.5676 0.8566 29 1 -0.3634 0.4580 -0.9200 30 1 -0.3321 3.2322 -0.2261 31 1 3.0708 -1.1837 -0.6472 32 1 1.5484 -2.0629 -0.3693 33 1 2.1848 -1.8962 5.2020 34 1 2.9508 -0.3371 4.6701 35 1 5.2063 -1.2779 4.8515 36 1 4.4305 -2.4131 6.0377 37 1 5.1053 -3.1996 3.3348 38 1 3.7211 -3.9365 4.2520 39 1 0.9504 -3.7428 4.2815 40 1 0.5562 -2.1910 5.0942 41 1 -1.7422 -2.2662 4.3726 42 1 -1.4219 -4.0202 4.5920 43 1 -2.2417 -3.1165 2.1723 44 1 -0.9404 -4.3418 2.2604 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000811740783.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:16 Heat of formation + Delta-G solvation = -8.897320 kcal Electronic energy + Delta-G solvation = -25889.288810 eV Core-core repulsion = 22423.009644 eV Total energy + Delta-G solvation = -3466.279167 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.48850 -39.90561 -38.25812 -37.69742 -36.34956 -33.30958 -32.93606 -30.93992 -29.14609 -27.99393 -26.71178 -25.84082 -25.10085 -23.34059 -22.54674 -22.01710 -21.22535 -18.93755 -18.68350 -18.05579 -17.54529 -17.24514 -17.14386 -16.67207 -16.22369 -15.83168 -15.43663 -15.16151 -14.96400 -14.75424 -14.26749 -14.15248 -13.88545 -13.63053 -13.34099 -13.26575 -12.93689 -12.79546 -12.73792 -12.52554 -12.32157 -12.16703 -12.12745 -11.97313 -11.85871 -11.73680 -11.59512 -11.35328 -11.30155 -10.76806 -10.55148 -10.45168 -9.64355 -9.10543 -7.83896 -5.30033 1.34076 1.34909 1.47098 1.52835 2.17107 2.42968 2.95066 2.98740 3.26404 3.49967 3.66328 3.69276 3.73011 3.77429 3.87739 4.01174 4.09041 4.25480 4.30184 4.37698 4.46499 4.56203 4.62644 4.74144 4.83768 4.88776 4.90422 4.99596 5.02768 5.04611 5.08732 5.13754 5.18013 5.20602 5.37596 5.50397 5.54381 5.55381 5.80728 5.87409 5.89020 6.23784 6.29618 7.09994 7.39635 7.80406 8.15586 9.11457 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.014210 B = 0.006807 C = 0.005275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.981435 B = 4112.682553 C = 5306.400250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.201 3.799 2 N -0.608 5.608 3 C -0.253 4.253 4 H 0.055 0.945 5 C -0.051 4.051 6 N -0.934 5.934 7 Si 0.964 3.036 8 H -0.282 1.282 9 H -0.279 1.279 10 H -0.289 1.289 11 C 0.368 3.632 12 N -0.631 5.631 13 C 0.520 3.480 14 O -0.567 6.567 15 C -0.139 4.139 16 C -0.118 4.118 17 C -0.131 4.131 18 C -0.091 4.091 19 C 0.140 3.860 20 H 0.124 0.876 21 C 0.090 3.910 22 H 0.036 0.964 23 C -0.139 4.139 24 C -0.147 4.147 25 C 0.037 3.963 26 O -0.394 6.394 27 H 0.035 0.965 28 H 0.008 0.992 29 H 0.006 0.994 30 H 0.246 0.754 31 H 0.046 0.954 32 H 0.094 0.906 33 H 0.134 0.866 34 H 0.039 0.961 35 H 0.057 0.943 36 H 0.108 0.892 37 H 0.064 0.936 38 H 0.136 0.864 39 H 0.111 0.889 40 H 0.096 0.904 41 H 0.066 0.934 42 H 0.114 0.886 43 H 0.079 0.921 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.090 -19.354 13.546 23.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.332 5.332 3 C -0.384 4.384 4 H 0.073 0.927 5 C -0.244 4.244 6 N -0.583 5.583 7 Si 0.792 3.208 8 H -0.208 1.208 9 H -0.205 1.205 10 H -0.216 1.216 11 C 0.161 3.839 12 N -0.370 5.370 13 C 0.307 3.693 14 O -0.445 6.445 15 C -0.143 4.143 16 C -0.156 4.156 17 C -0.168 4.168 18 C -0.129 4.129 19 C 0.037 3.963 20 H 0.141 0.859 21 C 0.031 3.969 22 H 0.054 0.946 23 C -0.177 4.177 24 C -0.184 4.184 25 C -0.039 4.039 26 O -0.313 6.313 27 H 0.054 0.946 28 H 0.026 0.974 29 H 0.024 0.976 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.112 0.888 33 H 0.152 0.848 34 H 0.058 0.942 35 H 0.076 0.924 36 H 0.127 0.873 37 H 0.083 0.917 38 H 0.154 0.846 39 H 0.130 0.870 40 H 0.115 0.885 41 H 0.085 0.915 42 H 0.132 0.868 43 H 0.098 0.902 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.822 -18.661 12.916 22.709 hybrid contribution 0.350 1.900 -0.659 2.041 sum -0.472 -16.761 12.256 20.769 Atomic orbital electron populations 1.20596 0.80923 0.94702 0.98056 1.44899 1.03250 1.01623 1.83391 1.19445 0.90954 0.85604 1.42347 0.92664 1.25559 0.96595 1.00614 1.01680 1.70454 1.05905 1.25125 1.56783 0.85249 0.77802 0.80218 0.77505 1.20783 1.20534 1.21554 1.20826 0.94021 0.87166 0.81937 1.52981 1.25956 1.42933 1.15130 1.22408 0.80597 0.79949 0.86356 1.90607 1.34718 1.38634 1.80495 1.23722 0.96781 0.98959 0.94847 1.22976 1.00654 0.99893 0.92079 1.22804 0.95645 0.98032 1.00360 1.22734 0.97321 0.97109 0.95689 1.22904 0.92761 0.95699 0.84943 0.85870 1.22707 0.86665 0.97944 0.89554 0.94584 1.23271 0.96960 1.01793 0.95642 1.23250 0.95784 1.03689 0.95713 1.23625 0.93448 0.93251 0.93550 1.88569 1.40051 1.63429 1.39284 0.94641 0.97362 0.97599 0.94392 0.93554 0.88770 0.84838 0.94195 0.92381 0.87338 0.91688 0.84570 0.87014 0.88536 0.91514 0.86791 0.90247 0.90492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.20 10.80 8.85 127.77 1.13 11.93 16 2 N -0.61 -33.19 3.17 -738.78 -2.34 -35.53 16 3 C -0.25 -15.62 9.85 84.03 0.83 -14.79 16 4 H 0.06 3.61 7.84 -2.91 -0.02 3.59 16 5 C -0.05 -3.10 5.45 84.86 0.46 -2.64 16 6 N -0.93 -58.29 9.48 21.65 0.21 -58.08 16 7 Si 0.96 50.25 29.56 68.60 2.03 52.27 16 8 H -0.28 -14.80 7.11 99.48 0.71 -14.10 16 9 H -0.28 -14.00 7.11 99.48 0.71 -13.29 16 10 H -0.29 -14.82 7.11 99.48 0.71 -14.11 16 11 C 0.37 16.50 7.27 170.96 1.24 17.74 16 12 N -0.63 -25.28 3.39 -839.88 -2.84 -28.12 16 13 C 0.52 22.22 9.38 87.36 0.82 23.04 16 14 O -0.57 -29.85 18.03 -3.04 -0.05 -29.91 16 15 C -0.14 -3.87 1.22 -52.98 -0.06 -3.93 16 16 C -0.12 -2.78 6.84 30.87 0.21 -2.56 16 17 C -0.13 -2.54 8.08 31.24 0.25 -2.29 16 18 C -0.09 -1.67 7.86 30.97 0.24 -1.43 16 19 C 0.14 3.92 3.97 44.67 0.18 4.10 16 20 H 0.12 2.66 8.14 -2.39 -0.02 2.64 16 21 C 0.09 2.53 3.08 31.06 0.10 2.63 16 22 H 0.04 1.39 8.08 -2.39 -0.02 1.37 16 23 C -0.14 -2.20 5.05 31.85 0.16 -2.04 16 24 C -0.15 -2.19 7.16 32.05 0.23 -1.96 16 25 C 0.04 0.74 7.78 72.65 0.57 1.31 16 26 O -0.39 -12.13 9.31 -148.98 -1.39 -13.52 16 27 H 0.04 1.67 6.10 -2.38 -0.01 1.65 16 28 H 0.01 0.47 7.01 -2.39 -0.02 0.45 16 29 H 0.01 0.32 7.09 -2.38 -0.02 0.31 16 30 H 0.25 14.83 8.31 -92.70 -0.77 14.05 16 31 H 0.05 2.17 8.11 -2.39 -0.02 2.15 16 32 H 0.09 3.69 7.77 -2.39 -0.02 3.67 16 33 H 0.13 2.12 4.74 -2.39 -0.01 2.11 16 34 H 0.04 1.22 8.14 -2.38 -0.02 1.20 16 35 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.14 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.11 1.09 7.85 -2.39 -0.02 1.07 16 40 H 0.10 1.35 6.31 -2.39 -0.02 1.33 16 41 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -82.44 346.74 2.94 -79.50 By element: Atomic # 1 Polarization: 3.30 SS G_CDS: 0.98 Total: 4.29 kcal Atomic # 6 Polarization: 22.74 SS G_CDS: 6.35 Total: 29.10 kcal Atomic # 7 Polarization: -116.75 SS G_CDS: -4.98 Total: -121.74 kcal Atomic # 8 Polarization: -41.98 SS G_CDS: -1.44 Total: -43.42 kcal Atomic # 14 Polarization: 50.25 SS G_CDS: 2.03 Total: 52.27 kcal Total: -82.44 2.94 -79.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811740783.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.603 kcal (2) G-P(sol) polarization free energy of solvation -82.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds